BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488413
Length=1868
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15710.1 | Symbols: | Galactose oxidase/kelch repeat superf... 2994 0.0
> AT5G15710.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:5122492-5124375 FORWARD LENGTH=1884
Length=1884
Score = 2994 bits (1621), Expect = 0.0
Identities = 1789/1869 (96%), Gaps = 15/1869 (1%)
Strand=Plus/Plus
Query 1 AAAGGAAGAAGCTTGTTGCATAATATCTTGAGGTAAATTACTAGTTACTGATCCAAAGTT 60
|||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 26 AAAGGACGAAGCTTGTTGCATAATATGTTGAGGTAAATTACTAATTACTGATCCAAAGTT 85
Query 61 AGAATCTTTGCTCTAACTCCAGGCTAGCTGATTGCGTAGCTTCCGATTGATTTCTACCTG 120
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 86 CGAATCTTTGCTCCAACTCCAGGCTAGCTGATTGCGTAGCTTCCGATTGATTTCTACCTG 145
Query 121 AGTTTTGAGTTCCTTTGTGGTCACTTTGTTGTTCTTCTGCTGGGTTTTTTGTTCGAGGAT 180
|||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||
Sbjct 146 AGTTTTGAGTTCCTTTGTGGCCACTTCGTTGTTCTTCTGCTGGGTTTTTTGCTCGAGGAT 205
Query 181 CTGATACTTCTGTGTGGTCGATGATCGAGTTATCTTCCTTGGGTTTTGGGGATCTAAGTC 240
||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 206 CTGATACTTCTGTTTGGTCGATGATCGAGTGATCTTCGTTGGGTTTTGGGGATCTAAGTC 265
Query 241 ATCTTGAGGTTATATAGCTAATGGTTTGGATTTGAGTTTGAATGGAGCGTTTGGGATTTT 300
|| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 266 GTC-------TATATAGCTAATGGTTTGGATTTGAGTTTGAATGGAGCGTTTAGGATTTT 318
Query 301 GGGGATTGCTAATGGGTAGTGTGGAAAAGTCATTGGATTCTGGAAATTCGGTGGCTTGCT 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 319 GGGGATTGCTAATGGGTAGTGTGGAAAAGTCATTGGATTCTGGAAATTCGTTGGCTTGCT 378
Query 361 CTGCATCTGCTAAGAATGGAGACGAAGATAGTAGTAGTAGTACTTCATCGAAGCAAGTTT 420
||||||||||||||||||||||| || || || |||||||||||||||||||||||||
Sbjct 379 CTGCATCTGCTAAGAATGGAGAC---GA-AG-AG-AGTAGTACTTCATCGAAGCAAGTTT 432
Query 421 CACCATTGAAGGGTTCTGGGTCGAGAAATACTAGTCCTTTAGGTCGAGTTGGGTCGAGAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 CACCATTGAAGGGTTCTGGGTCGAGAAATACTAGTCCTTTAGGTCGAGTTGGGTCGAGAA 492
Query 481 ACACGAGTCCTTCTAGGCAGAAAGTGGTCAAGACGAAGCCTCGTGGTTTAGAGGAAGAAA 540
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 493 ACACGAGTCCTTCTAGGCAGAAAGTGGTGAAGACGAAGCCTCGTGGTCTAGAGGAAGAAA 552
Query 541 CAGTTGCTTCATTTGGTAAACCAGTTGTTGCTGATGTGCAGATGGAGGATGGTATATGGG 600
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 553 CAGTTGCTTCATTTGGTAAACAAGTTGTTGCTGATGTGCAGATGGAAGATGGTATATGGG 612
Query 601 CAATGCTTCCAGAGGATTTGCTCAACGAGATTTTAGCTAGGGTTCCACCGTTTATGATAT 660
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 613 CAATGCTTCCAGAGGATTTGCTCAATGAGATTTTAGCTAGGGTTCCACCGTTTATGATAT 672
Query 661 TTCGAATCCGGTCTGTTTGTAAAAAATGGAACTTGATTCTTCAGGATAATAGTTTTCTCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 TTCGAATCCGGTCTGTTTGTAAAAAATGGAACTTGATTCTTCAGGATAATAGTTTTCTCA 732
