BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488375
Length=2456
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15270.2 | Symbols: | RNA-binding KH domain-containing prot... 2748 0.0
> AT5G15270.2 | Symbols: | RNA-binding KH domain-containing protein
| chr5:4958337-4962013 FORWARD LENGTH=2806
Length=2806
Score = 2748 bits (1488), Expect = 0.0
Identities = 1693/1786 (95%), Gaps = 37/1786 (2%)
Strand=Plus/Plus
Query 1 AACAACCGATTAAACTC-GGCGCAAACCCTAGAAACACTGATTTA-CCCCAAATCGGAAG 58
|||||| |||||| ||| || |||||||||||||| ||||| ||| ||||||||| ||||
Sbjct 1 AACAACAGATTAAGCTCAGG-GCAAACCCTAGAAATACTGA-TTACCCCCAAATCCGAAG 58
Query 59 AAACGATTTCGTCTGGAGATATCAAAGA-TT-----T-T------A-C----AATGTCAC 100
|||||||||||||||||||||||||||| || | | | | ||||||||
Sbjct 59 AAACGATTTCGTCTGGAGATATCAAAGATTTGACAATGTCACCGGATCATAGAATGTCAC 118
Query 101 CGGATCATAGAGATAGCCATAGAAAGAGGTCTCGTCCTCAGTCTGACTACGATGATAACG 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CGGATCATAGAGATAGCCATAGAAAGAGGTCTCGTCCTCAGTCTGACTACGATGATAACG 178
Query 161 GTGGAAGCAAACGAAGATATCGTAGTGATGATAGAGATTCACTTGTAATTGATCGCGATG 220
||||||||||||| ||||||||| |||| ||||||||||||||||| |||||||||||||
Sbjct 179 GTGGAAGCAAACGGAGATATCGTGGTGACGATAGAGATTCACTTGTGATTGATCGCGATG 238
Query 221 ATACTGTATTCCGATATCTGTGCCCGGTTAAAAAGATTGGGAGTGTTATTGGTAGAGGTG 280
| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 239 ACACTGTATTCCGATACCTGTGCCCGGTAAAAAAGATTGGGAGTGTTATTGGTAGAGGAG 298
Query 281 GTGAGATTGTCAAGCAATTGAGG-ATGGACACTAGATCGAAAATTAGAATAGGGGAAGCA 339
|||| |||||||||||||||||| || || ||||||||||||||||||||||| ||||||
Sbjct 299 GTGATATTGTCAAGCAATTGAGGAAT-GATACTAGATCGAAAATTAGAATAGGCGAAGCA 357
Query 340 ATTCCGGGATGTGATGAACGTGTGATTACGATCTATAGCCCTAGTGATGAGACCAATGCC 399
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 358 ATTCCGGGATGTGATGAACGTGTTATTACTATCTATAGCCCTAGTGATGAGACCAATGCC 417
Query 400 CTTGGAGATGGAGAGAAAGTTCTTTCTCCTGCGCAGGATGCTTTGTTCAGGATTCATGAT 459
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 418 TTTGGAGATGGAGAGAAAGTTCTTTCTCCTGCGCAGGATGCTTTGTTTAGGATTCATGAT 477
Query 460 AGAGTAGTTGCTGATGATGCGCA-AAGTGAAGATAGCTCTGAAGGAGAGCAGCAAGTTAC 518
||||||||||||||||||||| | ||||||||||||| ||||||||||| ||||||||||
Sbjct 478 AGAGTAGTTGCTGATGATGCG-AGAAGTGAAGATAGCCCTGAAGGAGAGAAGCAAGTTAC 536
Query 519 TGCTAAGCTGCTTGTTCCTTCGGATCAGATTGGATGTATTCTTGGGAGAGGTGGCCAAAT 578
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 537 TGCTAAGCTGCTTGTACCTTCGGATCAGATTGGTTGTATTCTTGGGAGAGGTGGCCAAAT 596
Query 579 TGTTCAGAACATTCGGAGTGAAACTGGTGCTCAAATTCGCATCATCAAGGACAGAAACAT 638
||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||
Sbjct 597 TGTTCAGAACATTCGGAGTGAAACTGGTGCTCAGATTCGTATCGTCAAGGACAGAAACAT 656
Query 639 GCCTCTATGTGCCTTGAATTCAGATGAGCTCATTCAGATATCTGGAGAAGTGCTCATTGT 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GCCTCTATGTGCCTTGAATTCAGATGAGCTCATTCAGATATCTGGAGAAGTGCTCATTGT 716
Query 699 TAAGAAGGCTCTGCATCAGATTGCGTCTCGCCTTCACGAAAATCCCTCACGTAGTCAGAA 758
||||||||| |||| ||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 717 TAAGAAGGCACTGCTTCAGATTGCTTCTCGCCTTCATGAAAATCCCTCACGTAGTCAGAA 776
