BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488363
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15210.1 | Symbols: ATHB30, ZFHD3, HB30, ZHD8 | homeobox pro... 1596 0.0
> AT5G15210.1 | Symbols: ATHB30, ZFHD3, HB30, ZHD8 | homeobox protein
30 | chr5:4937579-4939007 REVERSE LENGTH=1429
Length=1429
Score = 1596 bits (864), Expect = 0.0
Identities = 1104/1211 (91%), Gaps = 51/1211 (4%)
Strand=Plus/Plus
Query 1 CTTCTCATCTCTTTCTTCCTCCATGAGAGACTTGAGTAATAATAATACACATA-TTTTAA 59
||||||||||||||||||||||||||||||||||||| | |||||| ||||| |||| |
Sbjct 1 CTTCTCATCTCTTTCTTCCTCCATGAGAGACTTGAGT-A-AATAAT--ACATAGTTTT-A 55
Query 60 AATTTCTCCTTCTCTAATCTTATATCTGTCCCAAATACATAAACCTATCCC--A-A---- 112
|||||| |||| ||||||| | ||||| ||||||||||||||||| ||||| | |
Sbjct 56 AATTTCCCCTTTTCTAATC-T-TATCTCTCCCAAATACATAAACCCATCCCAAAGATTTC 113
Query 113 -AG------ATTTAAAAACAGTTTTGTTTAGTGCAATCTTTACCTTATCTTCCTTCACTT 165
|| |||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 114 GAGTTTACAATTTAAAAACAGTTTTGTTTAGTGCAATCTTTACCTTATC-T--TT-ACTT 169
Query 166 C--TCATCTATTCTTCTTCTTCCTCCATCTCTAGAAAATCATAATACTTTTTGTTTCTTA 223
| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 170 CTATCATCTATTCTTCTTCTTCCTCCATCTCTAGAAAATTATAATACTTCTTGTTTCTTA 229
Query 224 AATCTTATTTGTATTCCAATAACCAAAACCCAAGTTTACAAAACA--------T-TTGTT 274
||||||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 230 AATCTTATTTGTATTACAATAACCAAAACCCAAGTTTACAAAACATTTCTTCTTCTTGTT 289
Query 275 TTT-GAAACCCTAAATGTTTTGAGTTGTCATGGATGTAAATGTAATAGCTACTACAACTA 333
||| ||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 290 TTTCGAAACCCTAAATGTTTTGAGTTGTCAT-G--G---ATGTAATAGCTACTACAACTA 343
Query 334 CTATAGTATCCGACTTGGATTCACGACAGCCCGAAACCGAAGCTCCGACCCGGATCCAGC 393
|||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||
Sbjct 344 CTATAGTATCCGACTTGGATTCACGACAACCCGAAATCGAAGCTCCGATCCGGATCCAGC 403
Query 394 CCGCGAAGCCTATTTCTTTCTCCAACGGCAAACGCTGCCACCACCATCATCTTGCGTCTG 453
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 404 CCGCGAAGCCTATTTCTTTCTCAAACGGCAAACGCTGCCACCACCATCATCTTGCATCTG 463
Query 454 AAGCGGTTGCGGTTGCGACTTATAAAGAATGTCTAAAGAATCATGCCGCAGGAATAGGCG 513
||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||
Sbjct 464 AAGCGGTTGCGGTTGCGACTTATAAAGAATGTCTAAAGAATCACGCAGCAGGTATCGGCG 523
Query 514 GTCACGCTTTAGACGGATGCGGCGAGTTTATGCCGTGTCCGTCGTTTAACACCAACGAAC 573
|||||||||||||||||||||||||||||||||||| |||||||||||| |||| || |
Sbjct 524 GTCACGCTTTAGACGGATGCGGCGAGTTTATGCCGTCACCGTCGTTTAACTCCAATGACC 583
Query 574 CCACGTCATTAACGTGCGCCGCCTGCGGTTGCCACCGTAACTTCCACCGCCGTGAAGAAG 633
|| | ||| |||||||||| || || ||||||||||||||||||||||||||||| || |
Sbjct 584 CCGCTTCACTAACGTGCGCTGCTTGTGGTTGCCACCGTAACTTCCACCGCCGTGAGGAGG 643
Query 634 ATCCATCTTCTCTTTCTGCCGTCGTCCCGGCGATCGAATTTCGTCCTCACAACCGTCACC 693
||||||||||||| |||||| ||||||| |||||||||||||| ||||||||||||||||
Sbjct 644 ATCCATCTTCTCTCTCTGCCATCGTCCCTGCGATCGAATTTCGACCTCACAACCGTCACC 703
Query 694 AACTTCCTCCGCCTCCTCCTCCTCATGC-GGTGGGGATTCGTAGTCCAGACGATGATGAT 752
| |||||||| || |||||||||||| | || ||||||||||||||||||||| ||||||
Sbjct 704 AGCTTCCTCCACCGCCTCCTCCTCAT-CTGGCGGGGATTCGTAGTCCAGACGACGATGAT 762
Query 753 TCAGCTTCTCCGCCGCCGATCTCGTCTTCTTACATGCTTCTTGCACTCTCCGGAGGAGGA 812
||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 763 TCAGCTTCTCCACCGCCGATCTCGTCTTCTTACATGCTTCTCGCACTCTCTGGAGGAAGA 822
Query 813 GGAGGAGCTAACACGGCGGTTCCGATGTCTAGGAAACGTTTTAGGACGAAGTTTAGTCAG 872
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 823 GGAGGAGCTAACACGGCGGTTCCAATGTCTAGGAAACGTTTTAGGACGAAGTTTAGTCAG 882
Query 873 TATCAGAAGGAAAAGATGTTTGAGTTCTCGGAGAGAGTTGGGTGGAGGATGCCGAAAGCT 932
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 883 TATCAGAAGGAGAAGATGTTCGAGTTCTCGGAGAGAGTTGGGTGGAGGATGCCGAAAGCT 942
Query 933 GATGACGTGGAT-GTTAAGGAGTTTTGTCGGGAGATTGGAGTTGATAAAAGCGTTTTCAA 991
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 GATGACGTGG-TGGTTAAGGAGTTTTGTCGGGAGATTGGAGTTGATAAAAGCGTTTTCAA 1001
Query 992 AGTGTGGATGCACAACAACAAGATTTCAGGACGCGGCGGAGCTAGAAGAGCTAACAGCGG 1051
|||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| ||||
Sbjct 1002 AGTGTGGATGCATAACAACAAGATTTCAGGACGCAGCGGCGCTAGAAGAGCTAACGGCGG 1061
Query 1052 AGGTA-TaggaggaggaggaggagATAGTCGTGAGAGTGTTGTTCCGACGAATGGGTCGT 1110
|| || ||| |||||||| ||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1062 AG-TAGTAGTAGGAGGAGTAGGAGATAGTCGTCAGAGTGTTGTTCCGACAAATGGGTCGT 1120
Query 1111 TTTCTTCGACGTGAGGAAAAGAACGGAAAACGTTGGAAAAGCGTCGTCGTTT-AGAGGCT 1169
||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||
Sbjct 1121 TTTCTTCGACGTGAGGAAAAGAATGGAAAGCGTTGAAAAAGCGTCGTCGTTTTAGAGGCT 1180
Query 1170 AATTCtttttt 1180
|||||||||||
Sbjct 1181 AATTCTTTTTT 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59738648550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5