BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488373
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15260.1 | Symbols: | Ribosomal protein L34e superfamily pr... 1570 0.0
> AT5G15260.1 | Symbols: | Ribosomal protein L34e superfamily
protein | chr5:4953440-4954932 REVERSE LENGTH=1384
Length=1384
Score = 1570 bits (850), Expect = 0.0
Identities = 1092/1200 (91%), Gaps = 52/1200 (4%)
Strand=Plus/Plus
Query 20 TGTTCATCTTGTTTCAACCCTCGCTTACGTTTCCGACTTCTCCACATCTC---TC-G-AT 74
||||| ||| |||||||||||||| |||||| ||||||||||||||||| || | |
Sbjct 209 TGTTC-TCTACTTTCAACCCTCGCTAACGTTTTCGACTTCTCCACATCTCGATTCAGCTT 267
Query 75 -T-C--AG--C---TTCGATTAGA-TTTGAATTGGGAAGTTGACAAGTTTGAAGATTTTT 124
| | | | |||||||||| |||||||||||||| |||||||||||||||||| |
Sbjct 268 CTCCTTCGTCCAAATTCGATTAGATTTTGAATTGGGAAGCTGACAAGTTTGAAGATTTCT 327
Query 125 CATTTAATGGATTGATCTGATTTCGAAATTTTCA-TTACCCGTTTCGGGTTCAATTGATT 183
||||| ||||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 328 CATTTGATGGATTGATCTGATTTCGCAATTTTCATTTTCCCGTTTCGGGTTCAATTGATT 387
Query 184 TCGATCAGATTGAACCCAGT--TGTTCTCAATCCAAGGCTACTTCAATTGGATCTGTTTC 241
|||||||||||||||||| | || |||| || ||||||||| ||| ||||||||||
Sbjct 388 TCGATCAGATTGAACCCAATCCAAATC-CAAT-CAGGGCTACTTCGATTTGATCTGTTTC 445
Query 242 CTCaaaaaaaaGGATTCGACTTTCTCTGAGATGGTATATTTCCAGAACTCAATC-CCCGT 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 446 CTC--AAAAAAGGATTCGACTTTCTCTGAGATGGTATATTTCCAGAACTCAATCTCCC-T 502
Query 301 CGTAGACCAATCTCCAATCATGGCTCAATCAGCAGATTTTCATCATCATTCAAAACAATC 360
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 503 CGTAGACCAATCTCCAATCATGGCTCACTCACCAGATTTTCATCATCATTCAAAACAATC 562
Query 361 AAG-A--AGCAGCACCAACAGAAAGTCATCATCATCGTCGTCAAGCTGTTCTTCACATTT 417
||| | ||||||| |||||||||| |||||| |||||||||||||||||| ||||
Sbjct 563 AAGAACCAGCAGCAGCAACAGAAAG---TCATCA---TCGTCAAGCTGTTCTTCAAATTT 616
Query 418 C-CAAGTCTGCTGCGACGGATCTAGATCAGCTGCAATCGATGTTTTGATCTTAATCGCTG 476
| | || ||||| |||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 617 CTC-TGTTTGCTGTGACGGATCTAGATCAGCTGCTATCGATGTTGTGATCTTAATCGCTG 675
Query 477 TGATCACATCTTCCGGGTTCTTGATCTTCCCTTACATCAAATTCATCACTGTCAAATCTG 536
|||||||||| |||||||| || ||||||||||||||||||||||||||| |||||||||
Sbjct 676 TGATCACATCCTCCGGGTTTTTAATCTTCCCTTACATCAAATTCATCACTATCAAATCTG 735
Query 537 TTGAAATCTTCTCAGAGCTCTCTTGTTTAGTCAAAGAAGAGATTTTGCGTAACCCTGATC 596
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 736 TTGAAATCTTCTCTGAGCTCTCTTGTTTAGTGAAAGAAGAGATTTTGCGTAACCCTGATC 795
Query 597 CAATTGTGTACGGTTTGATAGCTTTGAGTATCTCGTGTACTGCGTTATCGGCTTGGATGA 656
||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 796 CAATTGTCTACGGTTTAATAGCTTTGAGTATCTCGTGTACTGCGTTATCTGCTTGGATGA 855
Query 657 TTGTTATACT-CTTGTGTAGTCGTCATCGATGTGGGAAACCCAATTGCAAAGGGCTTAGG 715
|||||||||| | |||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 856 TTGTTATACTAC-TGTGTAGTCGTCATCGATGTGGGAAACCGAACTGTAAAGGGCTTAGG 914
Query 716 AAAGCTAATGCTGAGTTTGATATTCAGTTAGAGACTGAGGATTGTGTTAAGAGCTCTAAT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 AAAGCTAATGCTGAGTTTGATATTCAGTTAGAGACTGAGGATTGTGTTAAGAGCTCTAAT 974
Query 776 AGTGGCAAGAGTGTTAGCAAGAAGGGTTTGTTTGAGTTGCCTCGTGACCATCACCGTGAG 835
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 975 AGTGGCAAGAGTGTTAGTAAGAAGGGTTTGTTTGAGTTGCCTCGTGATCATCACCGTGAG 1034
Query 836 TTAGAGGCGGAGTTGAAGAAGATGGCTCCACCGAATGGGAGAGCCGTGCTGGTTTTTCGG 895
|||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||
Sbjct 1035 TTAGAGGCGGAGTTGAAGAAGATGGCTCCACCTAATGGGCGAGCCGTGCTTGTTTTTCGG 1094
Query 896 GCGAAATGTGGGTGTTCTGTTGGGAGATTAGAGGTTCCTGGACCTAAGAAGCAGCAACTG 955
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 GCTAAATGTGGGTGTTCGGTTGGGAGATTAGAGGTTCCTGGACCTAAGAAGCAGCAACTG 1154
Query 956 CAGCAAAGGAAGGTCAAGAAGTGATG-AGAAAAGGTTTAATCTTTTTGAGGTAAAGATGG 1014
|||||||||||||| ||||| ||| | | ||| |||| |||||||||||||||||| |
Sbjct 1155 CAGCAAAGGAAGGTTAAGAAATGAAGTATAAA-GGTTCAATCTTTTTGAGGTAAAG--G- 1210
Query 1015 GATCATTACAGGTTatgatgatgatgatgatTACTTTGATTAGCTTATAAACAACCtttt 1074
| | | ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1211 --T--T-A----TTATGATGATGATGATGATTACTTTGATTAGTTTATAAACAACCTTTT 1261
Query 1075 tttctttttGGTTTAGTTATTTTCACAAGAACTTCTTACAGAAACTAATACTATGTTAAA 1134
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1262 TTTCTTTTGGGTTTAGTTATTTTCAGAAGAACTTCTTACAGAAACTAATACTATGTTAAA 1321
Query 1135 TCTCCATGTGTTTAAATAAAAGCTTTACAAGGATATTACAAGAGAAAATGGTTAACAGTG 1194
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1322 TCTCCATGTGTTTAAATAAAAGCTTTACAAGGATATTGCAACAGAAAATGGTTAACAGTG 1381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58634236560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5