Query 759 CCTACTTTCTTCTGCAATTTCCGGCGGATATCCTTCTGGCTCGCTCATGAGCCATGCGGG 818
|||||||| | | | |||||| ||||||||| ||||||| |||||||||||||||||
Sbjct 777 TCTACTTTC-T-T-C---TTCCGGTGGATATCCTGCTGGCTCACTCATGAGCCATGCGGG 830
Query 819 TGGTCCTCGACTTGTAGGAATAGCACCACTGATGGGTTCCTATGGACGTGATGGAGGAGA 878
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 831 TGGTCCTCGACTTGTAGGTTTAGCACCACTGATGGGTTCCTATGGACGTGATGCAGGAGA 890
Query 879 TTGGTCACGCCCTTTATACCAACCTCCAAGAAATGACCCACCGGCAACAGAGTTCTTTAT 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 TTGGTCACGCCCTTTATACCAACCTCCAAGAAATGACCCACCGGCAACAGAGTTCTTTAT 950
Query 939 TCGGCTAGTTTCCCCAGTTGAAAACATTGCAAGTGTTATAGGGAAAGGTGGTGCTCTAAT 998
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 951 TCGGCTAGTTTCCCCAGTTGAAAACATTGCAAGTGTTATAGGAAAAGGTGGTGCTCTAAT 1010
Query 999 CAATCAGCTTCGACAGGAGACCAGAGCAACCATTAAAGTTGATAGCTCCAGAACTGAAGG 1058
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1011 CAATCAGCTTCGACAGGAAACCAGAGCAACCATTAAAGTTGATAGCTCTAGAACTGAAGG 1070
Query 1059 AAACGATTGTTTAATAACTATTTCAGCAAGAGAGGTTTTTGAGGATGCGTATTCCCCAAC 1118
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1071 AAACGATTGTTTGATAACTATATCAGCAAGAGAGGTTTTTGAGGATGCGTATTCCCCAAC 1130
Query 1119 CATTGAAGCAGTTATGCGGCTGCAACCTAAATGCAGTGACAAGGTGGAAAGAGATTCTGG 1178
|||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1131 CATTGAAGCAGTAATGCGGCTGCAACCAAAATGCAGCGACAAGGTGGAAAGAGATTCTGG 1190
Query 1179 ACTTGTTTCATTCACCACTCGTCTTCTTGTGCCAAGTTCTAGGATTGGTTGTATCCTTGG 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 ACTTGTTTCATTCACCACTCGTCTTCTTGTGCCAAGTTCTAGGATTGGTTGTATCCTTGG 1250
Query 1239 TAAAGGAGGAGCCATCATAACTGAGATGAGAAGAATGACCAAAGCTAACATCCGCATACT 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 TAAAGGAGGAGCCATCATAACTGAGATGAGAAGAATGACCAAAGCTAACATCCGCATACT 1310
Query 1299 CGGGAAGGAAAATCTTCCAAAAGTTGCATCTGACGATGATGAGATGGTTCAGATTTCTGG 1358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 TGGGAAGGAAAATCTTCCAAAAGTTGCATCTGACGATGATGAGATGGTTCAGATTTCTGG 1370
Query 1359 AGAACTTGACGTTGCCAAGGAAGCTCTCATACAAATTACATCAAGATTAAGAGCCAATGT 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 AGAACTTGACGTTGCCAAGGAAGCTCTCATACAAATTACATCAAGATTAAGAGCCAATGT 1430
Query 1419 TTTTGACCGAGAAGGTGCTGTTTCTGCACTTATGCCGGTGTTGCCTTATGTTCCTGTTGC 1478
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1431 TTTTGACCGAGAAGGTGCTGTTTCTGCACTTATGCCGGTCTTGCCTTATGTTCCCGTTGC 1490
Query 1479 ACCAGATGCTGGTGATAGATTGGACTATGATAGTAGAGATAGCAGAAGACTTGAACGCGG 1538
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1491 ACCAGATGCTGGTGATAGATTTGACTATGATAGTAGAGATAGCAGAAGACTTGAACGCGG 1550
Query 1539 GAATCCTTATCCTGGTGGTTATGGCTCAAGTGGCTTT-TCTGCTGAAGGGTACTCGCCAT 1597
||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| |
Sbjct 1551 GAATCCTTATCCTGGTGGTTATGGCTCAAGTGG-TGTGTCTGCTGAAGGGTACTCGCCTT 1609
Query 1598 ATGGTGCGCCGGTTGGTGGTAGTAGTAGTACTCCATATGGAGTGTATGGAGGTTATGCAT 1657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 ATGGTGCGCCGGTTGGTGGTAGTAGTAGTACTCCATATGGAGTGTATGGAGGTTATGCAT 1669
Query 1658 CTGGACGCAGTAGCAGTTCTGGGTTATCAAGCCATTCTTCTACCTACCGACGCAGAAACT 1717
