BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488379
Length=1310
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15310.1 | Symbols: ATMYB16, ATMIXTA, MYB16 | myb domain pro... 2058 0.0
AT3G01140.1 | Symbols: MYB106, NOK, AtMYB106 | myb domain prote... 556 1e-157
AT3G01142.1 | Symbols: | other RNA | chr3:46718-48296 FORWARD ... 278 1e-73
AT3G47600.1 | Symbols: MYB94, ATMYBCP70, ATMYB94 | myb domain p... 128 1e-28
AT3G28910.1 | Symbols: ATMYB30, MYB30 | myb domain protein 30 |... 121 2e-26
AT3G24310.1 | Symbols: MYB305, ATMYB71 | myb domain protein 305... 93.5 5e-18
> AT5G15310.1 | Symbols: ATMYB16, ATMIXTA, MYB16 | myb domain protein
16 | chr5:4974671-4976227 FORWARD LENGTH=1325
Length=1325
Score = 2058 bits (1114), Expect = 0.0
Identities = 1258/1323 (95%), Gaps = 27/1323 (2%)
Strand=Plus/Plus
Query 1 AAAAGGGATTCATTTGTTGTGTGTGTCTTTCTCTCTCTTCTATATATCAACCTTCTTCAC 60
|||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 1 AAAAGGGATTCATTTGTTGTGTGTGTCTTTCTCTTTCCTCTATATATCATCCTTCTTCAC 60
Query 61 TGAGATATGCTTCACTTGTAACATTTCCACAACTGTAGCC-AACTTTTGT-TCTCTGATA 118
|||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||
Sbjct 61 TGAGATATGCTTCACTTGTAACATTTCCACAACTGTAGCCAAACTTTTGTGT-TCTGATA 119
Query 119 GTGATGATCATGATCATGatat-atatata-tataAGATATCTCTTACCTTCTTCC-TCT 175
||||||||||||||||| | || | ||| | || |||||||||||||||||| ||| |||
Sbjct 120 GTGATGATCATGATCATCACATGA-ATA-AGTAGAAGATATCTCTTACCTTC-TCCTTCT 176
Query 176 TCTAATAAGAACAGAGTTTTGGTTCTTCA--TCTTTGTTCTTTACAAA-AATGGGTAGAT 232
|||||||||| |||||||||||||||| | |||||| || | | ||| |||||||||||
Sbjct 177 TCTAATAAGATCAGAGTTTTGGTTCTT-ATTTCTTTGCTC-TCA-AAACAATGGGTAGAT 233
Query 233 CACCGTGCTGTGACAAATTGGGTTTGAAGAAAGGACCTTGGACACCAGAAGAGGATCAGA 292
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 234 CACCGTGTTGTGACAAATTGGGTTTGAAGAAAGGACCTTGGACACCAGAGGAGGATCAGA 293
Query 293 AACTTTTAGCTTATATTGAAGAGCATGGTCATGGAAGTTGGCGTTCATTGCCTGAGAAAG 352
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 294 AACTTTTAGCTTATATTGAAGAACATGGTCATGGAAGTTGGCGTTCATTGCCTGAGAAAG 353
Query 353 CTGGTCTTCATCGATGCGGGAAA-AGTTGCAGACTAAGATGGACTAACTACCTAAGACCT 411
||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 354 CTGGTCTCCATCGATGC-GGAAAGAGTTGTAGACTAAGATGGACTAACTACCTAAGACCT 412
Query 412 GACATCAAAAGAGGCAAATTCAACTTGCAAGAAGAACAAACTATTATCCAACTCCATGCT 471
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 413 GACATCAAAAGAGGCAAATTCAACTTACAAGAAGAACAAACCATTATCCAACTCCATGCT 472
Query 472 CTGTTAGGAAACAGATGGTCAGCGATTGCTACTCATTTGCCTAAGAGAACAGACAACGAA 531
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 473 CTGTTAGGAAACAGATGGTCAGCGATTGCTACTCATTTGCCAAAGAGAACAGACAACGAG 532
