BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488402
Length=3491
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15580.1 | Symbols: LNG1 | longifolia1 | chr5:5068301-507249... 5108 0.0
AT5G15581.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1031 0.0
AT3G02170.1 | Symbols: LNG2 | longifolia2 | chr3:396012-399779 ... 213 9e-54
> AT5G15580.1 | Symbols: LNG1 | longifolia1 | chr5:5068301-5072492
REVERSE LENGTH=3540
Length=3540
Score = 5108 bits (2766), Expect = 0.0
Identities = 3283/3524 (93%), Gaps = 69/3524 (2%)
Strand=Plus/Plus
Query 1 GAGCTTTGTCATAAAttttttttttAAAAATACTAAACAATTCAATTACATTCTCTTACA 60
||||||||||||||||||| ||| ||| |||| |||| ||||||||||||||||||||||
Sbjct 1 GAGCTTTGTCATAAATTTTATTTGTAAGAATAATAAAAAATTCAATTACATTCTCTTACA 60
Query 61 ATGTATAAATCTACGGATACACACGAATACATGTGTACACGCATGTGTATGTACGTACTA 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATGTATAAATCTACGGATACACACGAATACATGTGTACACGCATGTGTATGTACGTACT- 119
Query 121 CACATATACATTATTACACAACCCATGTTTATATATGGCTTGAAAAGCTTCTCCATATAA 180
||||| ||||||||||| |||| |||||| ||||| |||||||||||||||||||||||
Sbjct 120 -ACATA-ACATTATTACATAACCGATGTTTTTATATCGCTTGAAAAGCTTCTCCATATAA 177
Query 181 TTGTAGAGAGAGCTCTTTGCCTTTTACAGACTCACTTCTCTCAAATAAC-AC-AC-ACC- 236
|||||||||||||||||||||||||||||||||||||||| |||| ||| || || |||
Sbjct 178 TTGTAGAGAGAGCTCTTTGCCTTTTACAGACTCACTTCTCACAAAGAACAACAACAACCA 237
Query 237 -Gaaaaaaa-a-aCCATTATTttcttcttctcttctttcttcttcAAGGAACCCTCCAAG 293
||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 AAAAAAAAAGATATCATTATTTTCTTCTTCTCTTCTTTCTTCTTCAAGGAACCCTCCAAG 297
Query 294 AGAACAGACACAGACAAACCTAATTCCTTGTCTGCTCATAACTTCACAAGTAGCTTTACC 353
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AGAACATACACAGAGAAACCTAATTCCTTGTCTGCTCATAACTTCACAAGTAGCTTTACC 357
Query 354 TTTGTCTTAATGCTGGGTTCTTCTATGTCCTCCTGTCTCTTCCTCTTCTTCTTCTACTAC 413
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 358 TTTGTCTTAATGCTGGGTTCTTCTTTGTCCTCCTGTCTCTTCTTCTTCTTCTTCTACTAC 417
Query 414 TTCCCCTGAGACACAAAACAGAGGAGATATCAGAAAGTGGAGATTTTCAAGAATTGGTAA 473
|||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 418 TTCCTCTGAGACACAAAACAGAGGAGATAACAG--AGTGGAGATTTTCAAGAATTGGTAA 475
Query 474 TGAG-AGAATCTTAAAGTTCCAAAGTTTTTTAAGAGTCAAAAACCTTcagagaccagagc 532
|||| |||||||||||||||||||| ||||| |||||||| ||||||| ||| ||||||
Sbjct 476 TGAGAAGAATCTTAAAGTTCCAAAG-TTTTTCAGAGTCAACAACCTTCTGAGGCCAGAGT 534
Query 533 tcagaagacagagaagtagaagaagaagaagaTGTCGGCGAAGCTTTTGTACAACTTGTC 592
