BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488406
Length=1347
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15610.1 | Symbols: | Proteasome component (PCI) domain pro... 1724 0.0
AT3G02200.2 | Symbols: | Proteasome component (PCI) domain pro... 1153 0.0
> AT5G15610.1 | Symbols: | Proteasome component (PCI) domain protein
| chr5:5079513-5082205 FORWARD LENGTH=1671
Length=1671
Score = 1724 bits (933), Expect = 0.0
Identities = 1058/1118 (95%), Gaps = 9/1118 (1%)
Strand=Plus/Plus
Query 1 AGGGATTTAGGATTAGCGTTAG-GACTCAGT-GAAGCAGAGAATGACGACGATTGTTCCC 58
|||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||
Sbjct 26 AGGGATTTAGGATTAGCGTTAGAGACTCAGTCG-AGCAGAGAATGACGACGATTGTTCCC 84
Query 59 ACCTCCGAAGTAGATCCTTATCTCGCCATTGTTCGGTTCACTTCCCAGCTTGCCTGGGCA 118
|||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 85 ACCTCCGAAGAAGATCCTTACCTCGCCATTGTTCGTTTCACTTCCCAGCTTGCCTGGGCT 144
Query 119 GATGCTGGTCCCGAGGTTGCAGAGCCTGAAGTTTCCAGGCTATGTAGGGAAGCAGAGGAT 178
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 145 GATGCTGGTCCCGAGGTCGCAGAGCCTGAAGTTTCCAGGCTATGTAAGGAAGCAGAGGA- 203
Query 179 GT-TATAATAGATGGGAAGTGGCTGGATTTGGCAACGTTAATGGTAACTTCAGCTGACTT 237
|| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 204 GTCTATAATAAATGGGAAGTGGCTGGATTTGGCAACGTTGATGGTAACTTCAGCTGACTT 263
Query 238 GGTATCATCCAAGATCCCTGAGAAAGATCTTGAGTGTACCTACACCATAATTTGCAGCCT 297
||||||| |||| ||| ||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 264 GGTATCAGCCAAAATCTCTGAGAAAGATCTTGAGTGTACCTACACCATCATTTGCAACCT 323
Query 298 TGTCAAGAATGTG-ACAAGTCCTGAGGAAGTCCTTGAAATTGTGAAAGCTATAGCTTCGA 356
||||||||||| | || ||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 324 TGTCAAGAATGCGAAC-AGTCCTGAGGAAGTCCTTGAAATGGTGAAAGCTATAGCTGCTA 382
Query 357 AGGTTGTTCAACAGCCGAATGACAAAGCTTCATTGCGTTTGAAAATCCTCTTCAGTCTAT 416
||||| ||||||| || || ||||||||||||||||||||||| |||||||||| |||||
Sbjct 383 AGGTTATTCAACAACCAAACGACAAAGCTTCATTGCGTTTGAAGATCCTCTTCAATCTAT 442
Query 417 ATAATCTGGTAGACCACCCAAATGCTCGTTTTCAAGTATACATGAAAGCTCTGGAACTGG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 ATAATCTGGTAGACCACCCAAATGCTCGTTTTCAAGTATACATGAAAGCTCTGGAACTGG 502
Query 477 CTGTAAACGGGAAGGTTACCGAGTATATTGTGCCTTCCTTTAAGAAAATTGACAGCTTCT 536
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 503 CTGTAAACGGGAAGGTTACCGAGTATATTGTACCTTCCTTTAAGAAGATTGACAGCTTCT 562
Query 537 TGAAAGAGTGGAACATTGACATCAAAGATCAGCGCGAAGTATTTCTTGCCATTGCTAAAG 596
|||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||
