BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488352
Length=1617
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15110.1 | Symbols: | Pectate lyase family protein | chr5:4... 2505 0.0
AT3G01270.1 | Symbols: | Pectate lyase family protein | chr3:8... 848 0.0
AT2G02720.1 | Symbols: | Pectate lyase family protein | chr2:7... 150 3e-35
> AT5G15110.1 | Symbols: | Pectate lyase family protein | chr5:4895750-4897682
FORWARD LENGTH=1635
Length=1635
Score = 2505 bits (1356), Expect = 0.0
Identities = 1551/1641 (95%), Gaps = 30/1641 (2%)
Strand=Plus/Plus
Query 1 GCAGTACGATTCATCATC-TAAAGGCTTTAGGCTCTTAAAGaaaaaaatag---aaaaaa 56
|||||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||||
Sbjct 1 GCAGTACGATTCATCATCTTAAAGGCTTTAGGCTCTAAAAG-AAAAAATAGAAAAAAAAA 59
Query 57 a-CGACCTAAAGCCATGTCGAGAGCTTAGTAAA---C-CC-TTTAAGAA----AA---C- 102
| ||||||||||||||||||| ||||||||||| | || | ||| || || |
Sbjct 60 AGCGACCTAAAGCCATGTCGAAAGCTTAGTAAATTTCTCCATATAA-AATCTTAACCCCT 118
Query 103 -AAGGGaa-aa--aaaaaaGAAGAAGAGATTGtttaaatattaaaaaaaataaacta-tt 157
||| || || |||||| ||||||||||||||||||||||| | |||| |||||| ||
Sbjct 119 TAAGAAAACAAGGAAAAAAAAAGAAGAGATTGTTTAAATATTATATAAAA-AAACTATTT 177
Query 158 ttctgagaaagaaattttttttaaaaataaaagaaagaaagaTGGAGATGGCTAGGCTGT 217
|||||||||||||| |||||| ||||| |||| |||||||||||||||||| ||||||||
Sbjct 178 TTCTGAGAAAGAAA-TTTTTTGAAAAACAAAA-AAAGAAAGATGGAGATGGTTAGGCTGT 235
Query 218 CAAAGTTGATGTTTATGTTTTGTATTGCCGTTCTGATTCCGACCATTCGAGGTAACATTT 277
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 236 CAAAGTTGATGTTTACGTTTTGTATTGCCGTTCTAATTCCGACCATTCGAGGTAACATTT 295
Query 278 CTGAGCTGGACGAGTATTGGTCGCAACGAGCCGACGAAGCCAGAGAATTCACTCTTCAAG 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 CTGAGCTGGACGAGTATTGGTCGCAACGAGCCGACGAAGCCAGAGAATTCACTCTTCAAG 355
Query 338 CTTACCATTCTGATCCTTACGAAATCGTCGATCACTTTCATGAGCGTCACTACGACAACT 397
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 356 CTTACCATTCTGATCCTTACGAAATCGTCGATCACTTTCACGAGCGTCACTACGACAACT 415
Query 398 CTACTGATGTTACAACGACC-GAGGAAGAGGGTGATGCGAAGCCTGAAGAGGAGGAAAAA 456
||||||||||||||||| || |||||||| |||||||||||||| |||||||||||||||
Sbjct 416 CTACTGATGTTACAACG-CCTGAGGAAGATGGTGATGCGAAGCCCGAAGAGGAGGAAAAA 474
Query 457 GAGTTCATTGAAATGCTCGGAAGCTCGACGAACAGCACCAGACGAAGCTTAAGAGGTAAA 516
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 475 GAGTTCATTGAAATGCTCGGAAGCTCGACGAACAGCACCAGACGAAGCCTAAGAGGTAAA 534
Query 517 GGTAAAGGCAAATGGAGTAAGCTAAAGGGACCTTGTACCGCAAGTAACCCGATAGATAAA 576
|| || || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 535 GGCAAGGGAAAATGGAGTAAGCTAAAGGGACCTTGTACCGCAAGTAACCCCATAGATAAA 594
Query 577 TGTTGGCGTTGCCGATCGGATTGGGCTAAGCGTCGGAAGAGGCTTACACGTTGTGTCCGA 636