| |||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 535 TAAGAAGACAAAGAAGT---AGAAGAAGAAGATGTCGGCGAAGCTTTTGTATAACTTGTC 591
Query 593 AGATGAGAATCCAAATCTGAATAAACAGATTGGATGTATGAATGGGATCTTTCAGGTGTT 652
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GGATGAGAATCCAAATCTGAATAAACAGATTGGATGTATGAATGGGATCTTTCAGGTGTT 651
Query 653 TTACCGGCAACATTATCCACCAAGACGTGTTACCGTCGCCGGAGATGAGCTCAAGTCTCT 712
||||||||||||||||||||| |||| | | ||| ||||||||||||||||||||||
Sbjct 652 TTACCGGCAACATTATCCACCGAGAC--G-T---GTCACCGGAGATGAGCTCAAGTCTCT 705
Query 713 TCCTTCAGGCAAAACAAGTGACAATGTCGGTGATACCAACATTTCaag-ggacaagaaag 771
||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||| |
Sbjct 706 TCCTTCAGGCAAAGCAAGTGACAATGTCGGTGATACCAACATTTC-AGCGGACAAGAAGG 764
Query 772 aaacggagaagagtaagaagaagaaggctgcaaaggagaaacagaggGGAGTCTCCTCTG 831
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 765 AAACGGAGAAGAGTAAGAAGAAGAAGACTGCAAAGGAGAAACAGAGGGGAGTATCCTCTG 824
Query 832 AATCGTCCTCGAGGTTATCCTTTTCTTCTTCACCATGCTCCTCGAGCTTCTCATCTGCAG 891
|||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 825 AATCGTCCTCGAGGTTGTCGTTTTCTTCATCACCATGCTCCTCGAGCTTCTCATCTGCAG 884
Query 892 ATATTAGCACCACGGCTTCCCAGTTTGAACAGTCCGGTTTGATTCAAACGAGTAATGGTG 951
||||||||||||||||||| |||||||||||| |||| | || |||||||||||
Sbjct 885 ATATTAGCACCACGGCTTCTCAGTTTGAACAGCCCGG--T--TT-----GAGTAATGGTG 935
Query 952 AGAATCCGGTAAGAGAACCAACCAATGGGTCGCCAAGGTGGGGCGGTTTAACGATGCCGA 1011
||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||| |
Sbjct 936 AGAATCCTGTAAGAGAACCGACCAATGGGTCGCCAAGGTGGGGCGGTTTAATGATGCCAA 995
Query 1012 GTGATTTAAGGGAGCTTGTGAAAAGCTCTATTCATAAGGAGACAAGAACCAGAGATGAAG 1071
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 996 GTGATATAAGGGAGCTTGTGAGAAGCTCTATTCATAAGGAGACAAGAACCAGAGATGAAG 1055
Query 1072 AAGCCTTGTCTCAGCAGCCTAAATCAGCCAGAGCTAATGTGTCTCTTCTCAAAGAATCGT 1131
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1056 AAGCCTTGTCTCAGCAGCCTAAATCAGCCAGAGCTAATGTGTCTCTTCTCAAAGAATCAT 1115
Query 1132 CACCATCTCGGAATTCTAATGAATGGAGCGAGGGACGGAGAGTAGTGAAGCTGAAGGACA 1191
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1116 CACCATCTCGGAATTCTAATGAATGGAGTGAGGGACGGAGAGTAGTGAAGCTGAAAGACA 1175
Query 1192 GTCCTCGGTTCTCTTACGATGAGAGGGAGACGAGAAAGACAGGCGCCAAGTTGAAAGAGA 1251
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1176 GTCCTCGGTTCTCTTACGATGAGAGGGAGACGAGAAAGACAGGGGCCAAGTTGAAAGAGA 1235
Query 1252 CCCCGAGATTGTCATTAGACAGTAGATCGAATTCCTTTAGGAGCGCAAGATCTAGTTATT 1311
