BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488391

Length=686
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G15460.1 | Symbols: MUB2 | membrane-anchored ubiquitin-fold ...   701    0.0  


> AT5G15460.1 | Symbols: MUB2 | membrane-anchored ubiquitin-fold 
protein 2 | chr5:5018711-5020703 REVERSE LENGTH=766
Length=766

 Score =  701 bits (379),  Expect = 0.0
 Identities = 434/460 (94%), Gaps = 5/460 (1%)
 Strand=Plus/Plus

Query  119  TATGGCAGAGGTTAAGGATCAATTAGAGATTAAGTTCCGGCTCAATGATGGTTCCGATAT  178
            |||||||||||| ||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct  155  TATGGCAGAGGTGAAGGATCAATTAGAGATTAAGTTCCGGCTTAACGATGGTTCTGATAT  214

Query  179  CGGTCCTAAATCGTTTCCTGATGCTACTACCGTTGCTACATTGAAAGAAACTGTTGTTGC  238
            ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  215  CGGTCCTAAATTGTTTCCTGATGCTACTACCGTTGCTACATTGAAAGAAACCGTTGTTGC  274

Query  239  TCAGTGGCCAAGAGATAAGGAGAATGGGCCAAAGACAGTGAAAGATGTGAAGTTGATAAG  298
            |||||||||||||||||||||||| ||||||||||||||||||||||| ||  |||||||
Sbjct  275  TCAGTGGCCAAGAGATAAGGAGAACGGGCCAAAGACAGTGAAAGATGTTAAACTGATAAG  334

Query  299  CGCGGGTAGAATATTGGAGAACAACAAGACGGTTGGAGATTGCAGGAGTCCTGTCGGCAA  358
            ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct  335  CGCGGGTAGAATATTGGAGAACAACAAAACGGTTGGAGATTGCAGGAGTCCCGTCGGCAA  394

Query  359  TTTCTCAGGTGCTGTCACCACAATGCATGTTATAATTCATCATCAAGTTACTgaaaaaga  418
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| 
Sbjct  395  TTTCTCAGGTGCTGTCACCACAATGCATGTTATAATTCAACATCAAGTTACTGAAAAAG-  453

Query  419  aaagaagaagaagaagaagTCTAAAGGTGATCTGAAACAGAACAAATGTGTCTGTTTATG  478
             || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  454  -AA-AAGAAGAAGAAGAAGCCTAAAGGTGATCTGAAACAGAACAAATGTGTCTGTTTATG  511

Query  479  TTTTGGAGCTCGGTGTTAACAAATGTGCAAGACAAGTAGAGTTaa--aaaaaaCCTTGGG  536
            |||||||||||| ||||||||| ||||||||||||||||||  |   |||||| ||||||
Sbjct  512  TTTTGGAGCTCGTTGTTAACAATTGTGCAAGACAAGTAGAGAGAGTTAAAAAAGCTTGGG  571

Query  537  AGATTCACATTCTATTCTTGAGCCTTCTTCAATACCTTTT  576
            ||||||||||||| ||||||||||||||||||||||||||
Sbjct  572  AGATTCACATTCTGTTCTTGAGCCTTCTTCAATACCTTTT  611


 Score =  122 bits (66),  Expect = 3e-27
 Identities = 97/110 (88%), Gaps = 9/110 (8%)
 Strand=Plus/Plus

Query  577  CATGATTGGCTTTTTGATCGCTTGAGGTTTGGTTTCTAATGTAATTCTGATTCGCAACAC  636
            |||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct  652  CATGATTGGCTTTTTGATCGCTTGAGGTTTGGTTTCTATTGTATTTCGGATTCGCAACAC  711

Query  637  CGTGGAATTATTATTATTATTAGGTATCAAAACAAATTTGCACGGAATAA  686
            |||||||  |||||||      |||| |||| ||||||||||||||||||
Sbjct  712  CGTGGAA--ATTATTA------GGTAACAAA-CAAATTTGCACGGAATAA  752



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33204771167


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5