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 595 TGTTGGCGTTGCCGATCGGATTGGGCTAAGCGTCGGAAGAAGCTTACACGTTGTGTCCGA 654
Query 637 GGGTTCGGTCACAGGACGACCGGAGGAAAACGAGGACGCATCTACGTGGTTACAAGCAAC 696
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 655 GGGTTTGGTCACAGGACGACCGGAGGAAAACGAGGACGCATCTATGTGGTTACAAGCAAC 714
Query 697 CTCGACGACGACATGGTGAACCCTAAACCCGGGACATTGCGTCATGCCGTAATTCAGAAG 756
|||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 715 CTCGACGAAGACATGGTGAACCCTAAACCGGGGACATTGCGTCATGCCGTGATTCAGAAG 774
Query 757 GAACCTCTCTGGATCATTTTCAAGAATGATATGAGCATTCGGTTAAACCAAGAGCTTCTC 816
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 775 GAACCTCTGTGGATCATTTTCAAGAACGATATGAGCATTCGGTTAAACCAAGAGCTTCTG 834
Query 817 ATTAATAGCCACAAGACTATCGATGCACGAGGAGCCAATGTCCATGTAGCGCATGGTGCA 876
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 835 ATTAATAGCCACAAGACTATCGATGCACGAGGAGCTAATGTCCATGTAGCCCATGGCGCA 894
Query 877 GGGATCACAATGCAGTTTGTGAAAAATGTCATCATCCATGGACTGCATATTCACCACATT 936
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 895 GGGATCACAATGCAGTTTGTGAAAAATGTCGTCATCCATGGACTGCATATTCACCACATT 954
Query 937 TCCGAGAGTAGCGGTGGTATGATCCGAGACTCGGTCGACCATTTTGGAATGAGGACTAGA 996
|| ||||||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 955 TCTGAGAGTAGCGGTGGTATGATCCGAGACTCTGTAGACCATTTCGGAATGAGGACTAGA 1014
Query 997 GCTGATGGAGACGGTTTATCGATTTACGGTTCGTCTAACATTTGGCTTGACCATATTTCG 1056
||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1015 GCTGATGGAGATGGTCTATCGATTTATGGTTCGTCTAACATTTGGCTTGACCATATCTCG 1074
Query 1057 ATGTCTAAATGTCAAGATGGACTTATTGATGCCATTGTTGGATCCACTGGCATTACAATC 1116
||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1075 ATGTCGAAATGTCAAGATGGACTCATCGATGCCATTGTTGGATCCACTGGCATTACAATC 1134
Query 1117 TCCAACTCTCACTTCACTCACCACAACGATGTGATGTTGCTTGGTGCTCAAAACACGAAT 1176
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 TCCAACTCCCACTTCACTCACCACAACGATGTGATGTTGCTTGGTGCTCAAAACACGAAT 1194
Query 1177 GAAGCAGACAAGCATATGCAAGTCACAGTTGCTTATAACCATTTTGGTAAAGGACTTGTA 1236
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1195 GAAGCGGACAAACATATGCAAGTCACAGTGGCTTATAACCATTTTGGTAAAGGACTTGTA 1254
Query 1237 CAGAGAATGCCAAGGATCCGATGGGGATTTGTTCATGTTGTGAACAATGACTACACTCAC 1296
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1255 CAGAGAATGCCTAGGATCCGATGGGGATTTGTTCATGTTGTGAACAACGACTACACTCAT 1314
Query 1297 TGGGAGCTTTATGCGATCGGAGGTAGTCAAGGTCCTACGATTCTCAGCCATGGAAACCGA 1356
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 TGGGAGCTTTACGCGATCGGAGGTAGTCAAGGTCCTACGATTCTCAGCCATGGAAACCGA 1374
Query 1357 TTCATAGCTCCTCCACACAAACCTCATTACAGAGAGGTGACAAAGAGAGATTATGCTTCG 1416
