BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488404

Length=539
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G15600.1 | Symbols: SP1L4 | SPIRAL1-like4 | chr5:5078200-507...   676    0.0  


> AT5G15600.1 | Symbols: SP1L4 | SPIRAL1-like4 | chr5:5078200-5079091 
FORWARD LENGTH=709
Length=709

 Score =  676 bits (366),  Expect = 0.0
 Identities = 415/438 (95%), Gaps = 5/438 (1%)
 Strand=Plus/Plus

Query  4    TTTCAAGAATCGGCGGCGGAGTATTCTCGCCGGAAAAATGGGTAAAGCTAGAGGAGTTAA  63
            |||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||
Sbjct  62   TTTCAAGAATCGGCGGCGGAATATTCTCGCCGG-AAAATGGGGAAAGCTAGAGGAGTTAA  120

Query  64   CAGCGGCGGAGGAGAGAGCTCTCTCGGTTATCTTTTTGGTTCCGGCGAGTCTGTTTCCAA  123
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  121  CAGCGGCGGCGGAGAGAGCTCTCTCGGTTATCTTTTTGGTTCCGGCGAGTCTGTTCCCAA  180

Query  124  ACCAAACAAGGCC-ACAGCTAACACCAGCTTTACCACGACCACGACGACCACAACAACCA  182
            |||||||||| || || ||||| ||| | |||||||| |||||||| ||||||||||| |
Sbjct  181  ACCAAACAAGCCCAAC-GCTAAAACCGGTTTTACCACCACCACGACCACCACAACAACAA  239

Query  183  CCGACGGAGCTGGAGGTAGACCCAAGACCACGACCACAACCACAACCACCGGAGATAAAA  242
            | || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct  240  CGGATGGAGCTGGAGGTAGACCCAAGACCACGACCACAACTACAACAACCGGAGATAAAA  299

Query  243  ACAAGACAGAGGAGAACTCGGCTGGTGTGAGAGGAAGTCCTAATAATTACTACAGATCAG  302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  ACAAGACAGAGGAGAACTCGGCTGGTGTGAGAGGAAGTCCTAATAATTACTACAGATCAG  359

Query  303  ATGGACAAAACTGTGGCAACTTCCTCACGGAACGACCATCTACGAAGGTTCATGCTGCAC  362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  360  ATGGACAAAACTGTGGCAACTTCCTCACGGAACGACCATCTACGAAGGTTCATGCTGCAC  419

Query  363  CAGGTGGAGGATCTTCTCTTGG-TTACTTGTTTGGATCTGGTCCATCTGGATCTGACAAA  421
            ||||||||||||||||| |||| ||||||||||||||||||||| | |||||||||||||
Sbjct  420  CAGGTGGAGGATCTTCT-TTGGGTTACTTGTTTGGATCTGGTCCTTGTGGATCTGACAAA  478

Query  422  TGATTTCAATTTCCACGA  439
            ||||||| ||||||||||
Sbjct  479  TGATTTCTATTTCCACGA  496



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25820351558


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5