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1236 CCCCGAGGTTGTCATTAGACAGTAGATCGAATTCCTTTAGGAGCGCAAGATCTAGTTGTT 1295
Query 1312 CAACAGAGCCGCAAGAGCTTGTAAGC-GGTCACAGAAGAACAACATCAAGCGTCGTTGCA 1370
|| ||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1296 CACCAGAGCCACAAGAGCTTGTAA-CAGGTCACAGAAGAACAACATCAAGCGTCGTTGCA 1354
Query 1371 AAACTGATGGGTCTTGAAGTCATTCCAGACGAGCCTGTGATCGTTCATAATAGAGAAAAT 1430
|||||||||||||||||||| |||||||| |||||||||| | |||| ||||||||||||
Sbjct 1355 AAACTGATGGGTCTTGAAGTAATTCCAGATGAGCCTGTGACCATTCAGAATAGAGAAAAT 1414
Query 1431 CGCTTCTGCGACTCCCCGAGGCCAACTTCCCGAGTGGAAGTAGATCTACAAAGATCAAGA 1490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 CGCTTCTGCGACTCCCCGAGGCCAACTTCCCGAGTGGAAGTAGATCTACAAAGATCAAGA 1474
Query 1491 GGTTCTGATTCATTCAAAAAGATGATGACTGCTAAGTTTCCTATGAAAGCATCTCCATGG 1550
|||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1475 GGTTTTGATTCAATCAAAAAGATGATGCCTGCTAAGTTTCCTATGAAAGCATCTCCATGG 1534
Query 1551 GCGCAAGTGGATTGTGCCAAGAACCAAGTCAAAGCAGCAGACGCTACTACGCTGACAGTT 1610
|||||||| ||| |||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1535 GCGCAAGTTGATGGTGCCAAGAACCAAGTCAAAATACCAGACGCTACTACGCTGACAGTT 1594
Query 1611 TATGGTGAGATACAGAAGCGGCTTTCACAGCTTGAGTTTAAAAAGTCCGAGAAAGACCTC 1670
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1595 TATGGTGAGATACAGAAGCGGCTTTCACAGCTTGAGTTCAAAAAGTCCGAGAAAGACCTC 1654
Query 1671 AGAGCTCTTAAGCAAATACTCAAAGCAATGGAGAAGACGCAGCAGTTGATAAGC-AA-A- 1727
|| |||||||||||||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 1655 AGGGCTCTTAAGCAAATACTCGAAGCAATGGAGAAGACGCAGCAGTTGATAAGCAAAGAT 1714
Query 1728 GATGATGACAACAAAATTCTATGTTCAACCAATTTTATGCAGAG-AACAGATCAGCCGAT 1786
|||||||||||||||| ||||||||||| ||||||||||||||| || | ||||||| ||
Sbjct 1715 GATGATGACAACAAAACTCTATGTTCAAGCAATTTTATGCAGAGAAATA-ATCAGCCAAT 1773
Query 1787 TTCATTTGTAACAAAC-CCGTCGTCCAAGAATTCCAAATCTTCCTCTATCGTGGTTATGA 1845
| ||| || || |||| || ||||||| ||||| ||||| |||||||||||||||||||
Sbjct 1774 TCCATCTGCAATAAACACC-TCGTCCATGAATTTTAAATCATCCTCTATCGTGGTTATGA 1832
Query 1846 AAGCAGCTGCAACTCCAGTCTTCAAAGAGACAGGCATTTCTGGTTCCGCCTCTTTCTCCC 1905
|||||||| | |||||||||||||||| ||||||||| | ||||| || ||||||||||
Sbjct 1833 AAGCAGCTACCGCTCCAGTCTTCAAAGACACAGGCATTGCAGGTTCTGCGTCTTTCTCCC 1892
Query 1906 CGCGGAATGTTGCTTTACCAAATGTCAAGGTTGGAAACCTGAGGCAACCCCAGAAAGTCA 1965
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1893 CGCGGAATGTTGCTTTACCAAATGTCAAGGTTGGAAACCTGAGGCAAGCCCAGAAAGTCA 1952