Query 532 ATCAAGAACTATTGGAACACTCATTTGAAGAAACGGTTAGTGAAAATGGGGATTGATCCA 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 ATCAAGAACTATTGGAACACTCATTTGAAGAAACGGTTAGTGAAAATGGGGATTGATCCA 592
Query 592 GTGACTCATAAACCCAAAAACGAGACTCCTTTATCTTCTCTTGGTCTATCCAAGAACGCA 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GTGACTCATAAACCCAAAAACGAGACTCCTTTATCTTCTCTTGGTCTATCCAAGAACGCA 652
Query 652 GCTATACTTAGCCACACTGCTCAATGGGAAAGTGCAAGGCTTGAAGCTGAAGCAAGGCTA 711
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 653 GCTATACTTAGCCACACTGCTCAATGGGAAAGTGCAAGGCTTGAAGCTGAAGCAAGACTA 712
Query 712 GCTAGAGAATCAAAGCTTCTTCATTTACAACATTACCAAACCAAAAcatcatctca---t 768
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 713 GCTAGAGAATCAAAGCTTCTTCATTTACAACATTACCAAACCAAAACATCATCTCAACCT 772
Query 769 catcatcatcatGGATTCACTCACAAGTCATTGCTACCCAATTGGACAACAAAACCAAAC 828
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||
Sbjct 773 CATCATCATCATGGATTCACTCACAAGTCATTGTTACCTAATTGGACAACAAAACCACAC 832
Query 829 GAAGATCAACAACAACTTGAATCTCCGACATCTACAGTGTCATTCTCTGAGATGAAGGAA 888
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 GAAGATCAACAACAGCTTGAATCTCCGACATCTACAGTGTCATTCTCTGAGATGAAGGAA 892
Query 889 TCAATCCCAGCGAAGATAGAGTTTGTCGGATCATCAACTGGTCTAAGTCTGATGAAAGAA 948
|||||||| ||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 893 TCAATCCCGGCGAAGATAGAGTTTGTCGGATCATCAACTGGTGTGACTCTGATGAAAGAA 952
Query 949 CCTGATCAAAACGATTGGATCAACTCAACGATGCACGAGTTTGAAACTACGCAGATGGGG 1008
||||| || |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 953 CCTGAACA---CGATTGGATCAATTCAACGATGCACGAGTTTGAAACTACGCAGATGGGA 1009
Query 1009 GAAGGAATCGAAGAAGGCTTCACGGGTCTCTTGCTCGGTGGTGATTCGATCGACCGGAGT 1068
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1010 GAAGGAATCGAAGAAGGGTTCACGGGTCTCTTGCTCGGTGGTGATTCAATCGACCGGAGT 1069
Query 1069 TTCTCCGGAGAGAAAAACGAGACGGCAGGCGAGAGTAGTGGTGGTGACTGCAACTACTAT 1128
|||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1070 TTCTCCGGCGATAAAAACGAGACGGCCGGCGAGAGTAGTGGTGGTGACTGCAACTACTAT 1129
Query 1129 GAGGACAACAAGAACTACTTGGACAGCATTTTTAACTTTGTGGATCCTTCACCGTCGGTT 1188
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1130 GAGGACAACAAGAACTACTTGGACAGCATTTTTAACTTTGTAGATCCTTCACCGTCGGAT 1189
Query 1189 TCACCACCGATGTTCTGAATC-AAGGGTTGATATTTGTTGGGAATGtttttgattctttt 1247
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1190 TCACC---GATGTTCTGAATCTAAGGGTTGATATTTGTTGGGAATGTTTTTGATTCTTTT 1246
Query 1248 ttagtttctagtttttGTGCTTAAACTCTGATTAGACAATTTTTAGACTAATCCAATTTT 1307
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1247 TTAGTTTCTAGTTTTTGTGCTTAAACTCTGATTAGACAATTTTTAAACTAATCCAATTTT 1306
Query 1308 TGC 1310
|||
Sbjct 1307 TGC 1309
> AT3G01140.1 | Symbols: MYB106, NOK, AtMYB106 | myb domain protein
