BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488385
Length=1254
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15390.1 | Symbols: | tRNA/rRNA methyltransferase (SpoU) fa... 1823 0.0
> AT5G15390.1 | Symbols: | tRNA/rRNA methyltransferase (SpoU)
family protein | chr5:4995145-4997403 FORWARD LENGTH=1389
Length=1389
Score = 1823 bits (987), Expect = 0.0
Identities = 1185/1275 (93%), Gaps = 35/1275 (3%)
Strand=Plus/Plus
Query 1 GTTCGAGACGACGACAAGAGACAAG--C-G---GTGGTCGTGAAATCGAAACCAGAGCCT 54
||||||||||||||||||||||||| | | ||||||| |||||||||||||||||||
Sbjct 3 GTTCGAGACGACGACAAGAGACAAGCTCTGTCTGTGGTCGGGAAATCGAAACCAGAGCCT 62
Query 55 TGGAGTGTGTCTCTGCTCTGT-GATTCACTTGTCCATTTTCGATCT-TTGAAGCTGAATC 112
|||| |||||||||||||||| || | | |||||||||||| | |||||| ||||||
Sbjct 63 TGGACTGTGTCTCTGCTCTGTGGAGT-A----TCCATTTTCGATTTCTTGAAGGTGAATC 117
Query 113 TAGCGATTCCTCT-ATCTCAAGCTCCGACACTACTGTGCAATAAAC---AC---AG-TAG 164
||||| |||| | ||||||||||||| | |||||||||||||| || || |||
Sbjct 118 CAGCGAATCCT-TAATCTCAAGCTCCG--A-GACTGTGCAATAAACAAAACAGTAGCTAG 173
Query 165 CAGCAGCAGCAACACATGAACTCGTGCAAATCCATTATCCGTGCCTCAATCTCTTCATTT 224
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 174 CAGCAGCAGCAACACATGAACTCGTGCAAATCCCTTATCCGTGCCTCAATCTCTTCCTTT 233
Query 225 CCATTCGTTCCTCTTCCAAACCCTAATTCCTCTATCACCTTTATCATCCCAGTTCGCG-C 283
||||| |||||||||||||||||||||| |||||||||||| ||| | || ||||||| |
Sbjct 234 CCATTTGTTCCTCTTCCAAACCCTAATTTCTCTATCACCTTCATC-T-CC-GTTCGCGCC 290
Query 284 TTTTCCTCCTCTCTCCGTCCTCCATCCAAATCCATCATGCATTGGAACAGCTCGACGCAC 343
|||| |||||||||| ||||| ||||||||| ||||||| |||| |||||||||||||||
Sbjct 291 TTTT-CTCCTCTCTCTGTCCTTCATCCAAATTCATCATGTATTGTAACAGCTCGACGCAC 349
Query 344 ATTTCATGGAGTTGCGGCTCTTTCACCGGAAAGCTTAACGGAAGATTCTCCCAAGGATAC 403
||||||||||| || ||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 350 ATTTCATGGAGCTGTGGCTCTTTCACCGGAGAGCTTAACGGAAGAGTCTCCCAAGGATAC 409
Query 404 TGT-CAAGGACTTGCTAACAACCAATCGTGGCGACGCGTCAAGCTTGATGAAGATGGAGC 462
||| ||||| ||| |||||||||||||||| || || ||||||||||||||||||||||
Sbjct 410 TGTGAAAGGA-TTGTTAACAACCAATCGTGGTGAGGCCTCAAGCTTGATGAAGATGGAGC 468
Query 463 GGAGGTGTACCTTAAGCGATGGTGAAGGTGATTGTAGAGGATCTTGGTTTCCTTACGAGG 522
||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 469 GGAGGTGTAGCTTAAGCAATGGTGAGGGTGATTGTAGAGGATCTTGGTTTCCTTACGAGG 528
Query 523 ATAGGTTCAGGTGTGGTGAAGTGTATCTTTGTAGCCGTGAGGTGTTGGAGGCGGTGACTC 582
||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||| ||
