BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488387
Length=2356
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15410.1 | Symbols: DND1, ATCNGC2, CNGC2 | Cyclic nucleotide... 3727 0.0
> AT5G15410.1 | Symbols: DND1, ATCNGC2, CNGC2 | Cyclic nucleotide-regulated
ion channel family protein | chr5:5003307-5006882
REVERSE LENGTH=2453
Length=2453
Score = 3727 bits (2018), Expect = 0.0
Identities = 2227/2328 (96%), Gaps = 14/2328 (1%)
Strand=Plus/Plus
Query 38 CTCT-CCAATCACTCCCTGCAAA--ATCTTCTCTCCCTCTCCCATGGTGGTTCCTCTGTT 94
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 54 CTCTCCCAATCACTCCCTGCAAATTTTCTTCTCTCCCTCTCCCATGGTGGTTCCTCTATT 113
Query 95 TCAATCATGCCCTCTCACCCCAACTTCATCTTCAGGTGGATTGGAATGTTTTCCGAGAAA 154
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 114 TCAATCATGCCCTCTCACCCCAACTTCATCTTCAGGTGGATTGGACTGTTTTCCGATAAG 173
Query 155 TTCCGTCGACAAACGACTGGAATCGATGAAAACAGTATTCTCCAAATCAACGGTGGAGAT 214
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 174 TTCCGTCGACAAACGACTGGGATCGATGAAAACAGTAACCTCCAAATCAACGGTGGAGAT 233
Query 215 TCGAGCAGCAGCGGCAGCGATGAGACGCCGGTGCTAAGTTCCGTCGAGTGTTACGCCTGC 274
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 234 TCGAGCAGCAGCGGCAGCGATGAGACGCCGGTGCTAAGCTCCGTCGAGTGTTACGCTTGC 293
Query 275 ACACAAGTAGGCGTCCCAGCTTTCCATTCAACTAGCTGCGATCAAGCTCACGCGCCGGAG 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 ACACAAGTAGGCGTCCCAGCTTTCCATTCAACTAGCTGCGATCAAGCTCACGCGCCGGAG 353
Query 335 TGGCGTGCCTCCGCCGGCTCTTCCT-TAGTTCCGATCCAGGAAGGATCCGTCCCTAACCC 393
|||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||
Sbjct 354 TGGCGTGCCTCCGCCGGCTCTT-CTCTAGTTCCGATCCAGGAAGGATCTGTCCCTAACCC 412
Query 394 AGCCCGAACCCGATTCCGACGTCTCAAAGGTCCGTTCGGTGAAGTTCTCGATCCCAGGAG 453
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 413 AGCCCGAACCAGATTCCGACGTCTCAAAGGTCCGTTTGGTGAAGTTCTCGATCCTAGGAG 472
Query 454 CAAGCGCGTGCAGAGATGGAACCGCGCGTTGCTTCTAGCTCGCGGGATGGCTTTAGCTGT 513
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||
Sbjct 473 CAAGCGCGTGCAGAGATGGAACCGCGCGTTGCTTTTAGCTCGTGGGATGGCTTTAGCGGT 532
Query 514 GGATCCGCTCTTCTTCTACGCGCTTTCCATCGGCCGAACCACCGGACCGGCGTGTCTTTA 573
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 533 GGATCCGCTCTTCTTCTACGCGCTTTCCATCGGCCGAACTACCGGACCGGCGTGTCTTTA 592
Query 574 CATGGACGGTGCCTTCGCCGCGGTGGTAACGGTGCTCCGCACGTGTCTCGACGCTGTTCA 633
|||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 593 CATGGATGGTGCGTTCGCCGCGGTGGTCACGGTGCTCCGCACGTGTCTCGATGCTGTTCA 652
Query 634 TCTTTGGCACGTGTGGCTTCAATTCAGATTGGCTTACGTCTCGAGAGAGTCGCTTGTCGT 693
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 653 TCTTTGGCACGTGTGGCTTCAATTCAGACTGGCCTACGTCTCGAGAGAGTCGCTTGTCGT 712
Query 694 TGGTTGTGGCAAGCTCGTTTGGGATCCACGCGCCATCGCGTCTCACTACGCACGCTCTCT 753
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TGGTTGTGGGAAGCTCGTTTGGGATCCACGCGCCATCGCGTCTCACTACGCACGCTCTCT 772
