BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488382
Length=1217
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15330.1 | Symbols: ATSPX4, SPX4 | SPX domain gene 4 | chr5:... 1650 0.0
> AT5G15330.1 | Symbols: ATSPX4, SPX4 | SPX domain gene 4 | chr5:4980488-4982231
FORWARD LENGTH=1252
Length=1252
Score = 1650 bits (893), Expect = 0.0
Identities = 1141/1251 (91%), Gaps = 55/1251 (4%)
Strand=Plus/Plus
Query 1 CTCTCGCGTTCGTTCTTATCCAGGCCAGCTCTGCTTCACCGTCGCAATCTCCGTCTTCTC 60
|||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||
Sbjct 23 CTCTCGCGTTCGTTCTTATCCA--CGAGCTCTG---CACCGTCGCAATCTCCGTCTTCTC 77
Query 61 CA-TTAGATCCAACACAGAGGCTCTTCTACATGAAATTCGGCAAAGAGTTTCGTACTCAC 119
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 78 CATTTAGATCCAACACAGAGCCTTTTCTACATGAAATTCGGCAAAGAGTTTCGTACTCAC 137
Query 120 CTCGAAGAAACTTTACCTGAGTGGAGAGACAAGTTCCTTTGCTATAAACCTTTGAAAAAG 179
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 138 CTCGAAGAAACTTTACCAGAGTGGAGAGACAAGTTCCTTTGCTATAAACCTTTAAAAAAG 197
Query 180 CTTCTCAAATATTATCC---TTACT----C----TT----CCG---A-T-C-A-C-C-TC 215
||||||||||||||||| ||||| | || ||| | | | | | | |
Sbjct 198 CTTCTCAAATATTATCCTTATTACTCCGCCGATTTTGGACCCGCCAATTCCGATCACAAC 257
Query 216 GATTTGCGTCCCGTATTCGCTGACACCACTAACATCTCCTCCGCCGCAGACGACGGCGAT 275
|||| |||||| ||||| ||||| || ||||||||||| |||||||| |||||||||| |
Sbjct 258 GATTCGCGTCCAGTATTTGCTGATACTACTAACATCTCTTCCGCCGCCGACGACGGCGGT 317
Query 276 GTGGCTCCCGGCGTTAGGCCTA-CGGAAGATCTCCAGGGTTCGTTTGTGAGGATACTTAA 334
|||| ||||||||| ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 318 GTGGTTCCCGGCGTCAGGCC-ATCGGAAGATCTCCAGGGTTCGTTTGTGAGGATACTTAA 376
Query 335 CGAGGAACTTGACAAGTTTAATGACTTTTACGTTGATAAAGAAGAAGATTTCGTTATCAG 394
||| |||||||| |||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 377 CGATGAACTTGAGAAGTTTAACGATTTTTACGTTGATAAGGAAGAAGATTTCGTTATCAG 436
Query 395 ATTACAGGAGCTTAAGGAACGAATCGAGCAAGTTAAAGAGAAGAACGGAAAGAATGGGGA 454
|||||||||||| |||||| |||||||||||||| | ||| | ||||||||||||
Sbjct 437 ATTACAGGAGCTCAAGGAAAGAATCGAGCAAGTT----A-AAG-A---AAAGAATGGGGA 487
Query 455 CTTCGCATCAGAAAGCGAGTTCAGCGAAGAAATGATGGATATTCGCAGAGACCTTGTTAC 514
|| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 488 ATTTGCATCAGAAAGTGAGTTCAGCGAAGAAATGATGGATATTCGGAGAGACCTTGTTAC 547
Query 515 CATTCATGGCGAGATGGTGCTCCTGAAAAACTACAGCTCCCTTAATTTTGCAGGACTTGT 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 CATTCATGGCGAGATGGTGCTCCTGAAAAACTACAGCTCCCTTAATTTTGCAGGACTTGT 607
Query 575 CAAGATTTTGAAGAAGTACGATAAAAGAACAGGTGGACTTCTACGTCTGCCTTTCACACA 634
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 608 CAAGATTTTGAAGAAGTACGATAAAAGAACAGGTGGACTTTTACGTTTGCCTTTCACACA 667
Query 635 GCTTGTTCTCCATCAACCTTTCTTTACAACAGAGCCCCTTACTAAGTTAGTCCGTGATTG 694
|||||||||||||||||| |||||||| |||||||| ||||||| |||||||||||| ||
Sbjct 668 GCTTGTTCTCCATCAACCCTTCTTTACTACAGAGCCACTTACTAGGTTAGTCCGTGAATG 727
Query 695 TGAGGCCAATCTTGAGCTTCTCTTTCCTACAGAAGCAGAAGTTGTAGAGTCTTCCAGCAC 754
||||||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||| |
Sbjct 728 TGAGGCCAATCTTGAGCTTCTTTTTCCTTCAGAAGCGGAAGTTGTAGAGTCTTCTAGCGC 787
Query 755 AGTGCACCCACACTCAAGCTCACATCATCACAACTCCCCAAGAATCTCAGCCGAGACTTC 814
|||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 788 AGTGCAAGCACACTCAAGCTCACATCAGCACAACTCCCCAAGAATCTCAGCTGAGACTTC 847
Query 815 CTCAACTCTCGGCAATGAAAATCTTGATATATATAAGAGTACACTCGCTGCAATGAGAGC 874
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 CTCAACTCTCGGCAATGAAAATCTTGATATATATAAGAGTACACTCGCTGCAATGAGAGC 907
Query 875 TATAAGAGGGTTACAAAAGGCTAGCTCGACATACAACCCATTATCATTCTCATCGCTTCT 934
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 908 TATAAGAGGGTTACAAAAGGCTAGCTCGACGTACAACCCTTTATCATTCTCATCGCTTCT 967
Query 935 TCAGAACGAGGATGATGAGACAGTAACAGCTGAAAACTCTCCAAACTCTGAGAACAAAGA 994
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 968 TCAGAACGAGGATGATGAGACGGTAACAGCTGAAAACTCTCCAAACTCTGGGAACAAAGA 1027
Query 995 TGATTCAGAGAAGGAAGATACTGGACCTTCCCACTGATCAGAAGAGAATGAATGATGCTC 1054
||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 1028 TGATTCAGAGAAGGAAGATACTGGACCTTCCCACTGATCAGAAGAGAATGA-TGCT-CT- 1084
Query 1055 CTTTTGATCAAGATTTTGAGATTTTGCTTCTTGATATCACCCTAACTTTTCATATA-TTA 1113
|||||||||||||||||||| ||||||||||||| |||||||||||||||||| | |||
Sbjct 1085 -TTTTGATCAAGATTTTGAGAATTTGCTTCTTGATTTCACCCTAACTTTTCATAAAATTA 1143
Query 1114 ACACATTTTACT---C--CTTCACCTTTTGCAG-AGCACAGCTTCTGTATGCATTTGAAT 1167
|||||||||||| | ||||||||||||||| | |||| |||||||||||||||||||
Sbjct 1144 ACACATTTTACTTTACTTCTTCACCTTTTGCAGGA-CACAACTTCTGTATGCATTTGAAT 1202
Query 1168 TGTAGTATAGTCGTTCATAGATTTTCAATGAAAATTTTC-TCCATGGTCTC 1217
||||||| ||||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct 1203 TGTAGTACAGTCGTTTATAGATTTTCAATGAAA-TTTTCCTCCATTGTCTC 1252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59788849095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5