Sbjct 563 TGAAAGAGTGGAACATTGACATCAAAGATCAGCGGGAACTATTTCTTGCTATTGCTAAAG 622
Query 597 TGCTGAGAGAAAATAAAAGTTTGGCGAAAGAATCCCTTCAGTTTGTGACAAAATATTTGG 656
|||| ||||||||||||||||| |||||||||||||| |||||||||||||| |||||||
Sbjct 623 TGCTTAGAGAAAATAAAAGTTTTGCGAAAGAATCCCTCCAGTTTGTGACAAATTATTTGG 682
Query 657 CAACTTTCTCCAATGAAGATACCCAGGTCCTGAGTGAAGCCAAGGAGGAAGCTGTACGAG 716
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 683 CAACTTTCTCCAATGAAGATACCCAAGTCCTGAGTGAAGCCAAGGAGGAAGCTGTACGAG 742
Query 717 CTGTTATTGAATTTGTCAAGGCTCCCAGTATATTTCAGTGTGATTTATTAGAC-ATGCCA 775
| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 743 CAGTTATTGAATTTGTCAAGGCTCCCAGTATATTTCAGTGTGATTTATTAGACCAT-CCA 801
Query 776 GCCGTTGCACAATTGGAGAAGGATCCTAATAATGCACCAGTTTACCAGCTACTGAAGAtt 835
|| || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 802 GCTGTCGCACAGTTGGAGAAGGATCCTAACAATGCACCAGTTTACCAGCTACTGAAGATT 861
Query 836 ttttttACTCAGAGGCTGGATGCATACATGGAATTCCAAAATGCGAATTCAGGATTTCTG 895
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 TTTCTTACTCAGAGGCTAGATGCATACATGGAATTCCAAAATGCGAATTCAGGATTTCTG 921
Query 896 CAAACCTACGGTCTTGTCGAGGCAGACTGTGTAGCAAAGATGAGATTGTTGTCACTAGTG 955
||||| ||||| |||||||||| ||||||||||||||||||||| |||||||| |||||
Sbjct 922 CAAACATACGGACTTGTCGAGGAAGACTGTGTAGCAAAGATGAGGTTGTTGTCCCTAGTT 981
Query 956 GATTTGGCCTCAGATGAATCTGGCAAAATACCGTATGTCTCGATCAAGAAAACCTTACAG 1015
||||||||||||||||| ||||||||||||||||||| |||||||||||| ||| |||||
Sbjct 982 GATTTGGCCTCAGATGATTCTGGCAAAATACCGTATGCCTCGATCAAGAACACCCTACAG 1041
Query 1016 GTAAATGACGAGGAGGTTGAATTGTGGGTGGTTAAGGCAATAACTGCAAAATTGGTTGAT 1075
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1042 GTAAATGACGAGGAGGTTGAATTGTGGGTGGTTAAGGCAATAACTGCAAAATTGGTTGCT 1101
Query 1076 TGTAAGATGGATCAGATGAACCAAGTTGTAATTGTCAG 1113
||||||||||||||||||||||||||||||||||||||
Sbjct 1102 TGTAAGATGGATCAGATGAACCAAGTTGTAATTGTCAG 1139
Score = 372 bits (201), Expect = 6e-102
Identities = 226/238 (95%), Gaps = 1/238 (0%)
Strand=Plus/Plus
Query 1110 TCAGCCGCTGTGCCGAGCGTGAATTTGGACAAAAGCAATGGCAGTCTCTTCAAACAAAGC 1169
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1223 TCAGCCGCTGTGCCGAGCGTGAATTTGGACAAAAGCAATGGCAGTCTCTTCGAACAAAGC 1282
Query 1170 TTGCAGCTTGGCGGGACAATGTTAGGAATGTAATCAGCACAATAGAAGCGAACAAGGCAA 1229
| |||||||||||||||||||||||||||||||||||||| || ||| |||| |||||||
Sbjct 1283 TAGCAGCTTGGCGGGACAATGTTAGGAATGTAATCAGCACGATCGAATCGAATAAGGCAA 1342
Query 1230 CAGAGGAAGGTACTCAGACATCATCAGCAGCTCAGGGATTGACTGTCCGTTGAAAGATTT 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1343 CAGAGGAAGGTACTCAGACATCATCAGCAGCTCAGGGATTGACTGTCCGTTGAAATATAT 1402