Query 754 CACTGGCTTCTGGTTTGATGTTATCGTCATCCTCCCTGTTCCTCAGGCGGTGTTTTGGTT 813
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 773 CACTGGCTTCTGGTTTGATGTTATCGTCATCCTCCCTGTCCCTCAGGCAGTGTTTTGGTT 832
Query 814 AGTTGTGCCGAAACTGATAAGAGAAGAGAAGATTAAGCTGATAATGACGATTCTTG-TGC 872
||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||
Sbjct 833 AGTTGTGCCGAAACTGATAAGAGAAGAGAAGGTTAAGCTGATAATGACGATTC-TGCTGC 891
Query 873 TAATATTCTTGTTCCAGTTCCTCCCCAAGATTTATCACTGCATCTGCTTGATGAGAAGGA 932
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 892 TAATATTCTTGTTCCAGTTCCTCCCCAAGATTTATCACTGCATCTGTTTGATGAGAAGGA 951
Query 933 TGCAAAAGGTCACTGGTTACATTTTTGGGACTATTTGGTGGGGTTTTGCTCTTAATCTCA 992
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 952 TGCAGAAGGTCACTGGTTACATTTTTGGAACTATTTGGTGGGGTTTTGCTCTTAATCTCA 1011
Query 993 TTGCATATTTCATCGCTTCTCATGTCGCTGGGGGATGTTGGTATGTTCTCGCAATACAGC 1052
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1012 TCGCATATTTCATCGCTTCTCATGTTGCTGGGGGATGTTGGTATGTTCTCGCAATACAGC 1071
Query 1053 GTGTTGCTTCTTGCATAAGACAGCAATGCATGAGAACCGGGGATTGCAATCTGAGTCTGG 1112
|||||||||||||||||||||| ||||| |||||||||||| | ||||||||||||||||
Sbjct 1072 GTGTTGCTTCTTGCATAAGACAACAATGTATGAGAACCGGGAACTGCAATCTGAGTCTGG 1131
Query 1113 CTTGCAAAGAAGAGGTCTGTTACCAATTTGTGTCACCGACAAGCACAGTTGGATATCCAT 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 CTTGCAAAGAAGAGGTCTGTTACCAATTTGTGTCACCGACAAGCACAGTTGGATATCCAT 1191
Query 1173 GCTTATCTGGAAACCTTACCAGTGTGGTCAATAAGCCTATGTGCTTAGACTCTAACGGAC 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GCTTATCTGGAAACCTTACCAGTGTGGTCAATAAGCCTATGTGCTTAGACTCTAACGGAC 1251
Query 1233 CATTCCGATATGGTATCTACCGTTGGGCACTTCCAGTCATCTCCAGCAACTCTCTTGCGG 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 CATTCCGATATGGTATCTACCGTTGGGCACTTCCAGTCATCTCCAGCAACTCTCTTGCGG 1311
Query 1293 TTAAGATCCTTTACCCCATCTTCTGGGGCCTAATGACTCTCAGCACATTCGCAAATGATC 1352
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1312 TTAAGATCCTTTACCCCATCTTCTGGGGCCTAATGACTCTCAGCACATTTGCGAATGATC 1371
Query 1353 TTGAGCCCACAAGCAACTGGCTCGAGGTTATTTTCAGTATAGTTATGGTCCTAAGCGGGT 1412
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1372 TTGAGCCCACAAGCAACTGGCTCGAGGTTATTTTCAGTATAGTTATGGTTCTAAGTGGCT 1431
Query 1413 TATTACTCTTCACGCTATTAATCGGAAACATTCAGGTGTTTTTGCAAGCGGTAATGGCGa 1472
| ||||| |||||||| || || ||||||||||||||||||||||| |||||||||||||
Sbjct 1432 TGTTACTTTTCACGCTGTTGATAGGAAACATTCAGGTGTTTTTGCATGCGGTAATGGCGA 1491
Query 1473 aaaaaaGGAAAATGCAGATAAGGTGTAGGGATATGGAATGGTGGATGAAACGTAGGCAGT 1532
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1492 AAAAAAGGAAAATGCAGATACGGTGTAGGGATATGGAATGGTGGATGAAACGTAGGCAGT 1551
Query 1533 TACCTTCCCGGTTAAGACAGAGGGTTAGGCGATTTGAGCGTCAGAGATGGAATGCCTTGG 1592
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1552 TACCTTCCCGGTTAAGACAGAGGGTTAGGCGATTTGAGCGGCAGAGATGGAATGCCTTGG 1611
