BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488388 Length=1794 Score E Sequences producing significant alignments: (Bits) Value AT5G15430.1 | Symbols: | Plant calmodulin-binding protein-rela... 2248 0.0 > AT5G15430.1 | Symbols: | Plant calmodulin-binding protein-related | chr5:5009876-5011737 FORWARD LENGTH=1862 Length=1862 Score = 2248 bits (1217), Expect = 0.0 Identities = 1577/1744 (90%), Gaps = 51/1744 (3%) Strand=Plus/Plus Query 70 TTTAATCTGATTAATGTGCAACATAATGGT-TTCTTCTCAGGT-CAA-GGATCTTCATCA 126 ||| || ||||||||||||| |||| | || | || | || | ||| || | ||| ||| Sbjct 150 TTTGAT-TGATTAATGTGCATCATATTCGTAATGTT-T-AGCTACAATGGTTTTTC-TCA 205 Query 127 AAAGGTTAGAGTTTTATGATTCCTGAATCAAGCATTCTCTTATTTTCGTTGTTCTTAAAC 186 ||||| |||||||||||||||||||||||||||||||||| | |||| ||||| || ||| Sbjct 206 AAAGGATAGAGTTTTATGATTCCTGAATCAAGCATTCTCTAACTTTCTTTGTTATT-AAC 264 Query 187 A--TTTGTAGTTCTTGAAtctctctctctctctcGCTCTAGCTGATTAATGGCTGAGGAG 244 | ||||||||| ||||| ||||||||| ||| | |||||||||||||||||| Sbjct 265 ATTTTTGTAGTTATTGAA------TCTCTCTCTGGCT-GA-TTGATTAATGGCTGAGGAG 316 Query 245 ACCGTACGTTTGCCTAATTCACCGAATGTAAACAGATCATGGAGAAGGATTTCTACTGGA 304 |||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||| Sbjct 317 ACCGTACGTTTGCCTAATTCGCCGGATGTAAACATATCATGGAGAAGGATTTCTACTGGA 376 Query 305 AAACTGAGTTTTTTATACACTGAAGAGAAAGTTCTTCCTAATTATCTCAGATCTCCCACT 364 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 377 AAACTGAGTTTTTTATACACTCAAGAGAAAGTTGTTCCTAATTATCTCAGATCTCCCACT 436 Query 365 GGTTCTTGTCATGATGCCTGCAAATATGGAAGGAAACATGAATCTGAAGATAAGCCAAAA 424 ||||||||||||||||| || ||||| ||||||||| ||||||||||||| ||||||| | Sbjct 437 GGTTCTTGTCATGATGCTTGTAAATACGGAAGGAAAGATGAATCTGAAGACAAGCCAAGA 496 Query 425 GTTCCACATCGCAAAAGGGTTAACAGAAGCTTTTCTGGAACTCTGAATTTGGATTCACCT 484 |||||||||||||||||||||| |||||||||||||||| || | || ||||||||||| Sbjct 497 GTTCCACATCGCAAAAGGGTTAGCAGAAGCTTTTCTGGAGCTATAAACTTGGATTCACCA 556 Query 485 TTGAGGAAGAAGGCATTGACCAAACCGGTGTTGAATCCTTCTTTTGGTTCTGGTAAATAT 544 ||||||||||||||||||| |||||| |||||| |||||| || ||| || | Sbjct 557 CTGAGGAAGAAGGCATTGACAAAACCGCTGTTGAGTCCTTC-------TC--GTAGATGT 607 Query 545 GATTCTGTTGGTGGCTCTGATCATGCGAATAGCGAAGTTAGAAACTTTTCTAGCGGAGTT 604 |||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||| Sbjct 608 GATTCTGTTGGTGGCTTTGATCATGCGAAGAGCCAAGTTAGAAACTTTTCTAGCGGAGTT 667 Query 605 TGTGATGTTAAGAAGAATCATGCAGATAGAACAAATAAAAAGGTAGTGCCTTTTTCTGAA 664 |||||||||||||||| |||||||||| |||||||| ||||||||||| || |||||||| Sbjct 668 TGTGATGTTAAGAAGAGTCATGCAGATGGAACAAATGAAAAGGTAGTGTCTGTTTCTGAA 727 Query 665 TCTCA-GTTAGCTGACTCGACTAAGCgaaagaagaagaagaagaagaagaCGGTCTATGT 723 ||| | ||||||||| ||||||||||| | ||||||||||||||||||||||||||||| Sbjct 728 TCT-AGGTTAGCTGATTCGACTAAGCG--A-AAGAAGAAGAAGAAGAAGACGGTCTATGT 783 Query 724 GTCTCGTGGAAGAGCTAAAGAGATTGTTGAACATAACAGGCGTGTCACTGCTTTGAAGCT 783 |||||| ||||| |||||||||||||||||||| || ||||||||||||||||| ||||| Sbjct 784 GTCTCGCGGAAGGGCTAAAGAGATTGTTGAACAAAAGAGGCGTGTCACTGCTTTAAAGCT 843 Query 784 GAAATCTGTTGCACAAACTGCAGCGATAGCTCTACGGCGAAGTACTGTGAAGAGAAAGAA 843 |||| |||||||||||||||||| ||| ||||| ||||| |||||||||||||||||||| Sbjct 844 GAAAGCTGTTGCACAAACTGCAGAGATTGCTCTTCGGCGTAGTACTGTGAAGAGAAAGAA 903 Query 844 GATGAATGGCGG------A---GCAGAACCAAAGAAGGCAGTTATGCCTTTAAGAAGAGC 894 |||||||||||| | ||||||| |||||||||||||||| ||||||||||||| Sbjct 904 GATGAATGGCGGATCAAAAGCTGCAGAACAAAAGAAGGCAGTTATGGCTTTAAGAAGAGC 