BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488367
Length=758
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15220.1 | Symbols: | Ribosomal protein L27 family protein ... 990 0.0
AT2G16930.2 | Symbols: | Ribosomal protein L27 family protein ... 841 0.0
> AT5G15220.1 | Symbols: | Ribosomal protein L27 family protein
| chr5:4941244-4942483 REVERSE LENGTH=810
Length=810
Score = 990 bits (536), Expect = 0.0
Identities = 692/761 (91%), Gaps = 35/761 (5%)
Strand=Plus/Plus
Query 23 TCGCCGTCGTCATCTCCGGTCACGCTTGTCATCGTTCGCTATCT-ACCGGAATCGAAAAT 81
||||||||||||||||||| ||||||||||||||||||| || | | || |||||||| |
Sbjct 47 TCGCCGTCGTCATCTCCGGCCACGCTTGTCATCGTTCGCAAT-TAATCGAAATCGAAATT 105
Query 82 TTCCGATTCCTG--AAAAATGAATTTCTTAAACTCAGCAGCATCCATTTGCAGAAGAGTT 139
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 TTCCGATTCCTGAAAAAAATGAATTTCTTAAACTCAGCAGCATCCATTTGCAGAAGAGTT 165
Query 140 AGTCTGAGGGAACTGATCACTGAGGTTCCTGCTTATAGTGGCAGTAGCATTTCCGATGGT 199
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 AGTTTGAGGGAACTGATCACTGAGGTTCCTGCTTATAGTGGCAGTAGCATTTCCGATGGT 225
Query 200 TCTTCAAGTGGGTTGAGTTTGGTTTTGAAGCGTTGGGCTACTAAGAAAACCGCTGGTTCT 259
||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 226 TCTTCAAGTGGCTTGAGTTTGGTCTTCAAGCGTTGGGCTACTAAGAAAACTGCTGGTTCT 285
Query 260 ACAAAGAATGGTCGTGACTCTAATCCAAAGTTTCTTGGTGTTAAGAAATTCGGAGGAGAG 319
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 286 ACAAAGAACGGTCGTGACTCTAATCCCAAGTTTCTCGGTGTTAAGAAATTCGGAGGAGAG 345
Query 320 AGTGTGATACCTGGAAACATCATAGTTCGTCAACGTGGAACTCGGTTTCATCCTGGAGAC 379
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 346 AGTGTGATACCAGGAAACATCATAGTTCGTCAACGGGGAACTCGGTTTCATCCTGGAGAC 405
Query 380 TATGTCGGGATCGGTAAGGACCATACTCTGTTTGCCTTGAAGGAAGGACGAGTCAGGTTC 439
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 406 TATGTGGGGATTGGTAAGGACCATACTCTGTTTGCATTGAAGGAAGGACGAGTCAGGTTC 465
Query 440 GAGAAAAGCAAGATAACAGGACGCAAATGGATTCATGTTGATCCAACAGGTGGTCATGTT 499
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 GAGAAAAGCAAGATTACAGGACGCAAATGGATTCATGTTGATCCAACAGGTGGTCATGTT 525
Query 500 CTTCACCCTATCTACAGAAAAGCTGCAGCTGCAAAATCGACTAAGTTGAAGACAGCTTCA 559
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 526 CTTCACCCTATCTACACAAAAGCTGCAGCTGCTCAATCGACTAAGTTGAAGACAGCTTCA 585
Query 560 TAGTCGTGAAAACACATTGATTCAACCATCTAAACGTG-T---CAT-------A--T--- 603
|||||||||| || |||| |||| ||||||||||| | ||| | |
Sbjct 586 TAGTCGTGAATACTGATTG---CAACAATCTAAACGTGGTTTTCATTTCCTTTAGATCAT 642
Query 604 G--ATCTCTCGAGTATAAGATGATGGTATCTTAGAACAGCAAC-ACTCAGTTCAACAACA 660
| |||||||||||| ||||||||| ||||||||| ||| ||| ||||| ||||| ||||
Sbjct 643 GTGATCTCTCGAGTAAAAGATGATGCTATCTTAGAGCAG-AACCACTCAATTCAATAACA 701
Query 661 TCTGCTGTTTTGTTTCCCT--AGTCTCTGTCTGGATTTTGATGATGGGCTT-GTTTGGAT 717
||||||||||||||||||| ||||| ||||||||||||||||| |||||| ||||||||