Query 1966 TTCCGAGGAAGCAGAGTGCCATGGATGAGACCTCGAGGCCAGGATTTTACAAGGGCCAGA 2025
||||||||||||||||||| ||||||| |||| |||||||||||| ||||||||||||||
Sbjct 1953 TTCCGAGGAAGCAGAGTGCTATGGATGTGACCCCGAGGCCAGGATATTACAAGGGCCAGA 2012
Query 2026 CAGATTCCACAATGAAAAACACTAGTACCAGGCCACTACAATTGAAAAGCGACATGGCCG 2085
|||| |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||
Sbjct 2013 CAGAATCCACAATGAAAAACACTAGTACCAGACCATTACAATCGAAAAGCGACATGGCCA 2072
Query 2086 AGTCAGGGAAGATCCAGAAGCCGT-GTGTCAGCCCAAGAACACCACCAAAGAAGCTCGGG 2144
|||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| |||
Sbjct 2073 AGTCAGGGAAGATCCAGAAGCC-TAGTGTCAGCCTAAGAACACCACCAAAGAAGCTTGGG 2131
Query 2145 TTCGAGAAGCAGTCTCGACCAACATCTCCAAAACCAGAAC----C--GAA-CA-AG---- 2192
||||||||||||||||| |||||||| ||||||||||||| | ||| || ||
Sbjct 2132 TTCGAGAAGCAGTCTCGGCCAACATCCCCAAAACCAGAACTGAACAAGAACCAGAGACAA 2191
Query 2193 -ATC-CAG-AGACAACAGACAGAGTCAGCCTCCCCGAGAAGAAAACCAGGGATAAAATCT 2249
| | ||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2192 CAACTCAGTAGGCAACAGACAGAGTCAGCCTCCCCGAGAAGAAAGCCAGGGATAAAATCT 2251
Query 2250 CGTGGCCTACAGCAATCTGAAGACCGTTTAAGTGAAGAAAGCAGTGACTTGAGAAGTCTA 2309
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2252 CGTGGCCTACAGCAATCTGAAGACCGTTTAAGTGATGAAAGCAGTGACTTGAGAAGTCTA 2311
Query 2310 CGATCTGACAGCAACGTAAGCTTGGCCTCTAACCTTGACACTGAGGTTACAAGCAGGTCT 2369
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 2312 AGATCTGACAGCAACGTAAGCTTGGCCTCTAACCTTGATACTGAGGTTACAAGCAGGTAT 2371
Query 2370 AACTATGAGAGGAACAGTGACATTACGGAGCAGCACACCCCGAAACAAAGGAGTCCAGAC 2429
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2372 AACTATGAGAGGAACAGCGACATTACGGAGCAGCACACCCCGAAACAAAGGAGTCCAGAC 2431
Query 2430 TTGGGAATGAGGTCGTTGCCAAAACCTTTGAAAGTTACAGTGGAGCAGCCCAGCCCGGTT 2489
||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 2432 TTGGGAATGAGGTCGCTGTCAAAACCTCTGAAAGTTACAGTGGAGCAGCCCAGCCCGGTG 2491
Query 2490 TCAGTTCTTGATGTAGCTTTCGATGAAGATGAGTCACCATCCCCTGTGCGGAAGATATCC 2549
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 2492 TCAGTTCTTGATGTAGCTTTCGACGAAGATGATTCACCATCCCCTGTGCGGAAGATATCC 2551
Query 2550 ATTGTATTTAAAGAGGACG-CTAATCTAAGTTCTGAAGAGTCCCAGTGGATGAACAAGCA 2608
||||| ||||||||||||| | ||||||||||||||||||||||| |||||||||||| |
Sbjct 2552 ATTGTCTTTAAAGAGGACGAC-AATCTAAGTTCTGAAGAGTCCCATTGGATGAACAAGAA 2610
Query 2609 GAGCAACTTATGTAGATCGATTGTGTGGCCTGAGAGTAACGCGACTCTCAAGCAGCCTGA 2668
| ||||||||||||||||||||||||||||||||||||| ||| ||| ||||| |||||
Sbjct 2611 CAACAACTTATGTAGATCGATTGTGTGGCCTGAGAGTAACACGAGTCTAAAGCAACCTGA 2670
