BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488388
Length=1794
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15430.1 | Symbols: | Plant calmodulin-binding protein-rela... 2248 0.0
> AT5G15430.1 | Symbols: | Plant calmodulin-binding protein-related
| chr5:5009876-5011737 FORWARD LENGTH=1862
Length=1862
Score = 2248 bits (1217), Expect = 0.0
Identities = 1577/1744 (90%), Gaps = 51/1744 (3%)
Strand=Plus/Plus
Query 70 TTTAATCTGATTAATGTGCAACATAATGGT-TTCTTCTCAGGT-CAA-GGATCTTCATCA 126
||| || ||||||||||||| |||| | || | || | || | ||| || | ||| |||
Sbjct 150 TTTGAT-TGATTAATGTGCATCATATTCGTAATGTT-T-AGCTACAATGGTTTTTC-TCA 205
Query 127 AAAGGTTAGAGTTTTATGATTCCTGAATCAAGCATTCTCTTATTTTCGTTGTTCTTAAAC 186
||||| |||||||||||||||||||||||||||||||||| | |||| ||||| || |||
Sbjct 206 AAAGGATAGAGTTTTATGATTCCTGAATCAAGCATTCTCTAACTTTCTTTGTTATT-AAC 264
Query 187 A--TTTGTAGTTCTTGAAtctctctctctctctcGCTCTAGCTGATTAATGGCTGAGGAG 244
| ||||||||| ||||| ||||||||| ||| | ||||||||||||||||||
Sbjct 265 ATTTTTGTAGTTATTGAA------TCTCTCTCTGGCT-GA-TTGATTAATGGCTGAGGAG 316
Query 245 ACCGTACGTTTGCCTAATTCACCGAATGTAAACAGATCATGGAGAAGGATTTCTACTGGA 304
|||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||
Sbjct 317 ACCGTACGTTTGCCTAATTCGCCGGATGTAAACATATCATGGAGAAGGATTTCTACTGGA 376
Query 305 AAACTGAGTTTTTTATACACTGAAGAGAAAGTTCTTCCTAATTATCTCAGATCTCCCACT 364
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 377 AAACTGAGTTTTTTATACACTCAAGAGAAAGTTGTTCCTAATTATCTCAGATCTCCCACT 436
Query 365 GGTTCTTGTCATGATGCCTGCAAATATGGAAGGAAACATGAATCTGAAGATAAGCCAAAA 424
||||||||||||||||| || ||||| ||||||||| ||||||||||||| ||||||| |
Sbjct 437 GGTTCTTGTCATGATGCTTGTAAATACGGAAGGAAAGATGAATCTGAAGACAAGCCAAGA 496
Query 425 GTTCCACATCGCAAAAGGGTTAACAGAAGCTTTTCTGGAACTCTGAATTTGGATTCACCT 484
|||||||||||||||||||||| |||||||||||||||| || | || |||||||||||
Sbjct 497 GTTCCACATCGCAAAAGGGTTAGCAGAAGCTTTTCTGGAGCTATAAACTTGGATTCACCA 556
Query 485 TTGAGGAAGAAGGCATTGACCAAACCGGTGTTGAATCCTTCTTTTGGTTCTGGTAAATAT 544
||||||||||||||||||| |||||| |||||| |||||| || ||| || |
Sbjct 557 CTGAGGAAGAAGGCATTGACAAAACCGCTGTTGAGTCCTTC-------TC--GTAGATGT 607
Query 545 GATTCTGTTGGTGGCTCTGATCATGCGAATAGCGAAGTTAGAAACTTTTCTAGCGGAGTT 604
|||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 608 GATTCTGTTGGTGGCTTTGATCATGCGAAGAGCCAAGTTAGAAACTTTTCTAGCGGAGTT 667
Query 605 TGTGATGTTAAGAAGAATCATGCAGATAGAACAAATAAAAAGGTAGTGCCTTTTTCTGAA 664
|||||||||||||||| |||||||||| |||||||| ||||||||||| || ||||||||
Sbjct 668 TGTGATGTTAAGAAGAGTCATGCAGATGGAACAAATGAAAAGGTAGTGTCTGTTTCTGAA 727
Query 665 TCTCA-GTTAGCTGACTCGACTAAGCgaaagaagaagaagaagaagaagaCGGTCTATGT 723
||| | ||||||||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 728 TCT-AGGTTAGCTGATTCGACTAAGCG--A-AAGAAGAAGAAGAAGAAGACGGTCTATGT 783
Query 724 GTCTCGTGGAAGAGCTAAAGAGATTGTTGAACATAACAGGCGTGTCACTGCTTTGAAGCT 783
|||||| ||||| |||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 784 GTCTCGCGGAAGGGCTAAAGAGATTGTTGAACAAAAGAGGCGTGTCACTGCTTTAAAGCT 843
Query 784 GAAATCTGTTGCACAAACTGCAGCGATAGCTCTACGGCGAAGTACTGTGAAGAGAAAGAA 843
|||| |||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||
Sbjct 844 GAAAGCTGTTGCACAAACTGCAGAGATTGCTCTTCGGCGTAGTACTGTGAAGAGAAAGAA 903
Query 844 GATGAATGGCGG------A---GCAGAACCAAAGAAGGCAGTTATGCCTTTAAGAAGAGC 894
|||||||||||| | ||||||| |||||||||||||||| |||||||||||||
Sbjct 904 GATGAATGGCGGATCAAAAGCTGCAGAACAAAAGAAGGCAGTTATGGCTTTAAGAAGAGC 963