106 | chr3:46396-48296 REVERSE LENGTH=1543
Length=1543
Score = 556 bits (301), Expect = 1e-157
Identities = 543/654 (83%), Gaps = 39/654 (6%)
Strand=Plus/Plus
Query 252 GGGTTTGAAGAAAGGACCTTGGACACCAGAAGAGGATCAGAAACTTTTAGCTTATATTGA 311
||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 313 GGG-TTGAAGAAAGGGCCTTGGACTCCAGAAGAGGATCAGAAACTTTTGGCTTATATTGA 371
Query 312 AGAGCATGGTCATGGAAGTTGGCGTTCATTGCCTGAGAAAGCTGGTCTTCATCGATGCGG 371
||| ||||| |||||||| |||||||| |||||||||||||| ||||| || | || |
Sbjct 372 AGAACATGGCCATGGAAGCTGGCGTTCTTTGCCTGAGAAAGCCGGTCTCCAAAGGTG-TG 430
Query 372 GAAA-AGTTGCAGACTAAGATGGACTAACTACCTAAGACCTGACATCAAAAGAGGCAAAT 430
|||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 431 GAAAGAGTTGCAGACTCAGATGGACTAACTACCTAAGACCTGACATCAAGAGAGGCAAAT 490
Query 431 TCAACT-TGCAAGAAGAACAAACTATTATCCAACTCCATGCTCTGTTAGGAAACAGATGG 489
|| ||| | |||||||||||||| || || |||||||| ||||| | |||||||| |||
Sbjct 491 TC-ACTGTACAAGAAGAACAAACCATCATTCAACTCCACGCTCTCCTCGGAAACAGGTGG 549
Query 490 TCAGCGATTGCTACTCATTTGCCTAAGAGAACAGACAACGAAATCAAGAACTATTGGAAC 549
||||||||||| |||||||| || ||||| ||||||||||| ||||||||||| ||||||
Sbjct 550 TCAGCGATTGCAACTCATTTACCAAAGAGGACAGACAACGAGATCAAGAACTACTGGAAC 609
Query 550 ACTCATTTGAAGAAACGGT-TAG-TGAAAATGGGGATTGATCCAGTGACTCATAAACCCA 607
|| || |||||||||| || | | | ||||||||||| |||||||||||||| || | ||
Sbjct 610 ACACACTTGAAGAAAC-GTCT-GATCAAAATGGGGATAGATCCAGTGACTCACAAGCACA 667
Query 608 AAAACGAGACTCCTTT-ATCTT-CTCTTGGTCTATCCAAGAACGCAGCTATACTTAGCCA 665
||||||||||| |||| |||| | | || | ||| ||||||||||| | ||||| ||
Sbjct 668 AAAACGAGACT-CTTTCGTCTTCCAC-AGGACAATCAAAGAACGCAGCCACGCTTAGTCA 725
Query 666 CACT-GCTCAATGGGAAAGTGCAAGGCTTGAAGCTGAAGCAAGGCTAGCTAGAGAATCAA 724
| | ||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 726 TA-TGGCTCAATGGGAGAGTGCAAGACTCGAAGCTGAAGCAAGGCTAGCTAGAGAATCAA 784
Query 725 AGCTTCTTCATTTACAACATTACCAAACCAA-AAca---t---ca--tct-ca--tcatc 772
||||||| |||||||| |||||||||| ||| |||| | || || || || ||
Sbjct 785 AGCTTCTCCATTTACAGCATTACCAAAACAATAACAACCTTAACAAATCAGCAGCTCCTC 844
Query 773 atcatcatGGATTCACTCACAAGTCATTGCTACCCAATTGGAC-AA-CAAAACCAAACGA 830
| || ||| | |||||||| || ||| | || || ||||| || | ||||||| ||
Sbjct 845 AACAACATTGCTTCACTCAAAAAACAT--CAACA-AACTGGACTAAACCAAACCAAG-GA 900
Query 831 AGATC--A-AC-AACAACTTGAATCTCCGACATCTACAGTGTCATTCTCTGAGA 880
| | | | || |||| ||||||||||||||||| || ||| ||||||||||||
Sbjct 901 A-A-CGGAGACCAACAGCTTGAATCTCCGACATCGACGGTGACATTCTCTGAGA 952
> AT3G01142.1 | Symbols: | other RNA | chr3:46718-48296 FORWARD
LENGTH=1579
Length=1579
Score = 278 bits (150), Expect = 1e-73
Identities = 238/279 (85%), Gaps = 11/279 (4%)
Strand=Plus/Minus
Query 487 TGGTCAGCGATTGCTACTCATTTGCCTAAGAGAACAGACAACGAAATCAAGAACTATTGG 546