Query 2669 TGCCGAAGTTATGGAGGATTTCATGGAAGAAGATGCTGAATTCAAAAATGGTGACCACAA 2728
||| ||| ||| ||||| |||||||||||| ||||| |||||||||||||||||||||||
Sbjct 2671 TGCTGAACTTACGGAGGGTTTCATGGAAGACGATGCCGAATTCAAAAATGGTGACCACAA 2730
Query 2729 GTACGTCTCAGAGATACTGTTGGCATCAGGGTTTCTGCGAGATATCGACTACAGCATGAT 2788
|||| ||||||||||| |||||||||||||| |||| |||||||||||||||||||||||
Sbjct 2731 GTACATCTCAGAGATAATGTTGGCATCAGGGCTTCTACGAGATATCGACTACAGCATGAT 2790
Query 2789 AAGCATTCAGCTGCACCAAGCACACCTACCGATCAACCCGAGCCTTTTCTTTGTACTGGA 2848
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2791 AAGCATCCAGCTGCACCAAGCACACCTACCGATCAACCCGAGCCTTTTCTTTGTACTGGA 2850
Query 2849 ACAGAACAAGACAAGCAATGTGAGTCCACAGGACAACAAGCACAAAGGTAGAGGATTTGG 2908
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 2851 ACAGAACAAGACAAGCAATGTGAGTCTACAGGACAACAAGCACAAAGGCAGAGGATTTGG 2910
Query 2909 ACAACAACAAACGGTGAACCTGATAGAGAGAAGCAAGAGGAAGCTCGTATTTGACACCAT 2968
|||||||||||||||||||||| | |||||||| |||||||||||| |||||||||||||
Sbjct 2911 ACAACAACAAACGGTGAACCTGGTTGAGAGAAGTAAGAGGAAGCTCATATTTGACACCAT 2970
Query 2969 CAACGAGATCTTAGCTCACAGATTCGCTGCAGAAGGGTGTACGAAGCGACCATCCATAAT 3028
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 2971 CAACGAGATCTTAGCTCACAGATTCGCTGCAGAAGGGTGTACAAAGCAACCATCCATAAC 3030
Query 3029 ATCATCAATCAGCACGCAAAGGATACCCGTAAAAAGTTCAAGAGGGAAAGAGCTTCTGCA 3088
|| |||||||||||||||||||| || || |||||||||||||||| |||||||||||||
Sbjct 3031 ATTATCAATCAGCACGCAAAGGACACACGAAAAAAGTTCAAGAGGGGAAGAGCTTCTGCA 3090
Query 3089 AACTCTGTGTTCAGAGATTGATCGATTACAAGATAACTCAAAGTGTATCTTGGATGAAGA 3148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3091 AACTCTGTGTTCAGAGATTGATCGATTACAAGATAACTCAAAGTGTATCTTGGATGAGGA 3150
Query 3149 TGATGAAGACCTCATTTGGGAGGACCTGCAAAGCCATGGCATGAACTGGAAGGAGATTGA 3208
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 3151 CGATGAAGACCTCATTTGGGAGGATCTGCAAAGCCATGGCATGAACTGGAAGGAGATTGA 3210
Query 3209 AGGAGAGATACCAGGGTTAGTGTTAGACATTGAGAGGCTTATCTTCAAGGACTTGATTGG 3268
|||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 3211 AGGAGAGACACCAGGGTTAGTGTTAGACATTGAGAGGCTAATCTTCAAAGACTTGATTGG 3270
Query 3269 CGAAGTTGTGACTAGCGAGGTTGCAGCTTTTCC-AGGAACGCTCAGAGGGCAACCAAGAC 3327
||||||||||| |||||| ||||||||||||| ||| | |||||| ||||||||||| |
Sbjct 3271 TGAAGTTGTGACAAGCGAGTTTGCAGCTTTTCCAAGG-ATGCTCAGTGGGCAACCAAGGC 3329
Query 3328 AGCTTTTCCATTGCTAATAATATTCCTAATTAATCTTCACTTAGAATTGTAAATCAAGGA 3387