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1670 CTGGACGCAGTAGCAGTTCTGGGTTATCAAGTCATTCTTCAACCTATCGACGCAGAAACT 1729
Query 1718 ATGATTACTAGAAGCTATTGGTTG-G-TGATTAAAAAGTGTGAGAT 1761
|||||||||||||||||||||| | | ||||||||||| || ||||
Sbjct 1730 ATGATTACTAGAAGCTATTGGTGGAGGTGATTAAAAAG-GTTAGAT 1774
Score = 1026 bits (555), Expect = 0.0
Identities = 679/734 (93%), Gaps = 28/734 (4%)
Strand=Plus/Plus
Query 1747 TAAAA-AGTGTGAGATCCTGAAGCCTGAAGCCAACCCCACAGCCCACAGTTGAAGCCTTT 1805
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1920 TAAAACAGTGTGAGATCCTGAAGCCTGAAGCCAA-CCCACAGCCCACAGTTGAAGCC-TT 1977
Query 1806 TTCACCAAACAAGATGACAAAGCTGAACCACCAAACTCTACCTAGGAGAACTGATTACAT 1865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 TTCACCAAACAAGATGACAAAGCTGAACCACCAAACTCTACCTAGGAGAACTGATTACAT 2037
Query 1866 GTGGATGAGATATTTAAGTTTCTTTCAAAACTTTCCATGTCCGCTTGTAACCAAAAATAC 1925
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||
Sbjct 2038 GTGGATGAGATATTTAAGTTTGTTTCAAAACTTTCCATGTCCTCTTGTAACCAAAA-TAC 2096
Query 1926 TGCCAAGTTCCTACCCATTAAACCTTATCCAGTTGGCCTTGGCTGTAATGCTGTCTATCT 1985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2097 TGCCAAGTTCCTACCCATTAAACCTTATCCAGTTGGCCTTGGCTGTAATGCTGTCTATCT 2156
Query 1986 TTCACTTTACCTTTGTCTTTCCTTGGATTAGATTCAGAAAACCTTAGTTTGGTTGTG--T 2043
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2157 TTCAGTTTACCTTTGTCTTTCCTTGGATTAGATTCAGAAAACCTTAGTTTGGTTGTGCGT 2216
Query 2044 AGTTCCGTTTTGTATGAATTATATAATTTTAAACGCTCTCATGTACTGGTTTTGCTTACA 2103
||||||||||||||||||||||||| | ||||| ||||||||||||||||| |||||||
Sbjct 2217 AGTTCCGTTTTGTATGAATTATATA-TGTTAAAAGCTCTCATGTACTGGTTAAGCTTACA 2275
Query 2104 GCATGCTTAAGCCTCTCTC--TGACAGGTTTTGGTATCACAAACTATT--ACCTTGTAAT 2159
||| ||||||||||||||| |||||||||| || ||||||||||||| ||||| ||||
Sbjct 2276 GCACGCTTAAGCCTCTCTCCCTGACAGGTTTCGGAATCACAAACTATTTTACCTTATAAT 2335
Query 2160 ---CTCTCAGAGTTTTAAAAGATCTTATGCAGGGAGAGAGATGAGTGAGAATCTATTGCT 2216
|||||||| |||||||||||| |||||||||| |||||| ||||||||||| ||| |
Sbjct 2336 AATCTCTCAGATTTTTAAAAGATCGTATGCAGGGAAAGAGATAAGTGAGAATCTCTTGGT 2395
Query 2217 TCTTGTCGACATTGTTCAGGT-------------GG-CATATCAATCTGTTGTGCCCATT 2262
||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 2396 TCTTGTCGACATTGTTCAGGTTAATCAACCACTTGGGCATATCAATCTGTTGTGCCCATT 2455
Query 2263 TGGTCCACTTGAAAGGTATATACAATTATTCTTCTCTCTTTGTTGTTTCTTTGCACATAT 2322
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2456 TGGTCCACATGAAAGGTATATACAATTCTTCTTCTCTCTTTGTTGTTTCTTTGCACATAT 2515
Query 2323 ACTTCTCTGCCAGCAGTTAAAAGACAGGTTGCTATTACTGGAAGATTGTTGTTTTTGGAA 2382
||||||||| ||||||| ||||||||||||||||| |||||||||||| ||||||||||
Sbjct 2516 GCTTCTCTGCTAGCAGTTCAAAGACAGGTTGCTATTTCTGGAAGATTGTCGTTTTTGGAA 2575
Query 2383 ACCAATCTTTTGACCATTAGATTGTCGATAGCTCCATCTCGCCATAAGTTTGCACGGTGA 2442
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 2576 ACCAATCTTTTGACCATTAGATTGTCGATAGCTCCATCTCGCCATCAGTTTGCGCGGTGA 2635
Query 2443 ACACTCGGAAAGAT 2456
|||||| |||||||
Sbjct 2636 ACACTCCGAAAGAT 2649
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121855504547
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5