BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488347
Length=1555
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15050.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylg... 2230 0.0
> AT5G15050.1 | Symbols: | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein | chr5:4871639-4873598
REVERSE LENGTH=1630
Length=1630
Score = 2230 bits (1207), Expect = 0.0
Identities = 1395/1485 (94%), Gaps = 15/1485 (1%)
Strand=Plus/Plus
Query 1 AACAAACAAACAAAAACACACCAATT-CTTCATTCATCTTCTCCATATCGTAATTCGTAC 59
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1 AACAAACAAACAAAAACACACCAATTCCTTCATTCATCTTCTCCATTTCGTAATTCGTAC 60
Query 60 ACTTGA--CTC---TCTCTC-AAGTCTC--TCTA--GAAGAAGAATCCATCTGAGAGTGA 109
|||| | ||| |||||| ||| | | | | |||||||||||||||| | || |
Sbjct 61 ACTTCACTCTCAAGTCTCTCTAAGCCACAAACCACTGAAGAAGAATCCATCT-A-AGAG- 117
Query 110 TTCTTCTGTAATTGATGAAGCTTCGAATATGAAGAAATTGAAGAGCTATTACATGCAAGT 169
| || ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 118 CTGTT-AAAAATTGATGAAGCTTCGAATATGAAGAAATTGAAAAGCTATTACATGCAAGT 176
Query 170 TCGTCACCAGCAACAATCTCTAGACCGGAAATGGATTCTTCCATTAGCAATCGGATCCAT 229
|||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 177 TCGTAACCAGCAACAATCTCTTGACCGAAAATGGATTCTTCCATTAGCAATCGGATCCAT 236
Query 230 TTGTTCTCTGTTTCTCTTATTGCTAACGAACTTAGCTTCATCTTCTGGTCAAACTCGTTT 289
||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 237 TTGTTCTCTCTTTCTCTTGTTGCTAACGAACTTAGCTTCTTCTTCTGGTCAAACTCGTTT 296
Query 290 GATTCCGTTTTCAGTCTACGGATTTAGATCCTCCGTCTTCGTCGAATCCAAAATAAATCC 349
|||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 297 GATTCCATTTTCAGTTTACGGATTTAGATCCTCCGTCTTCGTCGAATCCAAGATAAATCC 356
Query 350 AGTATCCGTCTCAGTCTCCGTCTCCGTCTCTCCTCCGCCGCCGCCACGTCTCGCGTATCT 409
||||||||||||| || ||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 357 AGTATCCGTCTCACTCACCGTCTCCGTCTCTCCTCCTCCGCCGCCACGTCTCGCTTATCT 416
Query 410 AATCTCCGGCTCCTCCGGTGACGGTCAGATGCTGAAACGGACTTTAATGGCGCTTTACCA 469
||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| ||
Sbjct 417 AATCTCCGGCTCCTCTGGTGACGGTCAGATGCTGAAACGAACTCTAATGGCGCTTTATCA 476
Query 470 TCCGAACAACCAGTACGTTGTTCATCTCGATCGGGAATCTTCACCAGAGGAACGATTGGA 529
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 477 TCCCAACAACCAGTACGTTGTTCATCTCGATCGGGAATCTTCACCGGAGGAACGATTGGA 536
Query 530 TCTCAGTGGTTTTGTAGCGAATCAAACTCTGTTTCAGAGATTTCAAAATGTTCGGATGAT 589
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 537 TCTCAGTGGTTTTGTGGCGAATCATACTCTGTTTCAGAGATTTCAAAATGTTCGGATGAT 596
Query 590 TGTTAAGGCTAATTTCGTTACTTATCGTGGTCCAACTATGGTGGCTAATACGCTTCACGC 649
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 597 TGTTAAGGCTAATTTCGTTACGTATCGTGGTCCAACTATGGTGGCTAATACACTTCACGC 656
Query 650 TGCAGCGATTTTGCTTCGTGAAGGTGGAGATTGGGATTGGTTCATCAATCTAAGTGCTTC 709
