BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488361
Length=689
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15190.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 619 9e-177
> AT5G15190.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis,
petal differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; Has 7 Blast hits to 7 proteins
in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr5:4932850-4933577 REVERSE LENGTH=728
Length=728
Score = 619 bits (335), Expect = 9e-177
Identities = 553/650 (85%), Gaps = 48/650 (7%)
Strand=Plus/Plus
Query 1 GTCTTTCACAGTTCACAATAACTTTTCAAATTTCGAAATTCGAATTTTTGTTCCTCACAA 60
|||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 GTCTTTCACACTGGACAATAACTTTTCAAATTTCGAAATTCGAATTTTTGTTACTCACAA 60
Query 61 ATCTCTCTCTATATAAACGATGATGACGATTGGAGGAGGAGGAGGAGAAGCTGAATCGTG 120
|||||||| |||||||||||||||||||| | | || ||| | ||||||||||||||||
Sbjct 61 ATCTCTCTTTATATAAACGATGATGACGA-T-G-GGTGGA--A-GAGAAGCTGAATCGTG 114
Query 121 GCCGGAGATGGAAGCCATAGCTAGGAAGATGGTGGAAGAGGTTGAAACAGAGAGTAGCGG 180
||||||||||||||| ||||||||||||||||| || || ||||||||||||||||||||
Sbjct 115 GCCGGAGATGGAAGCGATAGCTAGGAAGATGGTTGAGGAAGTTGAAACAGAGAGTAGCGG 174
Query 181 ATCATCGGAAGCTGAGACGGAGTCTCCGAGATCCGTCGGACGTTGGATCACAGCTAAGGA 240
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 175 ATCATCGGAAGCTGAGACAGAGTCTCCGAGATCCGTCGGACGTTGGATCACGGCTAAAGA 234
Query 241 CCGAGTTCATAGCCAGGTTTTGAAGATTATGGAAGAGGATCTATGTGTTCTCGTCGAAGA 300
||| |||| |||||| |||||||||| |||||||||||| |||||||| || |||||
Sbjct 235 GAAAGTACATAACCAGGTATTGAAGATTAGGGAAGAGGATCTCTGTGTTCTTGTTGAAGA 294
Query 301 TAAAGCTG-CGAATCCAGAGGATCGACGATATCTTCGTCCACGTCGTCTTAATCTGTTTT 359
|||| || |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 295 CAAAG-TGACGAATCCAGAGGATCGACGATATCTTCGTCCACGTCGTTTTAATCTGTTCC 353
Query 360 TGATCTCGCGGCCGAATCTGCCTTGTTCGCCTCTTAGTGGAAAAGTGAGATCCGTTCGTT 419
|||||||||| | |||| ||||||||||||| ||||||||||||| ||||||||||
Sbjct 354 TGATCTCGCGTCAGAATTTGCCTTGTTCGCCACTTAGTGGAAAAGGGAGATCCGTT---- 409
Query 420 AACGCTGTTCAGAGTCAGTGATGATGATGATGATTCCCATAGATCTAAA-TCGATCAAGG 478
|||| |||||||| |||||||||||||| | | | | |||| ||| ||||||||||
Sbjct 410 AACGTTGTTCAGACTCAGTGATGATGAT--TCA--C--A--GATCCAAAATCGATCAAGG 461
Query 479 TTCGTCTCTCGATGGAC----CGATCCAACAAATTACACACTAAGCTT-T-TGA-TTTCT 531
|| || |||||||| | |||||||||||||||||| ||| ||| | ||| |||
Sbjct 462 TTTGTTTCTCGATGTATATATCGATCCAACAAATTACAC--TAAACTTATATGAATTTG- 518
Query 532 ATCTCAATTACACTATTTTTTGCAGGTGATATGTC--CTT-C--T--CT--Gtttttttt 582
|||||| |||||||| ||| ||||||||||||||| ||| | | || |||||||||
Sbjct 519 ATCTCATTTACACTAGTTTGTGCAGGTGATATGTCTTCTTTCAATTTCTCTGTTTTTTTT 578
Query 583 c--t-gcttttgaacttttttt----gttgtttcgttttttttttttttt 625
| ||||| ||||||||||| |||||||||||| |||| |||||
Sbjct 579 TGGTTGCTTT-GAACTTTTTTTTATTGTTGTTTCGTTTCGTTTTGTTTTT 627
Score = 102 bits (55), Expect = 4e-21
Identities = 61/64 (95%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 626 ttttttttttttttCTGGTGATAAATGTCATGTGTATATAAACCGTGAATCTGTATATAT 685
||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 660 TTTTTTTGTTTTTTATGGTGATAAAAGTCATGTGTATATAAACCGTGAATCTGTATATAT 719
Query 686 GAGC 689
||||
Sbjct 720 GAGC 723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33355473608
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5