|||||||||||||| |||||||| || ||||| ||||||||||| ||||||||||| |||
Sbjct 752 TGGTCAGCGATTGCAACTCATTTACCAAAGAGGACAGACAACGAGATCAAGAACTACTGG 693
Query 547 AACACTCATTTGAAGAAACGGT-TAG-TGAAAATGGGGATTGATCCAGTGACTCATAAAC 604
||||| || |||||||||| || | | | ||||||||||| |||||||||||||| || |
Sbjct 692 AACACACACTTGAAGAAAC-GTCT-GATCAAAATGGGGATAGATCCAGTGACTCACAAGC 635
Query 605 CCAAAAACGAGACTCCTTT-ATCTT-CTCTTGGTCTATCCAAGAACGCAGCTATACTTAG 662
||||||||||||| |||| |||| | | || | ||| ||||||||||| | |||||
Sbjct 634 ACAAAAACGAGACT-CTTTCGTCTTCCAC-AGGACAATCAAAGAACGCAGCCACGCTTAG 577
Query 663 CCACACT-GCTCAATGGGAAAGTGCAAGGCTTGAAGCTGAAGCAAGGCTAGCTAGAGAAT 721
|| | | ||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 576 TCATA-TGGCTCAATGGGAGAGTGCAAGACTCGAAGCTGAAGCAAGGCTAGCTAGAGAAT 518
Query 722 CAAAGCTTCTTCATTTACAACATTACCAAACCAA-AAca 759
|||||||||| |||||||| |||||||||| ||| ||||
Sbjct 517 CAAAGCTTCTCCATTTACAGCATTACCAAAACAATAACA 479
Score = 141 bits (76), Expect = 2e-32
Identities = 104/117 (89%), Gaps = 3/117 (3%)
Strand=Plus/Minus
Query 371 GGAAA-AGTTGCAGACTAAGATGGACTAACTACCTAAGACCTGACATCAAAAGAGGCAAA 429
||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 957 GGAAAGAGTTGCAGACTCAGATGGACTAACTACCTAAGACCTGACATCAAGAGAGGCAAA 898
Query 430 TTCAACT-TGCAAGAAGAACAAACTATTATCCAACTCCATGCTCTGTTAGGAAACAG 485
|||| || | |||||||||||||| || || |||||||| ||||| | ||||||||
Sbjct 897 TTCA-CTGTACAAGAAGAACAAACCATCATTCAACTCCACGCTCTCCTCGGAAACAG 842
> AT3G47600.1 | Symbols: MYB94, ATMYBCP70, ATMYB94 | myb domain
protein 94 | chr3:17539338-17541230 REVERSE LENGTH=1486
Length=1486
Score = 128 bits (69), Expect = 1e-28
Identities = 264/355 (74%), Gaps = 26/355 (7%)
Strand=Plus/Plus
Query 223 ATGGGTAGATCACCGTGCTGTGACAA-ATTGGGTTTGAAGAAAGGACCTTGGACACCAGA 281
||||| ||| |||| ||||||||||| ||| || ||||||||||||| |||||||||||
Sbjct 196 ATGGGAAGACCACCATGCTGTGACAAGATT-GGAGTGAAGAAAGGACCATGGACACCAGA 254
Query 282 AGAGGATCAGAAACTT--TTAGCTTATATTGAAGAGCATGGTCATGGAAGTTGGCGTTCA 339
|| ||| | | ||| || |||| || |||| ||||||| ||||| ||| | ||
Sbjct 255 GGAAGAT-ATCATCTTGGTT-TCTTACATCCAAGAACATGGTCCTGGAAACTGGAGATC- 311
Query 340 T-TGCCTGA--GAAAGCTGGTCTTCA-TCGATGCGGGAAAAGTTGCAGACTAAGATGGAC 395
| ||||| | | | | ||| || | |||| | ||||| || ||| | || |||||
Sbjct 312 TGTGCCT-ACTCACA-CAGGT-TTGAGGAGATGTAGCAAAAGCTGTAGATTGAGGTGGAC 368
Query 396 TAACTACCTAAGACCTGACATCAAAAGAGGCAAA-TTCAACTTGCAAGAAGAACAA-ACT 453
||| || || |||||| ||||| | || ||| |||| | ||| |||| | || | |
Sbjct 369 TAATTATCTTCGACCTGGGATCAAGCGTGG-AAATTTCACCGAGCATGAAG-AGAAGA-T 425
Query 454 -ATTATCCAACTCCATGCTCTGTTAGGAAACAGATGGTCAGCGATTGCTACTCAT-T-TG 510
||| |||| || || ||||| || |||||||| ||| |||| || || | |||| | |
Sbjct 426 GATTCTCCATCTTCAAGCTCTTTTGGGAAACAGGTGGGCAGCTATAGC-A-TCATATCTT 483