Sbjct 529 ATAGGTTCAGGTGTGGTGAGGTGCATCTTAGTAGCCGTGAGGTGTTGGAGGCGGTGAGTC 588
Query 583 CTCATATGATGGAAGAGAGGACAGATAGGTTCAGGCGTGTGGTGGAGAATCGAAGCTTCT 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 589 CTCATATGATGGAAGAGAGGACAGATAGGTTCAGGCGTGTGGTGGAGAATCGAAGCTACT 648
Query 643 CCGTGTGTCTTGTGGTTGAAGGTCTCTCTGATTTTGGAAACATTTCTGCTGCTTTCCGCT 702
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 649 CGGTGTGTCTTGTGGTTGAAGGTCTCTCTGATTTTGGAAACATCTCTGCTGCTTTCCGCT 708
Query 703 CGGCGGATGCCTTAGGGATTCAATCTGTACATGTTGTTTCCTGTGACAGCTCCAAAAGGT 762
| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 CAGCTGATGCGTTGGGGATTCAATCTGTACATGTTGTTTCCTGTGACAGCTCCAAAAGGT 768
Query 763 ATAACGGAAATCGCCATGTGAGTATGGGAGCTGAGAAATGGCTGGACATTGAGTTTTGGG 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 ATAACGGAAATCGCCATGTGAGTATGGGAGCTGAGAAATGGCTGGACATTGAGTTTTGGG 828
Query 823 ACACACCTAAAGAATGTTTCGAAGTTCTGAAGTCTCGAGGTTACAGAATTGCCACAACTC 882
|||||||||||||||||||| ||||| |||||||||| ||||||||||| || |||||||
Sbjct 829 ACACACCTAAAGAATGTTTCAAAGTTTTGAAGTCTCGCGGTTACAGAATAGCTACAACTC 888
Query 883 ATTTGGGAATGGACACGGTTTCCATTTACGATATGGACTGGTCATGCCCAACAGCAATAG 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ATTTGGGAATGGACACGGTTTCCATTTACGATATGGACTGGTCATGCCCAACAGCAATAG 948
Query 943 TTGTTGGAAACGAGGGCAGGGGAATAAGTGACGAAGCGTTGGAGTTATCAGATCTGCGTT 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 TTGTTGGAAACGAGGGCAGGGGAATAAGTGACGAAGCGTTGGAGTTATCAGATCTGCGTT 1008
Query 1003 GCAGTATTCCGATGAATGGAATGGTTGATTCGTTCAATGTCTCAGTGGCTGCAGGGATTC 1062
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1009 GCAGTATTCCGATGAATGGAATGGTTGATTCGTTTAATGTCTCAGTGGCTGCAGGGATTC 1068
Query 1063 TGATGCACCACGCAGTCTCTGACAGAACCACTCGTCTGGGAAGTCATGGAGATCTGTCGG 1122
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1069 TGATGCACCACGCAGTCTCTGATAGAACCACTCGTCTGGGAAGCCATGGAGATCTGTCGG 1128
Query 1123 AAGCAGAGAAAGAGATATTGATGGCTGAGTTCTCACTTCGTCACAGTAGAAGCTCAATTA 1182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 AAGCAGAGAAAGAGATATTGATGGCTGAGTTCTCACTTCGTCACAGTAGAAGCTCAATTT 1188
Query 1183 GCATTGCTTACGAGTTCGCTAAACGTAAACAACA-CTCT-T-CTTCCTTCTAATTTTGAA 1239
|||||||||||||||||||||||||||||||||| | || | | |||| |||||||||||
Sbjct 1189 GCATTGCTTACGAGTTCGCTAAACGTAAACAACAACACTCTACCTCCTCCTAATTTTGAA 1248
Query 1240 ACAGTTCTCTTATTC 1254
|| ||| ||||||||
Sbjct 1249 ACCGTTGTCTTATTC 1263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61646269260
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5