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 657 TGCAGCGATTTTGCTTCGTGAAGGTGGTGATTGGGATTGGTTCATCAATCTCAGTGCCTC 716
Query 710 TGATTATCCTCTCGTAACACAAGATGATCTGTTGCATACGTTTTCGTATCTTCCTCGAGA 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TGATTATCCTCTCGTAACACAAGATGATCTGTTGCATACGTTTTCGTATCTTCCTCGAGA 776
Query 770 TCTCAATTTCATCGATCATACGAGCAACATTGGTTGGAAAGAGTCTCATCGAGCGAAGCC 829
||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| |||||
Sbjct 777 TCTCAATTTCATCGATCATACAAGCAACATTGGCTGGAAAGAGTCTCATAGAGCAAAGCC 836
Query 830 GATAATTATTGATCCTGGTTTGTATATGTCAAAGAAAGCAGATGTTTTCTGGGTTTCACA 889
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 837 TATAATTATTGATCCTGGTTTGTATATGTCAAAGAAAGCTGATGTTTTCTGGGTTTCACA 896
Query 890 GAAGAGAAGTATGCCTACAGCTTTCAAACTCTTCACAGGATCTGCGTGGATGATGTTATC 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GAAGAGAAGTATGCCTACAGCTTTCAAACTCTTCACAGGATCTGCGTGGATGATGTTATC 956
Query 950 TAGACCTTTTGTGGATTATTTCATATGGGGATGGGACAATCTTCCTCGAATTGTTTTAAT 1009
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 957 TAGACCTTTTGTGGATTATTTCATATGGGGATGGGATAATCTTCCTCGAATTGTGTTAAT 1016
Query 1010 GTATTACGCAAACTTCCTTTCATCACCAGAAGGTTACTTCCACACGGTGATTTGCAATGC 1069
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1017 GTATTACGCAAACTTCCTTTCATCGCCAGAAGGTTACTTCCACACTGTGATTTGCAATGC 1076
Query 1070 TCGGGAGTTTACTAACACAACAGTAAACAGTGACTTACATTTCATCTCATGGGACAATCC 1129
||| |||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1077 TCGAGAGTTTACCAACACAACGGTTAACAGTGACTTACATTTCATCTCATGGGACAATCC 1136
Query 1130 ACCAAAGCAACACCCTCACCATCTCACAGTAGATGATTTTCAGAGAATGGTGGACAGTAA 1189
||||||||||| ||||||||||| ||| |||||||||| ||||||||||||||||||||
Sbjct 1137 TCCAAAGCAACATCCTCACCATCTTACATTAGATGATTTCCAGAGAATGGTGGACAGTAA 1196
Query 1190 CGCTCCTTTTGCTAGGAAATTCCGTAGAGATGAGCCTGTTCTCGATAAGATTGATTCAGA 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1197 CGCTCCTTTTGCTAGGAAATTCCGTAGAGATGAGCCTGTTCTCGATAAGATTGATTCGGA 1256
Query 1250 GCTCTTGTCACGGAGTCACGGGGTGGTCACTCCGGGGGGTTGGTGTATTGGTACGAGGGA 1309
|| |||| |||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1257 ACTATTGTTTCGGAGTCACGGGATGGTCACTCCGGGTGGTTGGTGTATTGGTACGAGGGA 1316
Query 1310 AAACGGGAGCGATCCGTGTGCGATGATTGGTGATACCTCTGTTATTAAACCTGGTCTTGG 1369
|||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||
Sbjct 1317 AAACGGGAGCGATCCGTGTGCGGTGATTGGTGATACGTCGGTTATTAAACCTGGTCTTGG 1376
Query 1370 AGCTAAACGGGTCGAGAAACTCATAACCTATTTGTTATCAACTGAGAATTTCAGACCACG 1429
|||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1377 AGCTAAACGGATCGAGAAACTCATAACTTATTTGTTATCTACTGAGAATTTCAGACCACG 1436
Query 1430 GCAATGCAGGTAATGGTAAATTAGAGTTATGTCAGAGAGATGGtt 1474
||||||| |||||||| ||||||||||| ||||| ||||||||||
Sbjct 1437 GCAATGCCGGTAATGGCAAATTAGAGTTTTGTCATAGAGATGGTT 1481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76756633305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5