BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488358
Length=2200
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15170.1 | Symbols: TDP1 | tyrosyl-DNA phosphodiesterase-rel... 2929 0.0
> AT5G15170.1 | Symbols: TDP1 | tyrosyl-DNA phosphodiesterase-related
| chr5:4926094-4929502 REVERSE LENGTH=2219
Length=2219
Score = 2929 bits (1586), Expect = 0.0
Identities = 1919/2072 (93%), Gaps = 53/2072 (3%)
Strand=Plus/Plus
Query 1 TGATGCTGATGCGGCGGTGTGATTGTCGCCGCCGGCGTGGAGAATCGTTACCGTTATCGT 60
||||| |||||||| || ||||||||||||||||||||||| | ||||||| |||
Sbjct 7 TGATGATGATGCGGTTGTCTGATTGTCGCCGCCGGCGTGGAG-A-----ACCGTTACCGT 60
Query 61 TACTATGAGTTTGTTGCCCATTATTACTTACTTCTCCATTGAAACATCATCGC-AAA-TT 118
|||||||| ||| |||||| | ||| ||||||||||||||||| | | ||| ||
Sbjct 61 TACTATGAATTTCTTGCCC------A-TTA-TTCTCCATTGAAACATC--C-CAAAATTT 109
Query 119 TC-TTA-TTTGATCCCATTG--A-GC-GCGTTTTGcttcttcttctccttcttcttcact 172
|| || || | | || || | || ||||||||| ||||||||| |||| ||| |
Sbjct 110 TCGCTAGTTAG-T-TCACTGAAACGCAGCGTTTTGCATCTTCTTCTTCTTC--CTT-GGT 164
Query 173 tcacttcaacctcagacacttgtcttccttAATGGCTCACTCTCAGGTTGCGTATTTGAT 232
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 165 TCAATTCAACCTCAGACACTTGTCTTCCTTAATGGCTCACTCTCAGGTTGCTTATTTGAT 224
Query 233 TCCATTGAAAGCTGATTTAAAGGAAGACAATTCATCTCCAAGGATAACTTTATCCGAAGG 292
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 TCCATTGAAAGCAGATTTAAAGGAAGACAATTCATCTCCAAGGATAACTTTATCCGAAGG 284
Query 293 TCCAAACTTCATCGGCCGCGGCAACGTTTCAACCGTCGATAAGCGTCTCAGTCGCAAACA 352
||||||| |||| ||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 285 TCCAAACATCATTGGCCGTGGCAACGTTTCAATCGTCGATAAGCGTCTCAGTCGCAAACA 344
Query 353 CATCACCATTATCGCTTCCACGTCTGGCTCAGCTTCGTTGTCAGTGGAAGGAACGAATCC 412
|||||||||||||| |||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 345 CATCACCATTATCGTTTCCACTTCTGGCTCAGCTTCGTTGTCAGTGGACGGAACAAATCC 404
Query 413 GGTTGTTATTAGGTCTTCTGGTGGCGGCGAGAGGAAGAAAGTGAAACCCCGTGAAGAGGT 472
|||||||||||||||||| |||| ||| ||||| |||||||||||||| ||||||||||
Sbjct 405 GGTTGTTATTAGGTCTTCCGGTGACGGAGAGAGAAAGAAAGTGAAACCTAGTGAAGAGGT 464
Query 473 TTCAGTAAGTAATGATGATCTTATTGAATTGATCCCTGGTCATCATTTCTTCAAGCTAGT 532
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 465 TTCAGTATGTAATGATGATCTTATTGAATTGATCCCTGGTCACCATTTCTTCAAGCTAGT 524
Query 533 TTTGTTACCCGTTGAAAACAAAGGAAGCCATGAAAGAGCTGCTAAGAAAGCTCGAAAGGC 592
|||| | | | | ||| |||||||||||||||||||||||||||
Sbjct 525 TTTG-----C--T-----C------A---ATGGAAGAGCTGCTAAGAAAGCTCGAAAGGC 563
Query 593 TGAAGATGATGTAGAGGCGATTCGTCGTTTTTGTCCACCTAATGAGAAACTACCTTCAAC 652
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 564 TGAAGACGATGTAGAGGCCATTCGTCGTTTTTGTCCACCTAATGAGAAACTACCTTCAAC 623
Query 653 GTTTCGGCTTTTGAATGTTAATGGATTGCCTGATTGGGCTAATACCTCTTGTGTTTCCAT 712