Query 511 CCTA-AGAGAACAGACAACGAAATCAAGAACTATTGGAACACTCATTTGAAGAAA 564
|| | | || |||||||| || || ||||||||||||||||||||||||||||||
Sbjct 484 CC-AGAAAGGACAGACAATGATATAAAGAACTATTGGAACACTCATTTGAAGAAA 537
> AT3G28910.1 | Symbols: ATMYB30, MYB30 | myb domain protein 30
| chr3:10911157-10913190 FORWARD LENGTH=1592
Length=1592
Score = 121 bits (65), Expect = 2e-26
Identities = 253/339 (75%), Gaps = 32/339 (9%)
Strand=Plus/Plus
Query 241 TGTGACAAATTG-GGTTTGAAGAAAGGACCTTGGACACCAGAAGAGGATCAGAAACTTTT 299
||||||||| | || |||||||||| || ||||| || ||||| ||| | | ||||
Sbjct 305 TGTGACAAA-GGAGGAGTGAAGAAAGGGCCATGGACTCCTGAAGAAGAT-A-TCA-TTTT 360
Query 300 AG---CTTATATTGAAGAGCATGGTCATGG-AAGTTGGCGTTCAT-TGCCTGA-GAA-AG 352
|| |||| || |||| ||||||| ||| || |||| | | | | ||| | || |
Sbjct 361 AGTCACTTACATCCAAGAACATGGTCCTGGTAA-TTGGAGAGC-TGTTCCT-ACCAATA- 416
Query 353 CTGGTCTTCATCGATGCGGGAAAAGTTGCAGACTAAGATGGACTAACTACCTAAGACC-T 411
|||| || | | ||||| | || ||||| ||||| |||||||| ||||| |||| ||
Sbjct 417 CTGGGCTGCTTAGATGCAGCAAGAGTTGTAGACTTAGATGGACAAACTATTTAAGGCCAG 476
Query 412 GACATCAAAAGAGGCAAATTCAACTTG--CAAGAAGAACAA-ACT-ATTATCCAACTCCA 467
|| |||||||||||||| ||| || | || |||||| || | | ||| | || |||||
Sbjct 477 GA-ATCAAAAGAGGCAATTTC-AC-AGAACATGAAGAA-AAGA-TGATTGTTCATCTCCA 531
Query 468 TGCTCTGTTAGGAAACAGATGGTCAGCGATTGCTACTCAT-T-TGCCTA-AGAGAACAGA 524
|| || |||||||| |||||| | || ||||| |||| | | || | | || |||||
Sbjct 532 AGCCCTCTTAGGAAATAGATGGGCTGCAATTGC--GTCATATCTTCC-ACAAAGGACAGA 588
Query 525 CAACGAAATCAAGAACTATTGGAACACTCATTTGAAGAA 563
||| || || |||||||||||||||||||||||||||||
Sbjct 589 CAATGACATTAAGAACTATTGGAACACTCATTTGAAGAA 627
> AT3G24310.1 | Symbols: MYB305, ATMYB71 | myb domain protein 305
| chr3:8811131-8812364 REVERSE LENGTH=1049
Length=1049
Score = 93.5 bits (50), Expect = 5e-18
Identities = 156/204 (76%), Gaps = 20/204 (10%)
Strand=Plus/Plus
Query 370 GGGAAAAGTTGCAGACTAAGATGGACTAACTACCTAAGACCTGACATCAAAAGAGG-CAA 428
|||||||| ||||| |||||||| ||||||||||||||| ||| |||| ||||| |||
Sbjct 200 GGGAAAAGCTGCAGGTTAAGATGGGTTAACTACCTAAGACCAGACCTCAAGAGAGGACAA 259
Query 429 ATTCAACTTGCAAGAAGAACAAACTATTATCC---AACTCCATGCTCTGTTAGGAAACAG 485
| || || | | | ||| |||| ||||||| | | |||||| || || || ||
Sbjct 260 A-TC-AC-T-CCTCATGAAGAAACCATTATCCTTGAGTTACATGCTAAGTGGGGCAATAG 315
Query 486 ATGGT-CAGCGATTGCTAC-TCA-TTTGCCTAAG-AGAACAGACAACGAAATCAAGAACT 541
|||| || ||||||| || | | ||| || | |||||||||||||||||||||||||
Sbjct 316 GTGGTCCA-CGATTGC-ACGT-AGTTTACC-GGGAAGAACAGACAACGAAATCAAGAACT 371
Query 542 ATTGG--AACACTCATTTGAAGAA 563
||||| ||| | ||||| |||||
Sbjct 372 ATTGGCGAAC-C-CATTTCAAGAA 393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64457499780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5