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3330 AGCTTTTTCATTGC---TAATATTCCTAATTAATCTTCACTTAGAATTGTAAATCAAGGA 3386
Query 3388 ATCTAAATCATCCATTTTACAGAGTTGAGAACATTTGGTTTCTTGGTTCTCTGAAAAGCC 3447
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3387 ATCTAAATCATCCATTTTACAGAGTTGAGAACATTTGGTTTCTTGGTTCTCTGAACC-CC 3445
Query 3448 TTTTCCTATGTTCTCTTCATAATTATTTATGTAAACTTCTTAAA 3491
||| | |||||||| ||| || || |||||||||||||| ||||
Sbjct 3446 TTT-CTTATGTTCTTTTCTTAGTTGTTTATGTAAACTTCATAAA 3488
> AT5G15581.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf
apex; Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr5:5071621-5072492 FORWARD LENGTH=872
Length=872
Score = 1031 bits (558), Expect = 0.0
Identities = 676/729 (93%), Gaps = 23/729 (3%)
Strand=Plus/Minus
Query 1 GAGCTTTGTCATAAAttttttttttAAAAATACTAAACAATTCAATTACATTCTCTTACA 60
||||||||||||||||||| ||| ||| |||| |||| ||||||||||||||||||||||
Sbjct 872 GAGCTTTGTCATAAATTTTATTTGTAAGAATAATAAAAAATTCAATTACATTCTCTTACA 813
Query 61 ATGTATAAATCTACGGATACACACGAATACATGTGTACACGCATGTGTATGTACGTACTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 ATGTATAAATCTACGGATACACACGAATACATGTGTACACGCATGTGTATGTACGTACTA 753
Query 121 CACATATACATTATTACACAACCCATGTTTATATATGGCTTGAAAAGCTTCTCCATATAA 180
|| || ||||||||||| |||| |||||| ||||| |||||||||||||||||||||||
Sbjct 752 CA--TA-ACATTATTACATAACCGATGTTTTTATATCGCTTGAAAAGCTTCTCCATATAA 696
Query 181 TTGTAGAGAGAGCTCTTTGCCTTTTACAGACTCACTTCTCTCAAATAACA-CA-CA-CCG 237
|||||||||||||||||||||||||||||||||||||||| |||| |||| || || ||
Sbjct 695 TTGTAGAGAGAGCTCTTTGCCTTTTACAGACTCACTTCTCACAAAGAACAACAACAACCA 636
Query 238 aaaaaaaaaC----CATTATTttcttcttctcttctttcttcttcAAGGAACCCTCCAAG 293
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 AAAAAAAAAGATATCATTATTTTCTTCTTCTCTTCTTTCTTCTTCAAGGAACCCTCCAAG 576
Query 294 AGAACAGACACAGACAAACCTAATTCCTTGTCTGCTCATAACTTCACAAGTAGCTTTACC 353
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 AGAACATACACAGAGAAACCTAATTCCTTGTCTGCTCATAACTTCACAAGTAGCTTTACC 516
Query 354 TTTGTCTTAATGCTGGGTTCTTCTATGTCCTCCTGTCTCTTCCTCTTCTTCTTCTACTAC 413
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 515 TTTGTCTTAATGCTGGGTTCTTCTTTGTCCTCCTGTCTCTTCTTCTTCTTCTTCTACTAC 456
Query 414 TTCCCCTGAGACACAAAACAGAGGAGATATCAGAAAGTGGAGATTTTCAAGAATTGGTAA 473
|||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 455 TTCCTCTGAGACACAAAACAGAGGAGATAACAGA--GTGGAGATTTTCAAGAATTGGTAA 398
Query 474 TGAGA-GAATCTTAAAGTTCCAAAGTTTTTTAAGAGTCAAAAACCTTcagagaccagagc 532
||||| |||||||||||||||||||||||| | ||||||| ||||||| ||| ||||||