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1375 TTCATAGCTCCTCCACACAAACCGCATTACAGAGAGGTGACAAAGAGAGATTATGCTTCG 1434
Query 1417 GAGGATGAGTGGAAACACTGGAACTGGAGATCTGAGAAAGATGTATTCATGAACGGAGCT 1476
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1435 GAGGACGAGTGGAAACACTGGAACTGGAGATCTGATAAAGATGTATTCATGAACGGTGCT 1494
Query 1477 TATTTCAGACAATCTGGAAATCCTCAATACAAATGTGCACACACAAGACAACAAATGATC 1536
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 TATTTCAGACAATCTGGTAATCCTCAATACAAATGTGCACACACAAGACAACAAATGATC 1554
Query 1537 AAACCGAAACATGGATTGGCTGTTTCAAAGCTGACCAAATATGCCGGAGCACTTGATTGC 1596
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AAACCGAAAAATGGATTGGCTGTTTCAAAGCTGACCAAATATGCCGGAGCACTTGATTGC 1614
Query 1597 AGAGTCGGGAAACGCTGTTAG 1617
|||||||||| ||||||||||
Sbjct 1615 AGAGTCGGGAGACGCTGTTAG 1635
> AT3G01270.1 | Symbols: | Pectate lyase family protein | chr3:82685-84897
REVERSE LENGTH=1812
Length=1812
Score = 848 bits (459), Expect = 0.0
Identities = 1145/1466 (78%), Gaps = 88/1466 (6%)
Strand=Plus/Plus
Query 191 aaagaaagaTGGAGATGGCTAGGC-TGTCAAAGTTGA-TGTTTATGTTTTGTATTGCC-G 247
||| ||| ||||||| |||||||| | ||||| || | ||| | || | ||||||||| |
Sbjct 171 AAATAAA-ATGGAGACGGCTAGGCTTTTCAAA-TT-AGTGTGTGTGATATGTATTGCCAG 227
Query 248 TTCTGATTCCGACCATTCGAGGTAACATT--T-CTGAG-CTGGACGAGTATT-GGTCGCA 302
|| ||||||||||||| |||| || || | |||| | || ||||||| ||| |
Sbjct 228 TT-TGATTCCGACCATACGAGCCAATGTTGCTGATGAGAC-CGATGAGTATTGGGT--AA 283
Query 303 ACGA-GCCGACGAAGC-CAG-AGAA-TTCACTCTTCA-AGCTTACCATTCTGATCCTTAC 357
|| | ||| | ||||| | | | || | || ||| | ||||| ||| | || |||||
Sbjct 284 ACAAGGCCAATGAAGCTC-GTA-AACAT-ACCCTT-ATGGCTTATCATCCCGACCCTTAT 339
Query 358 GAAATCGTCGATCACTTTCATGAGCGTCACTACGACAACTCTACTGATGTTAC-A-ACGA 415
|| |||||||| ||||| || |||||||| ||||||||||| ||||| | | | | ||
Sbjct 340 GAGATCGTCGACCACTTCCACGAGCGTCATTACGACAACTCGACTGACG-T-CGAGGGGA 397
Query 416 CCGAGGAAGAGGGTGATGCGAAGCCTGAAGAGGAGGAAAAAGA-GTTCATTGAAATGCTC 474
|||||||||| | | ||| | | | |||||| | || | ||||||| ||| |
Sbjct 398 CCGAGGAAGA--G-AAGGCG--GTC-GCTTCCGAGGAAGAGGACG-TCATTGAGATGATT 450
Query 475 GGAAGCT-CGACGAACAGCACCAGACGAAG-CT------TA--AG--A-GGTAAAGGTAA 521
|| | |||| |||||||| || || || || || | | || ||||| ||
Sbjct 451 TCTAG-TCCGACAAACAGCACAAGGCGGAGCCTAACCGGTAGGGGCAAGGGAAAAGGAAA 509
Query 522 AGGCAAATGGAGTAAGCTAAAGGGACCTTGTACCGCAAGTAACCCGATAGATAAATGTTG 581
||| |||||||| ||||||| ||||||||| |||||||| ||||| || |||||||| ||
Sbjct 510 AGGAAAATGGAGCAAGCTAACGGGACCTTGCACCGCAAGCAACCCCATCGATAAATGCTG 569
Query 582 GCGTTGCCGA-TCGGATTGGGCTAAG-CGTCGGAAGAGGCT--TACACGTTGTGTCCGAG 637
|||||||| | | |||||||| || ||||| |||| ||| | ||| |||||||| |
Sbjct 570 GCGTTGCC-AGCCTGATTGGGC-CAGACGTCGCAAGAAGCTCGTTCAC--TGTGTCCGTG 625
Query 638 GGTTCGGTCACAGGACGACCGGAGGAAAACGAGGACGCATCTACGTGGTTACAAGCAACC 697
