BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488377
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15290.1 | Symbols: | Uncharacterised protein family (UPF04... 1179 0.0
> AT5G15290.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr5:4967011-4968035 FORWARD LENGTH=836
Length=836
Score = 1179 bits (638), Expect = 0.0
Identities = 725/767 (95%), Gaps = 6/767 (1%)
Strand=Plus/Plus
Query 17 ACCTAACTTCCTTCTCAAGAAACCCCGAAAACCTTAAAGAGCAAAGAGAGAAAATGAAGT 76
|||||||||||||| ||||||||| | ||||||||||||| ||||||||||||||||||
Sbjct 31 ACCTAACTTCCTTCCCAAGAAACCTAGCAAACCTTAAAGAGTAAAGAGAGAAAATGAAGT 90
Query 77 CCGGTCAGGCTGAAATCGTGGAAACGAGCAAAGGTATCCAGAAGAGCGGTCTGATGAGCA 136
||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||
Sbjct 91 CCGGTCAGGCTGAAATCATGGAAACAAGCAAAGGTATCCAAAAGAGCGGTCTGATGAGCA 150
Query 137 GAAGGATTGCGATTCTTGAGTTCATTCTCAGGATTGTTGCATTCTTCAACACTATAGGTA 196
||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 151 GAAGGATCGCGATTCTTGAGTTTATCCTCAGGATTGTTGCATTCTTCAACACTATAGGTA 210
Query 197 GTGCAATCCTCATGGGAACCACACATGAAACTCTGCCTTTCTTTACTCAATTTATACGGT 256
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 211 GTGCAATCCTCATGGGAACCACACACGAAACTCTGCCTTTCTTTACTCAATTCATACGGT 270
Query 257 TCCAAGCCGAATACAACGATCTTCCAGCCTTAACGTATGTCATTTTTGTGGTTGCAAATG 316
||||||| ||||||||||| |||||||||||||| || |||| |||||||||||||
Sbjct 271 TCCAAGCAGAATACAACGACCTTCCAGCCTTAAC----GT--TTTTCGTGGTTGCAAATG 324
Query 317 CTGTTGTGAGTGGCTACCTTATAATGTCTCTAACTTTGGCCTTTGTACACATCGTCAAGA 376
||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 325 CTGTTGTGAGTGGTTACCTCATCTTGTCTCTAACTTTGGCCTTTGTACACATCGTCAAGA 384
Query 377 GAAAGACTCAGAACACTAGAATTCTTCTTATCGTCCTTGATGTGGCAATGTTGGGTCTTC 436
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 385 GAAAGACTCAGAACACTAGAATTCTTCTTATCATCCTTGATGTGGCAATGTTGGGTCTTC 444
Query 437 TAAGTGCTGGAGCGTCCTCAGCAGCAGCCATTGTCTACTTGGCACACAATGGGAACAATA 496
||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TAACTTCTGGAGCATCCTCAGCAGCAGCCATTGTCTACTTGGCACACAATGGGAACAATA 504
Query 497 AAACAAACTGGTTTGCTATTTGTCAACAGTTCAACTCCTTCTGTGAGCGTATCTCCGGTT 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 AAACAAACTGGTTTGCTATTTGTCAACAGTTCAACTCCTTCTGTGAGCGTATCTCCGGTT 564
Query 557 CTTTGATTGGATCTTTCATTGCCGTTGTCCTCCTCATTCTTCTCATTCTCCTATCAGCCA 616
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 565 CTTTGATTGGATCTTTCATTGCCATTGTCCTCCTCATTCTTCTTATTCTCCTATCAGCCA 624
Query 617 TTGCTCTTTCCCGACGCCACTGAAGATCTGGTCTTAGCCTGAAATATGAGTTTTCTTTTC 676
|||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 625 TTGCTCTTTCTCGACGCCATTGAAGATCTGGTGTTAGCCTGAAATATGAGTTTTCTTTTC 684
Query 677 CACTGCTTTAAGAAATACATGATTTGGTGTGTAAAAATGTTAACTTGAGCTTTTCTCTGC 736
|||||||||||||||| |||| ||||||||||||||||||| |||| ||||||||| | |
Sbjct 685 CACTGCTTTAAGAAATGCATGGTTTGGTGTGTAAAAATGTTCACTTAAGCTTTTCTTTTC 744
Query 737 ATTTGTGGTTTTTCTTTTCTCATCTCCATTGATATTTTGTGTGTGAT 783
||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 745 ATTTGTGCTTTTTCTTTTCTCATCTCCATTGATATTTTGTGTGTGAT 791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38077483426
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5