BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488355
Length=1456
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15140.1 | Symbols: | Galactose mutarotase-like superfamily... 2174 0.0
> AT5G15140.1 | Symbols: | Galactose mutarotase-like superfamily
protein | chr5:4908686-4910799 FORWARD LENGTH=1602
Length=1602
Score = 2174 bits (1177), Expect = 0.0
Identities = 1381/1477 (94%), Gaps = 24/1477 (2%)
Strand=Plus/Plus
Query 1 ATGGCGAGAAGTTCTGTTTTGTTATGTTTAATTCTATTGGTTACGTTAGGAGTTGTGATA 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGAGAAGTTCTGTTTTGCTATGTTTAATTCTATTGGTTACGTTAGGAGTTGTGATA 60
Query 61 AGTGTCACATTTGCCGACAACATTGAAGTGAAATCAAAAGATCTAGAGAGCAGTAAGAAA 120
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 61 AGTGTCACATTTGCCGACAACGTTGAATTGAAATCAAAAGATCTAGAGAGCAGTAAGAAA 120
Query 121 GATAAGAAGGTTGATCATGATAGT------------AAGGGAGGAGAAAAGGTAGATGGT 168
|||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 121 GATAAGAAGGTTGATCATGATAGTACACACAAAGAGAAGGGAGGTGAAAAGGTAGATGGT 180
Query 169 GCAAGTTCTGATGATGAAGAAAACGATAAAAAGGACAAAAAGAAAGGGCATGATGTGCAC 228
|| |||||||||||||||| ||||||||||| || |||||||||| ||||||||||||
Sbjct 181 GCCGGTTCTGATGATGAAGACAACGATAAAAAAGAAAAAAAGAAAGAGCATGATGTGCAA 240
Query 229 AAAAAGGATAATCAACATGAAAACAAAGACAAGGATGATGAGAAGAAGCATGTTGATAAG 288
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 AAAAAGGATAAACAACATGAAAACAAAGACAAGGATGACGAGAAGAAGCATGTTGATAAG 300
Query 289 AAAAAGAGCGTTGGTCatgataaagatgatgatgatgaaaagaagcataaggataaaaag 348
|| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 AAGAAGAGCGGTGGTCATGATAAAGATGATGATGATGAAAAGAAGCACAAGGATAAAAAG 360
Query 349 aaggatggacac-a--atgatgatg--a-tgatgatgatacggatgatga-taccgatga 401
|||||||||||| | ||||||||| | ||||||||||||||||||||| | || ||
Sbjct 361 AAGGATGGACACAATGATGATGATGATAGTGATGATGATACGGATGATGACGA-TGACGA 419
Query 402 tgatgacgacgatgatgatgaagatgaagatgatggagatgataatgaGAAGGAGAATAT 461
|||||| || ||||||||||| ||||||| ||||||||||||||||||||||||||| ||
Sbjct 420 TGATGATGATGATGATGATGATGATGAAGTTGATGGAGATGATAATGAGAAGGAGAAAAT 479
Query 462 TGGGTTATACGAGCTCAAGAAGGGAAATCTAAC-GATCAAATTCACAAATTGGGGTGCTT 520
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 480 TGGGTTATACGAGCTCAAGAAGGGAAATCTAACTG-TCAAATTCACAAATTGGGGTGCTT 538
Query 521 CAATCATGTCTCTCCATTTCCCTGACAAAAATGGAAAAATGGACGATATTGTTCTTGGCT 580
||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 539 CAATCATATCTCTCCATTTCCCAGACAAAAATGGTAAAATGGACGATATTGTTCTTGGCT 598
Query 581 ATGATAGCGTCAAATCCTACAAGACCGACAAGGTGTATTTCGGAGCAACCGTGGGCCGAG 640
|||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 599 ATGATAGCGTCAAAACCTACAAGACCGACAAGGTTTATTTCGGAGCAACCGTTGGCCGAG 658
Query 641 TAGCAAATAGAATAGGAAATGCCAAATTCAAATTGAATGGTAAAGAGTACAAGACAAGTG 700
||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||