Query 1593 GTGGAGAAGATGAGCTAGAACTTGTACAAGATTTACCTCCGGGTCTTCGAAGAGATATCA 1652
|||| ||||| |||||||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct 1612 GTGGTGAAGACGAGCTAGAACTTATACATGATTTGCCTCCGGGTCTTCGAAGAGATATCA 1671
Query 1653 AACGATATCTTTGCTTTGATCTCATTAACAAGGTGCCACTGTTCAGGGGCATGGACGACT 1712
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1672 AACGATATCTTTGCTTTGATCTCATTAACAAGGTGCCATTGTTCAGGGGCATGGACGACT 1731
Query 1713 TGATCCTCGACAACATTTGCGATCGGGCTAAGCCTCGCGTCTTCTCTAAAGACGAAAAGA 1772
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1732 TGATCCTCGACAACATTTGCGATCGGGCTAAGCCTCGAGTCTTCTCTAAAGACGAAAAGA 1791
Query 1773 TCATTCGTGAAGGAGATCCTGTACAGAGAATGATATTCATCATGCGTGGGCGAGTTAAAC 1832
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1792 TCATCCGTGAAGGAGATCCTGTACAGAGAATGATATTCATCATGCGTGGACGAGTCAAAC 1851
Query 1833 GTATCCAGAGCCTAAGCAAAGGCGTGATAGCCACTAGTACCCTCGAACCAGGGGGTTACT 1892
|||| |||||||||||||||||||| ||||||||||||| || |||||||| |||||||
Sbjct 1852 GTATACAGAGCCTAAGCAAAGGCGTCCTAGCCACTAGTACACTAGAACCAGGCGGTTACT 1911
Query 1893 TGGGTGACGAGCTACTCTCGTGGTGCCTACGTCGCCCGTTTCTGGACCGTCTACCCCCTT 1952
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1912 TGGGCGACGAGCTACTCTCATGGTGCCTACGTCGCCCGTTTCTGGACCGTCTTCCCCCTT 1971
Query 1953 CGTCAGCAACATTTGTCTGCCTAGACAACATCGAGGCATTCTCCCTCGGATGCGAAGATC 2012
| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1972 CCTCAGCAACATTTGTCTGCCTAGAAAACATCGAGGCATTCTCCCTCGGATCCGAAGATC 2031
Query 2013 TTAGGTACATTACCGACCATTTCCGTTATAAATTCGCAAACGAGCGGCTCAAGCGGACCG 2072
|||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 2032 TTAGGTACATTACCGATCATTTCCGTTATAAATTCGCGAACGAGCGGCTTAAGCGGACCG 2091
Query 2073 CAAGATACTATTCCTCAAATTGGAGGACGTGGGCAGCCGTGAATATTCAGATGGCGTGGC 2132
||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 2092 CAAGATACTATTCCTCAAACTGGAGGACGTGGGCAGCGGTAAATATTCAGATGGCGTGGC 2151
Query 2133 GCCGATGTAGGAAAAGAACCCGTGGTGAAAACATCGGCGGTTCGATGAGTCCTGTGTCGG 2192
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2152 GCCGGCGTAGGAAAAGAACCCGTGGTGAAAACATCGGCGGTTCGATGAGTCCTGTGTCGG 2211
Query 2193 AGAATAGCGTTGAAGGTAACAGTGAACGCCGGTTACTTCAGTATGCGGCTATGTTCATGT 2252
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2212 AGAATAGCATTGAAGGTAACAGTGAACGCCGGTTACTTCAGTATGCAGCTATGTTCATGT 2271
Query 2253 CCATTCGACCTCATGATCATCTCGAATAATAAAAAAGAAGTTCCAATATT-TATCGGTCC 2311
|||||||||| ||||||||||||||||||||| ||| |||||||||| || |||||||||
Sbjct 2272 CCATTCGACCGCATGATCATCTCGAATAATAATAAA-AAGTTCCAATTTTATATCGGTCC 2330
Query 2312 AAAT--T-GTTTGTTCCCATTGTTCATCCTCAATTGTTTACCTTTACT 2356
|||| | || ||||| ||||||| ||||||||||||||||||||||
Sbjct 2331 AAATAATTGTGTGTTC--ATTGTTCCTCCTCAATTGTTTACCTTTACT 2376
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116967269850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5