BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488362
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15200.1 | Symbols: | Ribosomal protein S4 | chr5:4934883-4... 1341 0.0
AT4G12160.1 | Symbols: | pseudogene, 40S ribosomal protein S9 ... 235 5e-61
> AT5G15200.1 | Symbols: | Ribosomal protein S4 | chr5:4934883-4936408
REVERSE LENGTH=912
Length=912
Score = 1341 bits (726), Expect = 0.0
Identities = 784/812 (97%), Gaps = 4/812 (0%)
Strand=Plus/Plus
Query 1 CATTCGTCTCCTTCGTTCCTCTCTGCGTGCCCTAG-TATTTCAGATCGCCGATTTTGCAG 59
|||||||||| |||||||||||||||||||||||| || ||||||||||||| |||||||
Sbjct 1 CATTCGTCTCTTTCGTTCCTCTCTGCGTGCCCTAGTTA-TTCAGATCGCCGAATTTGCAG 59
Query 60 TAAGGAGACGAAGATATGGTGCACGTTTGCTACTACCGCAACTATGGAAAGACCTTCAAG 119
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TAAGGAGACGAAAATATGGTGCACGTTTGCTACTACCGCAACTATGGAAAGACCTTCAAG 119
Query 120 GGACCACGTCGTCCTTACGAGAAGGAGCGTCTTGACTCTGAATTGAAGCTTGTTGGTGAG 179
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 120 GGACCACGTCGTCCTTACGAGAAGGAGCGTCTTGATTCTGAATTGAAGCTGGTTGGTGAG 179
Query 180 TATGGTCTGCGTAACAAGCGTGAGCTCTGGAGAGTGCAGTATTCTCTTAGCCGTATCCGT 239
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 180 TATGGTCTGCGTAACAAGCGTGAGCTCTGGAGAGTGCAGTACTCTCTTAGCCGTATCCGT 239
Query 240 AATGCTGCAAGGGATCTTTTGACTCTCGATGAGAAGAGTCCAAGAAGGATCTTTGAGGGT 299
|||||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 240 AATGCTGCTAGAGATCTTTTGACTCTTGATGAGAAGAGTCCAAGAAGGATCTTTGAAGGT 299
Query 300 GAGGCTCTT-CTCCGTAGGATGAACCGTTACGGGCTTCTTGATGAGAGCCAGAACAAGCT 358
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAGGCT-TTGCTCCGTAGGATGAACCGTTACGGGCTTCTTGATGAGAGCCAGAACAAGCT 358
Query 359 CGATTACGTCTTGGCTTTGACTGTTGAGAACTTTCTTGAACGTCGTCTTCAGACTATTGT 418
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 359 CGATTACGTCTTGGCTTTGACTGTTGAGAACTTTCTTGAGCGTCGTCTTCAGACTATTGT 418
Query 419 GTTCAAGTCTGGTATGGCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTTCAAGTCTGGTATGGCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCA 478
Query 479 TATCAGGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTCACA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TATCAGGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTCACA 538
Query 539 GAAGCACATTGACTTTGCTCTGACCAGTCCCTTCGGTGGTGGCCGTCCAGGAAGAGTGAA 598
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 539 GAAGCACATTGACTTTGCCCTCACCAGTCCCTTCGGTGGTGGCCGTCCAGGAAGAGTGAA 598
Query 599 GAGAAGGAACGAGAAGTCTGCCTCCAAGAAAGCCTCTGGTGGTGGTGATGCAGACGGTGA 658
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 599 GAGAAGGAACGAGAAGTCTGCCTCCAAGAAAGCCTCAGGTGGCGGTGATGCAGACGGTGA 658
Query 659 TGACGAAGAGTAAATCTAAAGTCCCATCGTTTTAGCTATGAAGCAATCTGCTTTTTGATA 718
||||||||||||||||| ||||| || ||||||||||||||| |||||||||||||||||
Sbjct 659 TGACGAAGAGTAAATCTGAAGTCGCACCGTTTTAGCTATGAATCAATCTGCTTTTTGATA 718
Query 719 TTTTGTAGTATGCGACTTTGTTGTTCGTTTTCAGAGGATTGTTTTATGGTTTCTTTATTT 778
|||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 719 TTTTGTAGTAAGCAACTTTGTTGTTCGTTTTCAGAGGATTGTTTTATGGTTTCTTTCTTT 778
Query 779 TACCCTCGAGATTGCTGAACCTTTGGGTTATC 810
||| |||||||||||| |||||||||||||||
Sbjct 779 TACTCTCGAGATTGCTAAACCTTTGGGTTATC 810
> AT4G12160.1 | Symbols: | pseudogene, 40S ribosomal protein S9
(RPS9A), ribosomal protein S9.e - slime mold,PIR1:R3DO24;
blastp match of 56% identity and 7.2e-09 P-value to SP|P17959|RS9_TRYBB
Probable 40S ribosomal protein S9. {Trypanosoma
brucei brucei} | chr4:7272211-7272655 FORWARD LENGTH=445
Length=445
Score = 235 bits (127), Expect = 5e-61
Identities = 147/156 (94%), Gaps = 3/156 (2%)
Strand=Plus/Plus
Query 333 CTT-CTTGATGAGAGCCAGAACAAGCTCGATTACGTCTTGGCTTTGACTGTTGAGAACTT 391
||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 CTTGCTTGATGTGAGTCAGAACAAGCTCGATTACGTCTTGGCTTTGACTGTTGAGAACTT 225
Query 392 TCTTGAACGTCGTCTTCAGACTATTGTGTTCAAGTCTGGTATGGCTAAGTCTAT--CCAT 449
||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 226 TCTGGAGCGTCGTCTTCAGACTATTGTGTTCAAGTCTGGTATGGCTAAGTCTATATCCAT 285
Query 450 CACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGG 485
||||||||||||||||||| ||| ||||||||||||
Sbjct 286 CACTCTCGTGTCCTCATCACGCACAGGCATATCAGG 321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39433805395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5