Sbjct 397 TGAGAAGAATCTTAAAGTTCCAAAGTTTTTCA-GAGTCAACAACCTTCTGAGGCCAGAGT 339
Query 533 tcagaagacagagaagtagaagaagaagaagaTGTCGGCGAAGCTTTTGTACAACTTGTC 592
| |||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 338 TAAGAAGACAAAGAAGTAGAAGAAGAAGA---TGTCGGCGAAGCTTTTGTATAACTTGTC 282
Query 593 AGATGAGAATCCAAATCTGAATAAACAGATTGGATGTATGAATGGGATCTTTCAGGTGTT 652
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 GGATGAGAATCCAAATCTGAATAAACAGATTGGATGTATGAATGGGATCTTTCAGGTGTT 222
Query 653 TTACCGGCAACATTATCCACCAAGACGTGTTACCGTCGCCGGAGATGAGCTCAAGTCTCT 712
||||||||||||||||||||| |||||||| |||| | ||||||||||||||||||
Sbjct 221 TTACCGGCAACATTATCCACCGAGACGTGTCACCG--G----AGATGAGCTCAAGTCTCT 168
Query 713 TCCTTCAGG 721
|||||||||
Sbjct 167 TCCTTCAGG 159
> AT3G02170.1 | Symbols: LNG2 | longifolia2 | chr3:396012-399779
REVERSE LENGTH=3300
Length=3300
Score = 213 bits (115), Expect = 9e-54
Identities = 304/392 (78%), Gaps = 26/392 (7%)
Strand=Plus/Plus
Query 546 aagtagaagaagaagaagaTGTCGGCGAAGCTTTTGTACAACTTGTCAGATGAGAATCCA 605
||||||| ||||||| | ||||| || || ||| | || |||||||||||||||||||||
Sbjct 370 AAGTAGAGGAAGAAG-ATATGTCTGCAAAACTTCTATATAACTTGTCAGATGAGAATCCA 428
Query 606 AATCTGAATAAACAGATTGGATGTATGAATGGGATCTTTCAGGTGTTTTACCGGCAACAT 665
||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 429 AATCTGAATAAACAGTTTGGATGCATGAATGGGATCTTTCAAGTGTTTTACCGGCAACAT 488
Query 666 TATCCAC-CAAGACGTGTTACCGTCGCCGGAGATG-AGCTCAAGTCTCTT-CCTTCAGGC 722
| ||| | | | || || |||||| |||| | | || |||||| || ||| ||||
Sbjct 489 TGTCC-CGCGACACCAGTCACCGTCTCCGGCGGCGCAGAG-AAGTCT-TTGCCTCCAGGG 545
Query 723 AAAACAAGTGACAATGTCGGTGATACCAACATTTCaagggacaagaaagaaacggaga-- 780
||| ||| | | |||||||| |||||||| ||| || || | ||||||||||
Sbjct 546 GAAAGAAGAGGTAGCGTCGGTGAAACCAACATGGAAAGTGATAA-A--GAAACGGAGAGG 602
Query 781 ag-agta--agaa-gaagaaggctgca--aag-gagaaacagaggGGAGTCTCCTCTGAA 833
|| |||| | || ||||||| ||||| || ||||| || || |||||| | ||||
Sbjct 603 AGTAGTACCAAAAAGAAGAAGTCTGCAGCAAAAGAGAAGCATAG---AGTCTCTTTTGAA 659
Query 834 TCGTCCTCGAGGT-TATCCTTTTCTTCTTCACCATGCTCCTCGAGCTTCTCATCTGCAGA 892
|| || || || | || ||||| ||||| ||| ||||||| |||||||| ||||||||
Sbjct 660 TCATCTTCAAGACCT-TCATTTTCGTCTTCTCCACGCTCCTCTAGCTTCTCGTCTGCAGA 718
Query 893 TATT-AGCACCACGGCTTCCCAGTTTGAACAG 923
| | || ||||| ||||| || ||||| |||
Sbjct 719 -AGTCAGTACCACAGCTTCTCAATTTGACCAG 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 173778290552
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5