||||||||||||| |||| ||| ||||||||||||||||||||| ||||||||||||||
Sbjct 624 ATTTCGGCTTTTGAGTGTTGATGCATTGCCTGATTGGGCTAATACTTCTTGTGTTTCCAT 683
Query 713 TAATGATGTCATTGAGGGAGACGTTGTTGCTGCAATCCTATCGAATTATATGGTCGATGT 772
||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| |
Sbjct 684 TAATGATGTCATTGAGGGAGACGTTGTTGCTGCGATCTTATCGAATTATATGGTTGATAT 743
Query 773 AGACTGGTTAATGTCAGCTTGTCCC-AAACTGGCCAACATTCCCCAGGTTATGGTCATTC 831
||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| ||||
Sbjct 744 AGACTGGTTGATGTCAGCTTG-CCCAAAACTGGCCAACATTCCCCAGGTTATGGTTATTC 802
Query 832 ATGGAGAAGGTGATGGTAGGCAAGAGTATATTCAGAGGAAGAAGCCAGTTAATTGGATTC 891
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 803 ATGGAGAAGGTGATGGTAGGCAAGAGTATATTCAGAGGAAGAAGCCAGCTAATTGGATTC 862
Query 892 TTCATAAGCCCCGGTTACCTATTTCATTCGGGACACACCATTCGAAGGCTATATTTCTTG 951
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 TTCATAAGCCTCGGTTACCTATTTCATTCGGGACACACCATTCGAAGGCTATATTTCTTG 922
Query 952 TCTATCCACGAGGAGTGAGAGTTGTAGTACACACTGCGAATCTGATCCATGTTGATTGGA 1011
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 923 TCTATCCTCGAGGGGTGAGAGTTGTAGTACACACCGCGAATCTGATCCATGTTGATTGGA 982
Query 1012 ACAACAAAAGCCAAGGTTTGTGGATGCAAGATTTTCCTTGGAAAGATGATGACAAAGATC 1071
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 983 ATAACAAAAGCCAAGGTTTGTGGATGCAAGATTTTCCTTGGAAAGATGATGACAAAGATC 1042
Query 1072 CACCTAAAGGTTGTGGATTCGAAGGTGATCTTATCGATTACCTCACTGTTCTTAAGTGGC 1131
||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||
Sbjct 1043 CACCTAAAGGTTGTGGATTCGAAGGTGATCTCATTGATTACCTCAATGTTCTTAAGTGGC 1102
Query 1132 CTGAGTTCAGTGCAAACTTGCCTGGCCGTGGTAATGTCAAAATCAATGCAGCCTTCTTCA 1191
||||||| | ||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1103 CTGAGTTTACTGCAAACTTACCTGGCCGTGGTAATGTCAAGATCAATGCAGCCTTCTTCA 1162
Query 1192 AAAAGTTTGATTATTCTGATGCTAAGGTTAGACTAATTGCATCGGTCCCTGGATACCACA 1251
|||||||||||||||||||||||| |||| |||||||||| || ||||||||||||||||
Sbjct 1163 AAAAGTTTGATTATTCTGATGCTACGGTTCGACTAATTGCTTCAGTCCCTGGATACCACA 1222
Query 1252 CTGGTTTGAACTTGAAAAAATGGGGACACATGAAGCTACGGACTATTCTTCAAGAATGCA 1311
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 CTGGTTTTAACTTGAACAAATGGGGACACATGAAGCTACGGACTATTCTTCAAGAATGCA 1282
Query 1312 TATTCGATAGAGAGTTCTGCAGATCCCCGTTAGTTTATCAGTTTTCTTCACTTGGTTCTT 1371
| ||||||||||||||| ||||||||||| || | |||||||||||||||||||||||||
Sbjct 1283 TTTTCGATAGAGAGTTCCGCAGATCCCCGCTAATCTATCAGTTTTCTTCACTTGGTTCTT 1342
Query 1372 TAGACGAGAAATGGTTGGCTGAATTTGGAAATTCTTTGTCTTCTGGTATAACAGAGGACA 1431
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1343 TAGACGAGAAGTGGTTGGCTGAGTTTGGAAATTCTTTGTCTTCTGGTATAACAGAGGACA 1402
Query 1432 AAACTCCTCTCGGTCCCGGGGATCCGTTGATAATATGGCCTACAGTAGAAGACGTCAGAT 1491
