BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488408
Length=1553
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15630.1 | Symbols: COBL4, IRX6 | COBRA-like extracellular g... 2355 0.0
> AT5G15630.1 | Symbols: COBL4, IRX6 | COBRA-like extracellular
glycosyl-phosphatidyl inositol-anchored protein family | chr5:5084704-5086792
FORWARD LENGTH=1681
Length=1681
Score = 2355 bits (1275), Expect = 0.0
Identities = 1436/1510 (95%), Gaps = 26/1510 (2%)
Strand=Plus/Plus
Query 1 TTCAAATTCCTGAAGAAGAATAAA--CTGAGGTTAAACACTGTACCT-GGAATCAATATC 57
|||||||||||||||||||| ||| |||||||||||||||| |||| ||||||||| ||
Sbjct 60 TTCAAATTCCTGAAGAAGAA-AAAGCCTGAGGTTAAACACTGCACCTGGGAATCAATTTC 118
Query 58 CTTAGAtcttt-cttcaaaagatgaggctcttcttcagcttctgcttcttcttcttcatg 116
|||| |||||| | |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 119 CTTAAATCTTTAC-TCAAAAGATGAGGCTCCTCTTCAGCTTCTGCTTCTTCTTCTTCATG 177
Query 117 atcatcttTAGCGCAACTGCTTATGATCCATTAGATCCTAGTGGTAACATTACAATCAAA 176
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ATCATCTTTACCGCAACTGCTTATGATCCATTAGATCCTAGTGGTAACATTACAATCAAA 237
Query 177 TGGGATATCATGTCCTGGACAGCAGATGACTATGTGGCTACGGTAACTATGAACAACTTC 236
|||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 238 TGGGATATTATGTCCTGGACGGCAGATGGCTATGTGGCTACGGTAACTATGAACAACTTC 297
Query 237 CAAATCTACCGGCACATTCAAAATCCAGGTTGGACATTAGGTTGGACATGGGCAAAGAAA 296
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 298 CAAATCTACCGGCACATACAAAACCCTGGTTGGACATTAGGTTGGACATGGGCAAAGAAA 357
Query 297 GAGGTGATTTGGTCAATGGTTGGTGCACAAACAACAGAACAAGGAGATTGTTCCAAGTTC 356
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 358 GAGGTGATTTGGTCAATGGTTGGTGCACAAACAACAGAACAAGGAGACTGTTCCAAGTTT 417
Query 357 AAGGGAAATGTACCTCACTGCTGTAAGAAAACCCCGACGGTTGTTGATCTCTTGCCAGGT 416
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 418 AAGGGAAATGTACCTCATTGCTGTAAGAAAACCCCTACAGTTGTTGATCTCTTGCCAGGT 477
Query 417 GTGCCTTATAATCAACAGTTCTCAAACTGTTGCAAAGGCGGTGTAATTGGAGCTTGGGGT 476
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 478 GTGCCTTATAATCAACAGTTCTCAAACTGTTGCAAAGGAGGTGTAATTGGAGCTTGGGGT 537
Query 477 CAAGATCCATCAGCCGCAGTATCCCAGTTTCAGGTTAGTGCTGGTTTGGCTGGAACTACA 536
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 538 CAAGATCCATCAGCCGCTGTATCCCAGTTTCAGGTTAGTGCTGGTTTAGCTGGAACTACA 597
Query 537 AACAAGACTGTCAAGCTTCCTAAGAACTTCACTTTGCTTGGTCCCGGGCCTGGTTACACT 596
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 598 AACAAGACTGTCAAGCTTCCTAAGAACTTCACTTTGCTTGGTCCCGGCCCTGGTTACACT 657
Query 597 TGCGGTCCAGCCAAAATCGTGCCCTCTACCGTTTTTCTCACAACTGATAAACGGCGAAAA 656
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 658 TGCGGTCCTGCCAAAATCGTGCCCTCTACCGTTTTTCTCACAACTGACAAACGGCGAAAA 717
Query 657 ACACAAGCTTTGATGACATGGAATGTTACCTGCACATACTCACAGTTTCTAGCCAGAAAG 716
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 718 ACACAAGCTTTGATGACATGGAATGTTACCTGCACATACTCACAGTTTTTAGCAAGAAAG 777