Sbjct 702 TCTGCTGTTTTGTTTCCCTCTAGTCTTTGTCTGGATTTTGATGAAGGGCTTTGTTTGGAT 761
Query 718 TCAACAAATCAAGttttttttttttCGGAAATAGATGTTAA 758
||||||||||||||||| || ||||||||||||||||
Sbjct 762 TCAACAAATCAAGTTTTATT-----CGGAAATAGATGTTAA 797
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 TTCCATCCTAATCGCGCTTCCGTCGCCG 28
||||||||||||||||||||||||||||
Sbjct 7 TTCCATCCTAATCGCGCTTCCGTCGCCG 34
> AT2G16930.2 | Symbols: | Ribosomal protein L27 family protein
| chr2:7341120-7342302 FORWARD LENGTH=743
Length=743
Score = 841 bits (455), Expect = 0.0
Identities = 564/614 (92%), Gaps = 17/614 (3%)
Strand=Plus/Plus
Query 95 AAAATGAATTTCTTAAACTCAGCAGCATCCATTTGCAGAAGAGTTAGTCTGAGGGAACTG 154
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 92 AAAATGAATTTCTTAAACTCAGCTGCATCCATTTGCAGAAGAGTTAGTCTGAGGGAACTC 151
Query 155 ATCACTGAGGTTCCTGCTTATAGTGGCAGTAGCATTTCCGATGGTTCTTCAAGTGGGTTG 214
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 152 ATCACTGAGGTTCCTGCTTATACTGGCAGCAGCATTTCCGATGGTTCTTCAAGTGGGTTG 211
Query 215 AGTTTGGTTTTGAAGCGTTGGGCTACTAAGAAAACCGCTGGTTCTACAAAGAATGGTCGT 274
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 212 AGTTTGGTCTTGAAGCGTTGGGCTACTAAGAAAACCGCTGGTTCTACAAAGAACGGTCGT 271
Query 275 GACTCTAATCCAAAGTTTCTTGGTGTTAAGAAATTCGGAGGAGAGAGTGTGATACCTGGA 334
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 GACTCTAATCCCAAGTTTCTTGGTGTTAAGAAATTCGGAGGAGAGAGTGTGATACCTGGA 331
Query 335 AACATCATAGTTCGTCAACGTGGAACTCGGTTTCATCCTGGAGACTATGTCGGGATCGGT 394
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 332 AACATCATAGTTCGTCAACGTGGAACTCGGTTTCATCCTGGAGACTATGTCGGGATTGGT 391
Query 395 AAGGACCATACTCTGTTTGCCTTGAAGGAAGGACGAGTCAGGTTCGAGAAAAGCAAGATA 454
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 392 AAGGACCATACTCTGTTTGCATTGAAGGAAGGACGAGTCAGGTTCGAGAAAAGCAAGATT 451
Query 455 ACAGGACGCAAATGGATTCATGTTGATCCAACAGGTGGTCATGTTCTTCACCCTATCTAC 514
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 452 ACAGGACGCAAATGGATTCATGTTGATCCAATAGGTGGTCATGTTCTTCACCCTATCTAC 511
Query 515 AGAAAAGCTGCAGCTGCAAAATCGACTAAGTTGAAGACAGCTTCATAGT---CGT-GAAA 570
| |||||| |||||||||||||||||||||||||| |||||||||||| | | || |
Sbjct 512 ACAAAAGCCGCAGCTGCAAAATCGACTAAGTTGAACACAGCTTCATAGCAAAC-TCGACA 570
Query 571 A-C-ACAT-TGA-TTCAAC-CATCTAA-ACG-TGTCATATGATCTCTCGAGTATAAGATG 623
| | | | || ||| | ||| | | | | ||||||||||||||||| ||||||
Sbjct 571 ATCTAAACGTGTCTTCGTTTCTTCTTTTA-GAT-T-ATATGATCTCTCGAGTAAAAGATG 627
Query 624 ATGGTATCTTAGAACAGCAACACTCAGTTCAACAACATCTGCTGTTTTGTTTCCCT--AG 681
|||||||||||||| | ||||||||| ||||| ||| |||||||||||||||||| ||
Sbjct 628 ATGGTATCTTAGAATATCAACACTCATTTCAATTACAGCTGCTGTTTTGTTTCCCTCTAG 687
Query 682 TCTCTGTCTGGATT 695
||||||| ||||||
Sbjct 688 TCTCTGTTTGGATT 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36821629751
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5