BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488350
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15090.1 | Symbols: VDAC3, ATVDAC3 | voltage dependent anion... 1537 0.0
> AT5G15090.1 | Symbols: VDAC3, ATVDAC3 | voltage dependent anion
channel 3 | chr5:4889295-4891494 REVERSE LENGTH=1276
Length=1276
Score = 1537 bits (832), Expect = 0.0
Identities = 988/1060 (93%), Gaps = 24/1060 (2%)
Strand=Plus/Plus
Query 1 ACCACATTTTCTCCAGAATCCTCCATTACTCTTCTTCTTCTCAACTTCTGAATC-TTGAC 59
||| |||||||||||||||||||||||| | |||||||||| ||||| ||||| || |
Sbjct 21 ACCTCATTTTCTCCAGAATCCTCCATTA--C-TCTTCTTCTCGACTTCGGAATCTTTCA- 76
Query 60 AA-CTTTGTTCGATTTTTCCAGAAGCAATCATGGTTAAAGGTCCAGGACTCTACACCGAA 118
|| | || ||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 77 AAGC-TTCTTCGATTTTTCCAGAGGCAATCATGGTTAAAGGTCCAGGACTCTACACTGAA 135
Query 119 ATCGGCAAAAAAGCCAGAGATCTTCTGTACAAGGACTACCAAGGAGACCAGAAATTCAGT 178
||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 136 ATCGGCAAAAAGGCCAGAGATCTTCTGTACAGGGATTACCAAGGAGACCAGAAATTCAGT 195
Query 179 GTTACCACTTACTCTTCCACCGGTGTTGCGATCACTACAACCGGG-ACAAACAAAGGAAG 237
|| |||||||||||||| || ||||||||||||||||||| |||| ||||||||||||||
Sbjct 196 GTCACCACTTACTCTTCAACTGGTGTTGCGATCACTACAA-CGGGAACAAACAAAGGAAG 254
Query 238 -TGTGTTTTTGGGAGATGTAGCTACCCAAGTGAAGAACAAGAACTTCACTGCTGATGTCA 296
| |||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 255 CT-TGTTTTTGGGTGATGTTGCTACCCAAGTGAAGAACAACAACTTCACTGCTGATGTCA 313
Query 297 AAGTTTCCACTGATTCTTCTCTGTTGACCACTCTTACCTTTGATGAGCCTGCCCCTGGAC 356
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 314 AAGTTTCCACTGATTCTTCTCTTTTGACCACTCTTACCTTTGATGAGCCTGCCCCTGGAC 373
Query 357 TTAAAGTAATTGTTCAGGCTAAGTTGCCTGATCACAAATCTGGAAAGGCTGAGGTTCAGT 416
| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 374 TGAAAGTTATTGTTCAGGCTAAGTTGCCCGATCACAAATCTGGAAAGGCTGAGGTTCAGT 433
Query 417 ATTTCCATGACTATGCTGCTATCTCCACCAGCGTTGGATTCACAGCTAGCCCGATTGTCA 476
|||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||
Sbjct 434 ATTTCCATGACTATGCTGGTATCTCTACCAGCGTTGGATTCACAGCTACCCCGATTGTCA 493
Query 477 ATTTCTCCGGTGTGGTTGGAACCAATG-TTCTGGCTCTTGGTACTGATGTGGCCT-TCAA 534
| ||||||||||||||||||||||||| || || ||||||||||||||||||||| | ||
Sbjct 494 ACTTCTCCGGTGTGGTTGGAACCAATGGTT-TGTCTCTTGGTACTGATGTGGCCTAT-AA 551
Query 535 CACTGAATCTGGCAACTTCAAACATTTCAATGCTGGTTTGAACTTCACCAAGGATGATTT 594
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 552 CACCGAATCTGGCAACTTCAAACATTTCAATGCTGGTTTCAACTTCACCAAGGATGATTT 611
Query 595 GATTGCTTCCCTCATTCTGAATGAAAAAGGTGAGAAACTGAACGCATCCTACTACCAGAT 654
|| ||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||
Sbjct 612 GACTGCTTCCCTCATTCTGAATGACAAAGGTGAGAAATTGAATGCATCCTACTACCAGAT 671
Query 655 TGTGAACCCATTGACCAACACTGTGGTTGGAGCTGAGATTAGCCACAACTTCACGACGAA 714
||||| ||| | ||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 672 TGTGAGCCCGTCGAC------TGTGGTTGGAGCTGAGATTAGCCACAACTTCACGACCAA 725
Query 715 AGAGAATGCCATCACTGTCGGGACTCAACACGCAATTGACCCATTGACCACAGTGAAGGC 774
|||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 726 AGAGAACGCCATCACTGTCGGAACTCAACACGCGCTTGACCCATTGACCACAGTGAAGGC 785
Query 775 ACGAGTGAACAATGCTGGTGTGGCTAACGCACTGATCCAACATGAGTGGCGTCCAAAGTC 834
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 786 AAGAGTGAACAATGCTGGTGTGGCTAACGCTCTGATCCAACATGAGTGGCGTCCAAAGTC 845
Query 835 GTTCTTCACCGTTTCTGGAGAGGTTGATTCTAGGGCGATCGAGAAGAGTGCTAAGGTTGG 894
|||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||
Sbjct 846 GTTCTTCACCGTTTCTGGAGAGGTTGATTCTAAGGCGATCGATAAGAGTGCCAAGGTTGG 905
Query 895 GATTGCTCTCGCTCTCAAGCCTTGAGAAGATACCACCAAATGGGCCCTGATGTGGGTAGA 954
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 906 GATTGCTCTCGCTCTCAAGCCCTGAGAAGATACCACCAAATGGGCCCTGAAGTGGGTAGA 965
Query 955 ATAG-T-T-ATTTCGTTTTCGTCTTCAAATCTTTGGACAAATCTCTGTCTGGTTTGCTAA 1011
|||| | | ||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 966 ATAGGTGTTATTTCTTTTTCGTCTTCAAATCTTTGGACAAATCGCTGTCTGGTTTGCTAA 1025
Query 1012 ACAATCTTTCATTTGttttttttGTTCGGTGTTGGGATTT 1051
||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 ACAATCTTTCATTTGTTTTTTTTGTTCGGTGTTGGGATTT 1065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51540234822
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5