Query 895 CTCAATGTCCTCAAAACGCTGTTCTCGATGCTTGAAGACAAAGAAAGAGAGTAATAGCTT 954
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 964 CTCAATGTCCTCAAAAGGCTGTTCTCGATGCTTGAAGACAAAGAAGGAGAGTAATAGCTT 1023
Query 955 GAGTGTTCCTCTAATGAAAACCAGGAAACGTGTAGGTGAGAAGTGTAAAGACTTGGTTGA 1014
|||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 1024 GAGTGTTCCTCTAAAGAAAACCAGGAAACATGTAGGTGACAAGTGTAAAGACTTGGTTGA 1083
Query 1015 AGAGAAAACTCTCTATGTGATTAAGATGGAAACAGGGGATGAGATTGTTGAGTCTGAACA 1074
|||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||
Sbjct 1084 AGAGAAAACTCTCTATGTTATTAAGATGGAAACAGTGGATGAGATTGTTGAATCTGAACT 1143
Query 1075 GAACCAGAGGTGTGTCATGGATTCACCTACTGATGACCCAAAGAGCGAAAAGAGCCAAGA 1134
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 1144 GAACCAGAGGTGTGTCATGGATTCACCTATTGATGATCCAAAGAGCGAAAAGAGCCAAGA 1203
Query 1135 CGAAGCTGAGTGTCTTGAGACTGAACCTGATGATGAATCTTCTCGagaagagg-a-a-ga 1191
| ||| ||||||| |||||||||||| ||| ||||| ||||||| |||||||| | | ||
Sbjct 1204 CAAAGGTGAGTGTATTGAGACTGAACATGAAGATGAGTCTTCTCAAGAAGAGGAAGACGA 1263
Query 1192 agaagaagaagCTGAGAATGTGTCTTTCTCTGAAGATAAGAGCACAACAATGGAAGGAAA 1251
||||||||||| ||||||||||||| ||||||||||||||| |||||||| |||||||||
Sbjct 1264 AGAAGAAGAAGATGAGAATGTGTCTGTCTCTGAAGATAAGAACACAACAAGGGAAGGAAA 1323
Query 1252 AAGCAAAGCCCTCTCAGCAGAATCCGCTGTAAATGGCAATTCGGCGAAACTGAGAATCAA 1311
|||||||||| ||||||||||||||||| ||| ||||||| || ||||||||||||||
Sbjct 1324 AAGCAAAGCCTTCTCAGCAGAATCCGCTATAACTGGCAATGCGATGAAACTGAGAATCAG 1383
Query 1312 AAGAGGAAAGATTATAGATTTTGGATTACAAGGAAGCAGTCCAAGAAAGCTCAAGTTCGA 1371
|||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| |
Sbjct 1384 AAGAGGAAAGATTATAGATTTTGGATCAGAAGGAAACAGTCCAAGAAAGCTCAAGTTCAA 1443
Query 1372 GAGAGGAAAAGTCGTCACAGGAGCTGACACAACCTCTAAATCCGGTGGTAGGAGACGCTC 1431
|||||||||| || | | ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1444 GAGAGGAAAAATCATTTCCGGAGCTGACACAACCTCGAAATCTGGTGGTAGGAGACGCTT 1503
Query 1432 AAAGACCAAAGGAACCAACTTAAGCAACGACAAGGAACAACAACGCAAACCCAGAGTTGT 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 AAAGACCAAAGGAACCAACTTAAGCAACGACAAGGAACAACAACGCAAACCCAGAGTTGT 1563
Query 1492 TCTGAAACACCAAGACACACAGAAGAAGAGAGAAGCAAGAGTGTTGCTGTTCAACAAAGT 1551
||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 1564 TCTGAAACACCAAGACACAGAGAAGAAGAGAGAATCAAGAGTGTTGTTGTTCAACAAAGT 1623
Query 1552 TATTAAGGAAACAGCTAATAAGCTTGTGCAGACTCGCAAGAGCAAAGTTAAGGCTTTAGT 1611
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1624 TATTAAGGAAACAGCTAATAAGCTAGTACAGACTCGCAAGAGCAAAGTTAAGGCTTTAGT 1683
Query 1612 GGGTGCTTTTGAGTCTGTCATATCTCTCCAAGAAAAGACTTCTTCTGCAACAATATAAAC 1671
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1684 TGGTGCTTTCGAGTCTGTCATATCTCTCCAAGAAAAGACTTCTTCTGCAACAACATAAAC 1743
Query 1672 ACATAAAAATGATTATAAC-CAGAAGAATCTCTAACTAAATAATATTTTATTTTTTCTTT 1730
||||||||||||||||| | || ||||||||||||||||||||| ||||||||||||||
Sbjct 1744 ACATAAAAATGATTATA-CTCACAAGAATCTCTAACTAAATAATCTTTTATTTTTTCTT- 1801
Query 1731 CGCTTGTGTTTATGTATGTATGTATGTAAAGATATGTAGAGTTTGTAAGAGTGCAATGAC 1790
| ||||| |||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1802 CACTTGTATTTATGTATGTATGTA---AAC-ATATGTAGAGTTTGTAAGAGTGCAATGAC 1857
Query 1791 TCAC 1794
||||
Sbjct 1858 TCAC 1861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88754563560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5