BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488371
Length=1421
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15240.1 | Symbols: | Transmembrane amino acid transporter ... 2244 0.0
> AT5G15240.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr5:4947667-4950340 FORWARD LENGTH=1496
Length=1496
Score = 2244 bits (1215), Expect = 0.0
Identities = 1356/1425 (95%), Gaps = 6/1425 (0%)
Strand=Plus/Plus
Query 1 CTtctctctatctatctccttcgtctctcgatctctccg--tctctctctttgtctctTC 58
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 CTTCTCTCTATCTATTTCCTTCGTCTCTCGATCTCTCCGTCTCTCTCTCTTTGTCTCTTC 60
Query 59 GACATCGAAAGAGCAGAGTCAAAGACTAAACAATTATGAGCGAGGAGAAAGATTACATGT 118
|| ||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 61 GATATCCAAAGAGCAGAGTCAAAGACTAAACAAGTATGAGCGAGGACAAAGATTACATGT 120
Query 119 CGGAGCCATTTATCGTTAAGAAGATTGATGATGAAGAAGCATCGCTTGATGATTATAATT 178
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 121 CGGAGCCATTTATCGTTAAGAAGATTGATGATGAAGAATCATTGCTTGATGATTATAATC 180
Query 179 CACAGGGCAATACTTCTTTCTCCAAGACTTGTTTCCATGGCATTAACGCTTTATCAGGTG 238
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 CACAGGGCAATACTTCTTTCTCCAAGACTTGTTTCCATGGCATTAACGCCTTATCAGGTG 240
Query 239 TGGGTATATTATCGGTTCCTTATGCTTTAGCATCCGGAGGATGGCTAAGTTTGATCATAC 298
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 TGGGTATATTATCGGTCCCTTATGCCTTAGCATCCGGAGGATGGCTAAGTTTGATCATAC 300
Query 299 TTTTCACCGTAGCGATCACAACTTTCTACTCTGCCATTCTCATTAAGAGATGTATGGAAA 358
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 TTTTCACCGTAGCGATCACAACTTTCTACTGTGCCATTCTCATTAAGAGATGTATGGAAA 360
Query 359 TGGATCCACTTCTTAGATCTTACCCGGACATTGGCTACAAAGCCTTTGGAAACACAGGAC 418
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGGATCCACTTCTTAGATCATACCCGGACATTGGCTACAAAGCCTTTGGAAACACAGGAC 420
Query 419 GTGTCGTCGTCTCCATCTTCATGAACCTCGAGCTTTACCTAGTCGCCACTAGTTTCTTGA 478
|||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 421 GTGTTATCGTCTCCATCTTCATGAACCTCGAGCTTTACCTAGTTGCAACTAGTTTCTTGA 480
Query 479 TCTTAGAAGGTGACAACCTTAACAACCTCTTCTCAAACGTTGGAGTCAACTTCATGGGGC 538
|| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 481 TCCTAGAAGGTGACAACCTTAACAAACTCTTCTCAAACGTTGGACTCAACTTCATGGGGC 540
Query 539 TTGAATTCCAAGGCAAGCAAATGTTCATCGTCCTTGTAGCTCTCATTATTCTTCCCTCGG 598
||||||||||||||||||||||||||||| || | || ||||||||||||||||| ||||
Sbjct 541 TTGAATTCCAAGGCAAGCAAATGTTCATCATCATGGTGGCTCTCATTATTCTTCCTTCGG 600
Query 599 TTTGGTTAGACAATATGAGGATTCTTTCTTATATTTCCGCGAGTGGTGTCTTTGCTTCC- 657
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 601 TTTGGTTAGACAATATGAGGATTCTTTCTTATGTTTCCGCGAGTGGTGTCTTTGCTTCCG 660
Query 658 GGGTTGATTCTTGCTTCTATCTTTTCGGTTGGAGCTTTTGAAGGAGTAGGGTTCAAGAAC 717