|||| ||| ||||||| |||||||| ||||| || |||||||| || || || ||| ||
Sbjct 626 GGTTTGGTTACAGGACCACCGGAGGCAAACGCGGCCGCATCTATGTAGTCACGAGC-CCC 684
Query 698 -TCGACGACGACATGGTGAACCCTAAACCCGGGACATTGCGTCATGCCGTAATTCAGAAG 756
||||| || ||||||||||||| ||| || ||| | ||||| || || || |||||
Sbjct 685 AGAGACGATGATATGGTGAACCCTAGACCTGGAACACTACGTCACGCTGTGATCCAGAAA 744
Query 757 GAACCTCTCTGGATCATTTTCAAGAATGATATGAGCATTCGGTTAAACCAAGAGCTTCTC 816
|||||||| |||||| |||| ||| | ||||||||||||||||||| ||||||||| |
Sbjct 745 GAACCTCTATGGATCGTTTTTAAGCACGATATGAGCATTCGGTTAAGCCAAGAGCTGATG 804
Query 817 ATTAATAGCCACAAGACTATCGATGCACGAGGAGCCAATGTCCATGTAGCGCATGGTGCA 876
|||| ||| ||||||| |||||||| || || || || || || | || |||||||
Sbjct 805 ATTACTAGTGACAAGACAATCGATGCTCGTGGCGCTAACGTGCACATCGCATATGGTGCT 864
Query 877 GGGATCACAATGCAGTTTGTGAAAAATGTCATCATCCATGGACTGCATATTCACCACATT 936
|| ||||| ||||||| ||| | ||| ||||||||||||| || || | |||||||
Sbjct 865 GGTATCACGATGCAGTACGTGCACAATATCATCATCCATGGGCTTCACGTCCACCACA-- 922
Query 937 TC-CG-AGAGTAGCGGTGGTATGATCCGAGACTCGGTCGACCA-TTTTGGAAT-GAGGAC 992
|| | | || || |||||| |||| |||| ||| | |||| ||| || || |||||
Sbjct 923 TCGTGAAAAGCAGTGGTGGTTTGATAAGAGATTCGATTAACCACTTTGGGCATAGAGGA- 981
Query 993 TAGAGCTGATGGAGACGGTTTATCGAT-TTACGGTTCGTCTAACATTTGGCTTGACCATA 1051
|| ||||||||||| ||| | || || || || | | ||||||||||||||||| |
Sbjct 982 GAG-GCTGATGGAGATGGTATCTCTATCTT-TGGGGCAACAAACATTTGGCTTGACCACA 1039
Query 1052 TTTCGATGTCTAAATGTCAAGATGGACTTATTGATGCCATTGTTGGATCCACTGGC-ATT 1110
|||| ||||||||||| |||||||||||||| || || || | || ||||| || ||
Sbjct 1040 TTTCTATGTCTAAATGCCAAGATGGACTTATCGACGCTATAATGGGTTCCAC-CGCAATC 1098
Query 1111 ACAATCTCCAACTCTCACTTCACTCACCACAACGATGTGATGTTGCTTGGTGCTCAAAAC 1170
|| ||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1099 ACCATCTCTAACTCTCATTTCACCCACCACAACGATGTGATGTTGCTTGGTGCACAAAAC 1158
Query 1171 A-CGA-ATGAAGCAGACAAGCATATGCAAGTCACAGTTGCTTATAACCATTTTGGTAAAG 1228
| | | ||| | |||||| | |||||||||||||| ||||| |||||||| || ||||
Sbjct 1159 AACAACATGGAT--GACAAGAAGATGCAAGTCACAGTGGCTTACAACCATTTCGGAAAAG 1216
Query 1229 GACTTGTACAGAGAATGCCAAGGATCCGATGGGGATTT-GTTCATGTTGTGAACAATGAC 1287
||||||| ||||| ||||| ||| |||||||||| ||| || || ||||| |||||||||
Sbjct 1217 GACTTGTGCAGAGGATGCCTAGGGTCCGATGGGG-TTTCGTCCACGTTGTCAACAATGAC 1275
Query 1288 TACACTCACTGGGAGCTTTATGCGATCGGAGGTAGTCAAGGTCCTACGATTCTCAGCCAT 1347
|||||||| ||||||||||| |||||||| ||||| ||||||||||| ||||||||||||
Sbjct 1276 TACACTCATTGGGAGCTTTACGCGATCGGTGGTAGCCAAGGTCCTACCATTCTCAGCCAT 1335
Query 1348 GGAAACCGATTCATAGCTCCTCCACACAAACCTCATTACAGAGAGGTGACAAAGAGAGAT 1407
|||||||| ||||| |||||||| ||||||| || |||||||||||||||||||| |||
Sbjct 1336 GGAAACCGTTTCATCGCTCCTCCTCACAAACAACACTACAGAGAGGTGACAAAGAGGGAT 1395