Sbjct 659 TAGCAAATAGAATAGGAAAGGGCAAATTCAAGTTGAATGGTAAAGAGTACAAGACAAGTG 718
Query 701 CCAACGATGGGAAAAACACACTTCATGGTGGCAAGAAAGGATTTGGGGATGTTGTGTGGG 760
||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 719 TCAACGATGGAAAAAACACACTCCATGGTGGCAAGAAAGGGTTTGGGGATGTTGTGTGGG 778
Query 761 CAGTTGCAAAACACAAGTATGATGGCAAGAAACCTCACATTGTCTTCACTTACACAAGCC 820
|||||||||||||| |||| |||||||||||||| ||||||||||||||| ||||||| |
Sbjct 779 CAGTTGCAAAACACCAGTACGATGGCAAGAAACCACACATTGTCTTCACTCACACAAGTC 838
Query 821 CTGATGGCGATCAAGGGTTTCCCGGAGAACTCAATGTCACGGTGACATACAAACTTGTCA 880
|||| ||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct 839 CTGACGGCGATCAAGGGTTTCCGGGAGAACTCAGTGTCACGGTGACATATAAACTTGTCA 898
Query 881 AAGACAATGAATTGAGTGTGGTGATGGAGGCAAAGCCTATA-GATAAAGCAACTCCGGTG 939
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 899 AAGACAATGAATTGAGTGTGGTGATGGAGGCAAAGCCTA-AGGATAAAGCAACTCCGGTG 957
Query 940 AACTTAGCTCATCACAGTTATTGGAATCTTGGTGGTCATAATTCCGGAGATATTTTGTCT 999
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AACTTAGCTCATCATAGTTATTGGAATCTTGGTGGTCATAATTCCGGAGATATTTTGTCT 1017
Query 1000 GAAGAAATTCAAATCCTCGGCTCAAGCTATACTCCCGTCGATGGTGAGCTCATTCCCACC 1059
||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||||
Sbjct 1018 GAAGAAATTCAAATCCTCGGCTCGGGTTATACCCCCGTCGACGGTGAGCTCATTCCCACC 1077
Query 1060 GGAAAAATCACTCCAGTGAAAGGAACAGCGTATGATTTTCTCCAACTCCGCCCTATAAAA 1119
|| ||||||| ||| |||||||||||||| || ||||||||||||||||| ||||| |||
Sbjct 1078 GGGAAAATCAATCCGGTGAAAGGAACAGCATACGATTTTCTCCAACTCCGTCCTATTAAA 1137
Query 1120 GATAATATGAAGGATCTTAAAACAGGATATGATATAAATTATTGCTTAGATGGTAAGGCG 1179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GATAATATGAAGGATCTTAAAACAGGATATGATATAAATTATTGCTTAGATGGTAAGGCA 1197
Query 1180 AAAAAGATGAGAAAGATAGTGGAACTCGTAGATAAGAAATCGGGGAGAAAAATGGAGTTA 1239
|||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 1198 AAAAAGATGAGAAAAATAGTTGAACTCGTAGATAAGAAATCAGGGAGGAAAATGGAGTTA 1257
Query 1240 TCCGGAAACCAACCGGGTTTGCAATTCTATACCGGAGGAATGTTAAAGGATATCAAAGGG 1299
|||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1258 TCCGGAAACCAAGCGGGTTTGCAATTCTATACCGGAGGGATGTTAAAGGATGTCAAAGGG 1317
Query 1300 AAGAATGGGGCGGTTTACCAAGCTTTCGGGGGATTATGTTTAGAAACACAAAGTTATCCA 1359
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 AAGAATGGGGCAGTTTACCAAGCTTTCGGGGGATTATGTTTAGAAACACAAAGTTATCCA 1377
Query 1360 GACGCATTAAACCATCCGAAATTTCCTTCACAGATTGTCGAGCCAGGGAAGAAATACAAG 1419
|||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1378 GACGCATTGAACCATCCCAAATTTCCTTCACAGATTGTCGAGCCAGGGAAAAAATACAAA 1437
Query 1420 CACACTATGCTCTTCAAGTTTTCTATTGTTTCATAGA 1456
|||||||||||||||||||||||||||||||||||||
Sbjct 1438 CACACTATGCTCTTCAAGTTTTCTATTGTTTCATAGA 1474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71786779350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5