Query 1290 CTCAGAAGAAGAAGCTTCTCAATCTAAAGACTGATTTGATTATTGTCATCTCAAAAGC 1347
||| |||||||||||||||||||||||||| |||| |||| |||||||||||||||||
Sbjct 1403 CTCTGAAGAAGAAGCTTCTCAATCTAAAGAGTGATCTGAT-ATTGTCATCTCAAAAGC 1459
> AT3G02200.2 | Symbols: | Proteasome component (PCI) domain protein
| chr3:406594-409163 FORWARD LENGTH=1596
Length=1596
Score = 1153 bits (624), Expect = 0.0
Identities = 1038/1235 (84%), Gaps = 40/1235 (3%)
Strand=Plus/Plus
Query 41 ATGACGACGATTGTTCCCACCTCCGAAGTAGAT-CCTTATCTCGCCATTGTTCGGTTCAC 99
|||||||||||||||||||||||||||| | || |||| |||||| |||| || |||||
Sbjct 99 ATGACGACGATTGTTCCCACCTCCGAAGAAAATCCCTT-TCTCGCTGTTGTCCGATTCAC 157
Query 100 TTCCCAGCTTGCCTGGGCAGATGCTGGTCCCGAGGTTGCAGAGCCTGAAGTTTCCAGGCT 159
||||||||| |||||||| |||||||||||||||| |||||||| ||| || |||||||
Sbjct 158 TTCCCAGCTCGCCTGGGCCGATGCTGGTCCCGAGGCAGCAGAGCCAGAAATTACCAGGCT 217
Query 160 ATGTAGGGAAGCAGAGGATGT-TATAATAG-ATGGGAAGTGGCTGGATTTGGCAACGTTA 217
|||||||| || ||||| || || ||| | | ||||||||| || ||| | |||||
Sbjct 218 CTGTAGGGAGGCTGAGGA-GTCAATGGTAGCA-GAGAAGTGGCTTGAATTGTCTTCGTTA 275
Query 218 ATGGTAACTTCAGCTGACTTGGTATCATCCAAGATCCCTGAGAAAGATCTTGAGTGTACC 277
||||| ||||||||||| |||||||| || ||||| |||||||||||||||||||||||
Sbjct 276 ATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGATCTTGAGTGTACC 335
Query 278 TACACCATAATTTGCAGCCTTGTCAAGAATGTGACAAGTCCTGAGGAAGTCCTTGAAATT 337
|||||||| ||||||||| |||||||||||| || ||| |||||| |||||||||||||
Sbjct 336 TACACCATCATTTGCAGCATTGTCAAGAATGCGAAAAGCCCTGAGCAAGTCCTTGAAATG 395
Query 338 GTGAAAGCTATAGCTTCGAAGGTTGTTCAACAGCCGAATGACAAAGCTTCA-TTGCGTTT 396
||||||||||||||||| ||||||| |||||| || | ||||||||||||| || |||||
Sbjct 396 GTGAAAGCTATAGCTTCCAAGGTTGCTCAACAACCCAGTGACAAAGCTTCACTT-CGTTT 454
Query 397 GAAAATCCTCTTCAGTCTATATAATCTGGTAGACCACCCAAATGCTCGTTTTCAAGTATA 456
||| |||||||||| ||| ||||| ||||| |||||||| ||||||| |||||||||||
Sbjct 455 GAAGATCCTCTTCAATCTCTATAACCTGGTTGACCACCCGTATGCTCGATTTCAAGTATA 514
Query 457 CATGAAAGCTCTGGA-ACTGGCTGTAAACGGGAAGGTTACCGAGTATATTGTGCCTTCCT 515
|||||||||||| | ||| ||||| | ||||||||||| ||||| || || |||| |
Sbjct 515 CATGAAAGCTCT-TACACTAGCTGTTGATGGGAAGGTTACTGAGTACATAGTTTCTTCTT 573
Query 516 TTAAGAAAATTGACAGC-TTCTTGAAAGAGTGGAACATTGACATCAAAGATCAGCGCGAA 574
||||||| || || | | ||| ||||||||||||| |||||||| ||||||||| | |||
Sbjct 574 TTAAGAAGATCGATAACTTTC-TGAAAGAGTGGAATATTGACATTAAAGATCAGAGGGAA 632
Query 575 GTATTTCTTGCCATTGCTAAAGTGCTGAGAGAAAATAAAAGTTTGGCGAAAGAATCCCTT 634