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 661 GGGTT-ATTCTTGCTTCTATCTTTTCGGTTGGAGCTTTTGAAGGCGTAGGGTTCAAGAAC 719
Query 718 AATGACTCAGAGGTCTTTCGTCTTAATGGAGTCGCTACTTCGGTGAGCTTATACGCGTTT 777
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 720 AATGACTCAGAGGTCTTTCGACTTAATGGAGTCGCTACTTCGGTGAGCTTATACGCGTTT 779
Query 778 TGTTACTGCGCTCATCCGGTTTTCCCAACTCTAGACACTTCCATGAAGAACAAACGGCAA 837
||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||| |||
Sbjct 780 TGTTATTGCGCTCATCCAGTTTTCCCAACTCTATACACTTCCATGAAGAACAAACGCCAA 839
Query 838 TTCTCAAACGTTATGATTATATGTTTCACTATATGCACATTCATATATGCATCAGTGGCG 897
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 840 TTCTCAAACGTTATGATTATATGTTTCACAATATGCACCTTCATATATGCATCAGTGGCG 899
Query 898 ATATTGGGGTACTTAATGTATGGATCAAATGTTGAATCACAGATCACACTGAATCTTCCT 957
||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 900 GTATTGGGTTACTTAATGTATGGATCAGATGTTGAATCACAGATCACTTTGAATCTTCCT 959
Query 958 ACTGATAAGCTTAGTTCAAAAGTGGCGATATGGACTACATTGGTCAACCCAATAGCTAAG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 ACTGATAAGCTTAGTTCAAAAGTGGCGATATGGACTACATTGGTCAACCCAATAGCTAAG 1019
Query 1018 TTTGCTCTCATGGTTACACCAATTATTGACGCAATGAGAAGCCGGTTTTCTCGATTTTTG 1077
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1020 TTTGCTCTCATGGTTACACCTATTATTGACGCAATGAGAAGCCGGTTTTCTCGAGTTTTG 1079
Query 1078 CCTAATAAAAGAGCTTCCGGGTTTTTACTTAGTACGATGTTGGTTACTAGCAATGTGATT 1137
||||||||||||||||| || ||||| || ||||| || | ||||||||||||||||||
Sbjct 1080 CCTAATAAAAGAGCTTCTGGATTTTTGCTAAGTACAATACTAGTTACTAGCAATGTGATT 1139
Query 1138 GTGGCATTGCTTCTTCCATTTTTCGGTGATCTTATGAGTCTTGTCGGAGCATTCTTGAGC 1197
||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1140 GTGGCATTGCTTCTTCCGTTTTTTGGTGATCTTATGAGTCTTGTGGGAGCATTCTTGAGC 1199
Query 1198 GCTTCCGCATCGGTTATATTGCCATGTTTGTGTTACTTAAAGATTTCCGGGAAATATCAA 1257
|| |||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 1200 GCATCCGCATCGGTTATATTGCCATGTTTATGTTACTTAAAGATCTCTGGGAAATATCAA 1259
Query 1258 AGACTCGGATTCGAAACACTGGTGCTCATCGGAATCATTCTAACCGGTATCGTGGTTGTG 1317
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1260 AGACTCGGATTCGAAACATTGGTGCTCATCGGAATCACTCTAACCGGTATCGTGGTTGTG 1319
Query 1318 ATAACGGGAACTTACCAAGCGATCAAGGACATTTTTGGCCGATTTTGAAATCCCAATAGG 1377
||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1320 ATAACCGGAACTTACCAAGCGGTCAAGGACATTTTTGGTCGATTTTGAAATCCCAATAGG 1379
Query 1378 TGAAGTCTT-GCTTATAGAATATTTGTTTAGGAATATATTTGTAC 1421
|||||| || ||||||||| |||||||||||||| ||||||||||
Sbjct 1380 TGAAGT-TTAGCTTATAGAGTATTTGTTTAGGAAGATATTTGTAC 1423
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70029760275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5