963 Query 895 CTCAATGTCCTCAAAACGCTGTTCTCGATGCTTGAAGACAAAGAAAGAGAGTAATAGCTT 954 |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| Sbjct 964 CTCAATGTCCTCAAAAGGCTGTTCTCGATGCTTGAAGACAAAGAAGGAGAGTAATAGCTT 1023 Query 955 GAGTGTTCCTCTAATGAAAACCAGGAAACGTGTAGGTGAGAAGTGTAAAGACTTGGTTGA 1014 |||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||| Sbjct 1024 GAGTGTTCCTCTAAAGAAAACCAGGAAACATGTAGGTGACAAGTGTAAAGACTTGGTTGA 1083 Query 1015 AGAGAAAACTCTCTATGTGATTAAGATGGAAACAGGGGATGAGATTGTTGAGTCTGAACA 1074 |||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||| Sbjct 1084 AGAGAAAACTCTCTATGTTATTAAGATGGAAACAGTGGATGAGATTGTTGAATCTGAACT 1143 Query 1075 GAACCAGAGGTGTGTCATGGATTCACCTACTGATGACCCAAAGAGCGAAAAGAGCCAAGA 1134 ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 1144 GAACCAGAGGTGTGTCATGGATTCACCTATTGATGATCCAAAGAGCGAAAAGAGCCAAGA 1203 Query 1135 CGAAGCTGAGTGTCTTGAGACTGAACCTGATGATGAATCTTCTCGagaagagg-a-a-ga 1191 | ||| ||||||| |||||||||||| ||| ||||| ||||||| |||||||| | | || Sbjct 1204 CAAAGGTGAGTGTATTGAGACTGAACATGAAGATGAGTCTTCTCAAGAAGAGGAAGACGA 1263 Query 1192 agaagaagaagCTGAGAATGTGTCTTTCTCTGAAGATAAGAGCACAACAATGGAAGGAAA 1251 ||||||||||| ||||||||||||| ||||||||||||||| |||||||| ||||||||| Sbjct 1264 AGAAGAAGAAGATGAGAATGTGTCTGTCTCTGAAGATAAGAACACAACAAGGGAAGGAAA 1323 Query 1252 AAGCAAAGCCCTCTCAGCAGAATCCGCTGTAAATGGCAATTCGGCGAAACTGAGAATCAA 1311 |||||||||| ||||||||||||||||| ||| ||||||| || |||||||||||||| Sbjct 1324 AAGCAAAGCCTTCTCAGCAGAATCCGCTATAACTGGCAATGCGATGAAACTGAGAATCAG 1383 Query 1312 AAGAGGAAAGATTATAGATTTTGGATTACAAGGAAGCAGTCCAAGAAAGCTCAAGTTCGA 1371 |||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| | Sbjct 1384 AAGAGGAAAGATTATAGATTTTGGATCAGAAGGAAACAGTCCAAGAAAGCTCAAGTTCAA 1443 Query 1372 GAGAGGAAAAGTCGTCACAGGAGCTGACACAACCTCTAAATCCGGTGGTAGGAGACGCTC 1431 |||||||||| || | | ||||||||||||||||| ||||| |||||||||||||||| Sbjct 1444 GAGAGGAAAAATCATTTCCGGAGCTGACACAACCTCGAAATCTGGTGGTAGGAGACGCTT 1503 Query 1432 AAAGACCAAAGGAACCAACTTAAGCAACGACAAGGAACAACAACGCAAACCCAGAGTTGT 1491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1504 AAAGACCAAAGGAACCAACTTAAGCAACGACAAGGAACAACAACGCAAACCCAGAGTTGT 1563 Query 1492 TCTGAAACACCAAGACACACAGAAGAAGAGAGAAGCAAGAGTGTTGCTGTTCAACAAAGT 1551 ||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| Sbjct 1564 TCTGAAACACCAAGACACAGAGAAGAAGAGAGAATCAAGAGTGTTGTTGTTCAACAAAGT 1623 Query 1552 TATTAAGGAAACAGCTAATAAGCTTGTGCAGACTCGCAAGAGCAAAGTTAAGGCTTTAGT 1611 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1624 TATTAAGGAAACAGCTAATAAGCTAGTACAGACTCGCAAGAGCAAAGTTAAGGCTTTAGT 1683 Query 1612 GGGTGCTTTTGAGTCTGTCATATCTCTCCAAGAAAAGACTTCTTCTGCAACAATATAAAC 1671 |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1684 TGGTGCTTTCGAGTCTGTCATATCTCTCCAAGAAAAGACTTCTTCTGCAACAACATAAAC 1743 Query 1672 ACATAAAAATGATTATAAC-CAGAAGAATCTCTAACTAAATAATATTTTATTTTTTCTTT 1730 ||||||||||||||||| | || ||||||||||||||||||||| |||||||||||||| Sbjct 1744 ACATAAAAATGATTATA-CTCACAAGAATCTCTAACTAAATAATCTTTTATTTTTTCTT- 1801 Query 1731 CGCTTGTGTTTATGTATGTATGTATGTAAAGATATGTAGAGTTTGTAAGAGTGCAATGAC 1790 | ||||| |||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 1802 CACTTGTATTTATGTATGTATGTA---AAC-ATATGTAGAGTTTGTAAGAGTGCAATGAC 1857 Query 1791 TCAC 1794 |||| Sbjct 1858 TCAC 1861 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88754563560 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5