| ||||||||||||||||| ||||||| |||||| ||||| |||| ||| |||||||||
Sbjct 633 CTCTTTCTTGCCATTGCTAATGTGCTGAAAGAAAACAAAAGCTTGGTGAATGAATCCCTT 692
Query 635 CAGTT-TGTGACAAAATATTTGGCAACTTTCTCCAATGAAGATACCCAGGTCCT-GAGTG 692
|||| | |||| || || | ||||||||||||||||| ||| | |||||||| || ||
Sbjct 693 AAGTTCT-TGACGAAGTACCTAGCAACTTTCTCCAATGAGGATGCTCAGGTCCTGGA-TG 750
Query 693 AAGCCAAGGAGGAAGCTGTACGAGCTGTTATTGAATTTGTCAAGGCTCCCAGTATATTT- 751
||||||||||||| ||||| || || ||||| ||||||||||| ||| ||||||| |||
Sbjct 751 AAGCCAAGGAGGAGGCTGTGCGTGCAGTTATCGAATTTGTCAAAGCTTCCAGTAT-TTTC 809
Query 752 CAGTGTGATTTATTAGACATGCCAGCCGTTGCACAATTGGAGAAGGATCCT-AATAATGC 810
|||||||||||||| ||| |||||||||| ||||||||||| |||||| || ||| ||||
Sbjct 810 CAGTGTGATTTATTGGACTTGCCAGCCGTAGCACAATTGGAAAAGGATGCTAAAT-ATGC 868
Query 811 ACCAGTTTACCAGCTACTGAAGAttttttttACTCAGAGGCTGGATGCATACATGGAATT 870
||| |||||||| || |||||||||||| ||||||||||| | |||| |||| ||||||
Sbjct 869 ACCTGTTTACCAACTTCTGAAGATTTTTCTTACTCAGAGGTTAAATGCCTACACGGAATT 928
Query 871 CCAAAATGCGAATTCAGGATTTCTGCAAACCTACGGTCTTGT-CGAGGCAGACTGTG-TA 928
||||||||| ||||| ||||||||||||| ||| || ||| | | | | ||| |||| ||
Sbjct 929 CCAAAATGCAAATTCGGGATTTCTGCAAAGCTATGGACTT-TCCAATGAAGATTGTGTTA 987
Query 929 GCAAAGATGAGATTGTTGTCACTAGTGGATTTGGCCTCAGATGAATCTGGCAAAATACCG 988
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 -CGAAGATGAGGTTGTTGTCACTAGTGGATTTGGCCTCAGATGAATCTGGCAAAATACCT 1046
Query 989 TATGTCTCGATCAA-GAAAAC-CTTACAGGTAAATGA-CGAGGAGGTTGAATTGTGGGTG 1045
|| |||||| || || | | ||| ||||||||||| | |||| || || || ||| |
Sbjct 1047 TACACCTCGATTAAAGACA-CTCTT-CAGGTAAATGAAC-AGGATGTCGAGTTATGGATC 1103
Query 1046 GTTAAGGCAATAACTGCAAAATTGGTTGATTGTAAGATGGATCAGATGAACCAAGTTGTA 1105
|| |||||||||||||||||| || |||| ||||||||||||||||||||||||||| ||
Sbjct 1104 GTGAAGGCAATAACTGCAAAACTGATTGAGTGTAAGATGGATCAGATGAACCAAGTTTTA 1163
Query 1106 ATTGTCAGCCGCTGTGCCGAGCGTGAATTTGG-ACAAAAGCAATGGCAGTCTCTTCAAAC 1164
||||||||||||| | |||| ||||||||||| ||||| ||||||||| ||||| | |||
Sbjct 1164 ATTGTCAGCCGCTCTTCCGAACGTGAATTTGGGACAAA-GCAATGGCAATCTCTCCGAAC 1222
Query 1165 AAAGCTTGC-AGCTTGGCGGGACAATGTTAGGAATGTAATCAGCAC-A--ATAGAAGCGA 1220
||||||||| | ||||| |||||| || || ||| ||| || | || ||| |||
Sbjct 1223 AAAGCTTGCGA-CTTGGAAGGACAACATTTC-AA-GTA-TCATAACTACCATCGAATCGA 1278
Query 1221 ACAAGGCAACAGAGGAAGGTACTCAGACATCATCA 1255
| |||| ||| ||||||||| ||||| ||||||||
Sbjct 1279 ATAAGGTAACGGAGGAAGGTTCTCAGGCATCATCA 1313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66314919945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5