Query 1408 TATGCTTCGGAG-GATGAGTGGAAACACTGGAACTGGAGATCTGAGAAAGATGTATTCAT 1466
|||||||| || | || |||||| |||||||||||||||| ||||||||||| |||||
Sbjct 1396 TATGCTTCAGAAAGC-GAATGGAAAAACTGGAACTGGAGATCCGAGAAAGATGTTTTCAT 1454
Query 1467 GAACGGA-GCTTATTTCAGACAATCTGGAAATCCTCAATACAAATGTGCACACACAAGAC 1525
|||| | || |||||||||||||||||||||||||| | ||| ||| | || | || |
Sbjct 1455 GAACA-ATGCATATTTCAGACAATCTGGAAATCCTCATTTCAAGTGTTCGCATTCTAGGC 1513
Query 1526 AACAAATGATCAAA-CCGAAACATGG-ATTGGCTGTTTCAAAGCTGACCAAATATGCCGG 1583
|||| ||||| ||| || ||| |||| || ||| ||||| ||||| |||||||| |||||
Sbjct 1514 AACAGATGAT-AAAGCCCAAAAATGGTAT-GGCCGTTTCTAAGCTTACCAAATACGCCGG 1571
Query 1584 AGCACTTG-ATTGCAGAGTCGGGAAA 1608
|||| ||| ||||| | ||||| |||
Sbjct 1572 AGCA-TTGGATTGCCGGGTCGGAAAA 1596
> AT2G02720.1 | Symbols: | Pectate lyase family protein | chr2:763011-765027
FORWARD LENGTH=1723
Length=1723
Score = 150 bits (81), Expect = 3e-35
Identities = 322/433 (74%), Gaps = 37/433 (9%)
Strand=Plus/Plus
Query 1081 ATTGATGCCATTGTTGGATCCACTGGC-ATTACAATCTCCAACTCTCACTTCACTC-ACC 1138
|||||||| || | ||||| ||| || ||||| |||||||| || || || || | |||
Sbjct 982 ATTGATGCGATCATGGGATCGACT-GCAATTACTATCTCCAATTCCCATTTTAC-CGACC 1039
Query 1139 ACAACGATGTGATGTTGCTTGGTGCTCA-AAACACGAATG-AAGCAGACAAGCATATGCA 1196
|| |||| |||||| | |||| | | | ||||| | ||| | | |||||| | ||||
Sbjct 1040 ACGACGAGGTGATGCTATTTGGGGGT-ACAAACAAGGATGTGATC-GACAAGAAAATGC- 1096
Query 1197 AG-TCACAGTTGC-TTATAACCATTTTGGTAAAG-GACTTGTA-CAGAGAATGCCAAGGA 1252
|| | |||||||| || ||||||||||||| ||| || ||| | || |||||||| | ||
Sbjct 1097 AGATAACAGTTGCGTT-TAACCATTTTGGT-AAGAGA-TTGAAGCAAAGAATGCCTA-GA 1152
Query 1253 -TCCGATGGGGATTT-GTTCATGTTGTGAACAATGACTACACTCACTGGGAGCTTTATGC 1310
|| ||| || ||| || |||||||||||||||||||||||||||||||| | |||||
Sbjct 1153 GTCAGATTTGG-TTTGGTCCATGTTGTGAACAATGACTACACTCACTGGGAAATGTATGC 1211
Query 1311 GATCGGAGGTAGTCAAGGTCC-TACGATTCTCAGCCATGGAAACCGATTCATAGCTCCTC 1369
|| || || | || | || ||| ||| | || || || || || ||||| |||||||
Sbjct 1212 AATTGGTGGAAA-CATGAACCCTACCATTATAAGTCAAGGCAATCGTTTCATTGCTCCTC 1270
Query 1370 C-ACACAAACCTCATTACAGAG-AGGTGACAAAGAGAGATTATGCTTCGGAGGATGAGTG 1427
| | || ||| || || |||| ||||||||||| || | | | ||| ||
Sbjct 1271 CTATTGAAG----ATTCCA-AGCAGGTTACAAAGAGAGAGTACACACCTTATCCTGAATG 1325
Query 1428 GAAA-CACTGGAACTGG-AGATCTGAGAAAGATGTATT-CATGAACGGAGCTTA-TTTCA 1483
|||| || ||||||||| | ||| ||||||||| |||| | |||| |||||||| |||
Sbjct 1326 GAAATCA-TGGAACTGGCA-ATCAGAGAAAGAT-TATTTCTTGAATGGAGCTTACTTTGT 1382
Query 1484 GACAATCTGGAAA 1496
| ||||| |||||
Sbjct 1383 G-CAATCAGGAAA 1394
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79869067095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5