Query 717 CATCCAAGCTGTTGTGTCTCCTTTTCTTCTTTCTACAACGACACCATAACTCCTTGCCCG 776
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 778 CATCCAAGCTGTTGTGTCTCCTTCTCTTCTTTCTACAACGACACCATAACTCCTTGCCCG 837
Query 777 TCTTGTGCCTGTGGCTGCGAGAACAAAAAGGGCTGCGTCAAGGCTGATTCTAAGATTCTA 836
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 838 TCTTGTGCCTGTGGCTGCGAGAACAAAAAGAGCTGCGTCAAGGCTGATTCTAAGATTCTA 897
Query 837 ACCATGAAAGGTCTCAACACACCGAAGAAA-GACAACACTCCATTGCTGCAATGCACACA 895
|||| |||||||||||||||||| || ||| ||||||||||| ||| |||||||||||||
Sbjct 898 ACCAAGAAAGGTCTCAACACACC-AAAAAAGGACAACACTCCTTTGTTGCAATGCACACA 956
Query 896 TCACATGTGCCCTGTTAGAGTCCACTGGCACGTTAAAACTAACTACAAAGACTATTGGCG 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TCACATGTGCCCTGTTAGAGTCCACTGGCACGTTAAAACTAACTACAAAGACTATTGGCG 1016
Query 956 AGTGAAGATAGCGATAACAAATTTCAATTACCGGATGAATCATACGCTCTGGACTTTAGC 1015
|||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1017 AGTGAAGATAGCAATCACAAATTTCAATTACCGGATGAATCATACACTCTGGACTTTAGC 1076
Query 1016 AATTCAGCATCCAAATCTCAACAATGTGACTCAAGTTTTCAGCTTTGACTACAAACCAGT 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 AATTCAGCATCCAAATCTCAACAATGTGACTCAAGTTTTCAGCTTTGACTACAAACCAGT 1136
Query 1076 CTCTCCTTATGGATCCATAAATGATACTGGAATGTTCTATGGAACGAAGTTTTACAATGA 1135
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 CTCTCCTTACGGATCCATAAATGATACTGGAATGTTCTATGGAACGAAGTTTTACAATGA 1196
Query 1136 TCTATTAATGGAAGCTGGACCTTCAGGGAATGTACAATCAGAGGTTTTGCTACAGAAAGA 1195
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1197 TTTATTAATGGAAGCTGGACCTTCAGGGAATGTGCAATCAGAGGTTTTGCTACAGAAAGA 1256
Query 1196 TCAAAAGACTTTCACTTTGAAGCAAGGTTGGGCTTTTCCAAGAAAAGTTTACTTTAATGG 1255
|||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1257 TCAAAAGACTTTTACTTTCAAGCAAGGTTGGGCTTTTCCTAGAAAAGTTTACTTTAATGG 1316
Query 1256 TGATGAATGTATGTTACCTCCACCAGATTCATACCCTTTTCTACCAAACTCTGCACAAGG 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TGATGAATGTATGTTACCTCCACCAGATTCATACCCTTTTCTACCAAACTCTGCACAAGG 1376
Query 1316 AAACTTTGCTTC-TATGTCACTCAACATTCTTCTTCTTCTTTTATTCATCTCAATCTGGT 1374
||||||||||| | | ||||||| |||||||||||| || |||||||||||| ||||
Sbjct 1377 GAACTTTGCTTCGT-TCTCACTCACCATTCTTCTTCTCCT---ATTCATCTCAATATGGT 1432
Query 1375 GATTTGATCTGATCCTTCCGGGTTTTAAA-CACTGAACCAGAACTGTTTTTTGTAAACTC 1433
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1433 GATTTGATCTGATCCTTCTGGGTTTTAAAACACTGAACCAGAACTGTTTTTTGTAAACTC 1492
Query 1434 ATTGCAAAGATTGTAAAA------------TTTTGTGAGAGGTAATGATTAGAGATGTGT 1481
|||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1493 ATTGCAAAGATTGTAAAAGAAAAAAAGGAGTTTTGTGAGAGGAAATGATTAGAGATGTGC 1552
Query 1482 AAGGGTTTTT 1491
|||| |||||
Sbjct 1553 AAGGCTTTTT 1562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76656232215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5