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1403 AAACTCCTCTCGGTCCCGGGGATTCGTTGATAATATGGCCTACAGTAGAAGACGTCAGAT 1462
Query 1492 GTTCTTTAGAGGGTTATGCTGCTGGCAATGCAATTCCGAGCCCTTTGAAGAACGTGGAGA 1551
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1463 GTTCTTTAGAGGGTTATGCTGCTGGCAATGCAATTCCGAGCCCATTGAAGAACGTGGAGA 1522
Query 1552 AACCATTCTTGAAAAAGTATTGGGCTAGATGGAAAGCGGATCATAGTGCTCGTGGTCGTG 1611
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1523 AACCATTCTTGAAAAAGTATTGGGCTAGATGGAAAGCGGATCATAGCGCTCGCGGTCGTG 1582
Query 1612 CCATGCCACATATAAAGACATTCACACGTTACAACAACCAGAAGCTTGCATGGTTCTTAC 1671
||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||
Sbjct 1583 CCATGCCACATATAAAGACGTTCACACGTTACAACGACCAGAAGATTGCATGGTTCTTAC 1642
Query 1672 TAACCTCATCGAATCTTAGCAAAGCGGCCTGGGGAGCACTTCAGAAAAACAATTCCCAGT 1731
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1643 TAACCTCATCGAATCTTAGCAAAGCGGCCTGGGGAGCACTTCAGAAGAACAATTCACAGT 1702
Query 1732 TGATGATCCGTTCCTACGAGTTGGGTGTCTTGTTTTTACCATCTCCAATAAAAACACAAG 1791
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1703 TGATGATTCGTTCCTACGAGTTGGGCGTCTTGTTTTTACCATCTCCAATAAAAACACAGG 1762
Query 1792 GTTGTATATTTTCATGCACTGAGAGCAACCCGAGTACTATGAAGGCAAAACAAGAGAGGA 1851
||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1763 GTTGTGTATTTTCGTGCACTGAGAGCAACCCGAGTGTTATGAAGGCAAAACAAGAGACGA 1822
Query 1852 AAGACGAAGCAGAGAAGAGGGGTAAGCTAGTGACCATGACCTGGCAAGGAGACAGAGATT 1911
||||||| | |||||||||| ||||||||||||| |||||||||||||||||| ||||||
Sbjct 1823 AAGACGAGGTAGAGAAGAGGAGTAAGCTAGTGACAATGACCTGGCAAGGAGACCGAGATT 1882
Query 1912 CGCCTGAGATAATCTCATTACCAATTCCTTATGAACTACCTCCTAAGCCATACTCAGCCG 1971
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 1883 TGCCTGAGATAATCTCATTACCAGTTCCTTATCAACTACCTCCTAAGCCATACTCACCCG 1942
Query 1972 AAGATGTTCCATGGTCATGGGACCGAGGCTACTCGAAGAAAGATGTGTATGGACAAGTCT 2031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1943 AAGATGTTCCATGGTCATGGGACCGAGGCTACTCGAAGAAAGATGTGTATGGACAAGTCT 2002
Query 2032 GGCCAAGATAGTTGATGATAGCTTTAGTAGCT 2063
||||||||||||||||||||||||||||||||
Sbjct 2003 GGCCAAGATAGTTGATGATAGCTTTAGTAGCT 2034
Score = 147 bits (79), Expect = 6e-34
Identities = 96/104 (92%), Gaps = 1/104 (1%)
Strand=Plus/Plus
Query 2097 CTAAGCGAACAACAACCAGACGGATAAACAAAAATTAGTGTGAAAACAGATTGAAATCTG 2156
|||||||| ||||||||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct 2116 CTAAGCGATGAACAACCAGACGGATAAACAAAAATTAGTGTGAAA-CTGATTGAAGTCTG 2174
Query 2157 TGGATTAATCCGGAGTAGTCCAACAATTGATAGGATTAGTATTG 2200
|||||||||||||| ||||||| |||| ||||||||||||||||
Sbjct 2175 TGGATTAATCCGGATTAGTCCACCAATGGATAGGATTAGTATTG 2218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109135984830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5