BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488353
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15120.1 | Symbols: | Protein of unknown function (DUF1637)... 1517 0.0
> AT5G15120.1 | Symbols: | Protein of unknown function (DUF1637)
| chr5:4898737-4900581 FORWARD LENGTH=1189
Length=1189
Score = 1517 bits (821), Expect = 0.0
Identities = 914/960 (95%), Gaps = 2/960 (0%)
Strand=Plus/Plus
Query 29 ttttGTGAGATTTTTATGGGGTTTGAGATGAAACCAGAGAAAGAGGTTATGGAATTGATT 88
||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 63 TTTGGTGAGACTTTTATGGGGTTTGAGATGAAACCAGAGAAAGAGGTTTTGGAATTGATT 122
Query 89 TCGAGTAAGAACCAATGTATGTCTAGTCCCAATTCTGTCaagaagaagaataagaacaag 148
|| |||||||| ||||| | ||||| |||||||||||| ||||||||||| || ||||||
Sbjct 123 TCTAGTAAGAATCAATGCAAGTCTAATCCCAATTCTGTGAAGAAGAAGAACAAAAACAAG 182
Query 149 aataagaagatgatgatgacgtggagacggaagaagatTGATTCTCCGGCGGATGAGATC 208
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||
Sbjct 183 AATAAGAAGATGATGATGACGTGGCGACGGAAGAAGATTGATTCCCCGGCGGATGGGATC 242
Query 209 ACGGCGGTGCGGCGGTTGTTTAATACTTGCAAGGAAGTGTTCTCTAATGGTGGTCCTGGT 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 ACGGCGGTGCGGCGGTTGTTTAATACTTGCAAGGAAGTGTTCTCTAATGGTGGTCCTGGT 302
Query 269 GTTGTTCCTTCTGAAGATAAAATTCAACAGCTACGAGACATTCTTGACGATATGAAACCA 328
||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 303 GTTATTCCTTCTGAAGATAAAATCCAACAGCTACGAGAGATTCTTGACGATATGAAACCA 362
Query 329 GAGGATGTCGGTTTAGCTCCGACCATGCCGTATTTCCGACCAAACACCGGACTCGAAACT 388
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 363 GAGGATGTCGGTTTAACTCCGACCATGCCGTATTTCCGACCAAACTCCGGAGTCGAAGCT 422
Query 389 CGGTCTTCGCCACCGATAACGTATCTGCATCTACACCAATGTGATCAATTCTCGATTGGG 448
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 423 CGGTCTTCGCCACCAATAACGTATCTGCATCTACACCAGTGTGATCAATTCTCGATTGGG 482
Query 449 ATTTTCTGTTTGCCGCCTTCTGGTGTTATTCCACTTCATAACCATCCAGGGATGACAGTT 508
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 483 ATTTTCTGTTTGCCACCTTCTGGTGTTATTCCTCTTCATAACCATCCAGGGATGACAGTT 542
Query 509 TTTAGTAAGCTTCTCTTTGGTACAATGCACATCAAGTCGTATGATTGGGTGGTTGATACT 568
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 543 TTTAGTAAGCTTCTCTTTGGTACAATGCACATCAAGTCATATGATTGGGTGGTTGATGCT 602
Query 569 CCAATGAGAGATCCAAAAACCAGGCTAGCGAAACTGAAGGTGGACTCAACATTCACCGCG 628
|||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 603 CCAATGAGAGATTCAAAAACCAGGCTAGCGAAATTGAAGGTGGATTCAACATTCACCGCG 662
Query 629 CCGTGCAACGCCTCGATTTTGTACCCGGAAGATGGCGGGAACATGCATCGGTTCACAGCT 688
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 CCATGTAACGCCTCGATTTTGTACCCGGAAGATGGCGGGAACATGCATCGGTTCACAGCT 722
Query 689 AAAACAGCATGTGCGGTGCTAGACGTGCTTGGACCTCCTTACTGCAATCCAGAAGGCAGA 748
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 723 ATAACAGCATGTGCGGTGCTAGACGTGCTAGGACCTCCTTACTGCAATCCAGAAGGCAGA 782
Query 749 CATTGCACTTATTTCCTAGAATTCCCTTTTGACCAATTTTCATCAGAGGACGACGATATT 808
||||||||||||||||||||||||||||| ||| || | ||||||||||||||||| ||
Sbjct 783 CATTGCACTTATTTCCTAGAATTCCCTTTAGACAAACTCTCATCAGAGGACGACGACGTT 842
Query 809 TTGAGAAGTGAAGAGGAGAAGGAAGGTTATGCATGGCTGCAAGAAAGGGATGATAATCCA 868
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TTGAGCAGTGAAGAGGAGAAGGAAGGTTATGCATGGCTGCAAGAAAGGGATGATAATCCA 902
Query 869 GAAGATCATACTAACGTAGTTGGAGCATTATACAGAGGCCCAAAGGTTGAAGATTGAGAG 928
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 903 GAAGATCATACTAACGTAGTTGGAGCGTTATACAGAGGCCCAAAGGTTGAAGATTGAGAG 962
Query 929 Cttttttttttatccatttcgcttttcagatttcgaatca-ctttcttcttctttttttc 987
||| |||||| | ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 963 CTTCTTTTTT-ACCCATTTCGCTTTTCAGATTTCGAATCAACTTTCTTCTTCTTTTTTTC 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48325249414
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5