Query 721 AGTTTCACTCAAATGTGTCATCTCATGGGCCTTGTCTTCTCACTTTTTGGAAGAACTCAC 780
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 733 AGTTTCACTCAAATGTGTCATCTCATGGGCCTTGTCTTCTCACTTTCTGGAAGAACTCGC 792
Query 781 CGCAGATTCCGCAATGCTCGGTTTTTAGTTTGCCATTGAAGACATGGTACAAAATTCCAT 840
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 793 CGCAGATTCCGCAATGCTCAGTTTTTAGTTTGCCATTGAAGACATGGTACAAAATTCCAT 852
Query 841 TCACGTTTTTGCCTCCATGGGCTTTTTGGTTGGTTGGTTCTTCAGGTGGTCTCGTTTGCT 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 853 TCACGTTTTTGCCTCCATGGGCTTTTTGGTTGGTTGGTTCTTCAGGTGGTCTCGTTTGTT 912
Query 901 TTTCAGGTATGGATGGTCTAACTTTCAGAACTTTAGTATGCAATCCTCTGATGCAGAGTT 960
|||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 TTTCGGGTCTTGATGGTCTAACTTTCAGAACTTTAGTATGCAATCCTCTGATGCAGAGTT 972
Query 961 GGAGGACTCTACCTAGTATGCACTATAACCAACAAAGGCAATTGATTATGGTCGTAGATC 1020
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 973 GGAGGACTCTACCGAGTATGCACTATAACCAACAAAGGCAATTGATTATGGTCGTGGATC 1032
Query 1021 GCTCAGAAAAATCGTTCAAAGTTATAGCCACAAGTGATATTTATGGTGATAAGTCAGTTC 1080
||||||| |||||||||||||| ||||||||||||||||| || || ||||||||| |||
Sbjct 1033 GCTCAGACAAATCGTTCAAAGTCATAGCCACAAGTGATATATACGGGGATAAGTCACTTC 1092
Query 1081 CTACCGAAGTGTATGATTCCAAAACTGATAAATGGTCCTTACATCAGATAATGCCTGCGG 1140
|||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1093 CTACTGAAGTTTATGATTCCAAAACTGACAAATGGTCCTTACATCAGATAATGCCTGCGG 1152
Query 1141 TGAACTTATGCTCTTCGAAAATGGCTTATTGTGATTCCCGGTTATATCTAGAGACTCTCT 1200
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1153 TGAACTTATGCTCCTCGAAAATGGCTTATTGTGATTCCCGGTTATATCTAGAAACTCTTT 1212
Query 1201 CGCCTCTTGGGTTGATGATGTATCGGCTTGATACAGGGCAATGGGAACACATTCCAGCTA 1260
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1213 CGCCTCTTGGTTTGATGATGTATCGGCTTGATTCAGGGCAATGGGAACACATTCCAGCTA 1272
Query 1261 AATTCCCGAGATCTTTATTGGATGGTTACTTAGTTGCTGGAACTCAGAAGAGATTGTTTC 1320
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 AATTCCCGAGATCTTTGTTGGATGGTTACTTAGTTGCTGGAACTCAGAAGAGATTGTTTC 1332
Query 1321 TCGTAGGAAGGATTGGCCTCTATAGTACCCTCCAAAGCATGAGGATATGGGAGCTTGATC 1380
|||| ||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 1333 TCGTGGGAAGGATTGGCCTCTACAGTACTCTCCAAAGCATGAGAATATGGGAGCTTGATC 1392
Query 1381 ACACAAAGGTTTCTTGGGTAGAGATAAGTAGAATGCCACCAAAGTACTTCCGAGCACTTC 1440
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 ACACAAAGGTCTCTTGGGTAGAGATAAGTAGAATGCCACCAAAGTACTTCCGAGCACTTC 1452
Query 1441 TGAGACTTTCGGCGGAGAGGTTTGAGTGTTTTGGCCAAGATAATTTGATCTGCTTTACGT 1500
||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1453 TGAGACTTTCGGCTGAGAGGTTCGAGTGTTTTGGACAAGATAATTTGATCTGCTTTACGT 1512
Query 1501 CTTGGAATCAAGGAAAAGGTCTTCTATACAATGTGGATAAGAAGATTTGGTCTTGGATTT 1560
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1513 CTTGGAATCAAGGAAAAGGTCTTCTATACAATGTGGATAAGAAAATTTGGTCTTGGATTT 1572
Query 1561 CCGGTTGTGCTCTTCAGTCATGCAACAGCCAAGTGTGCTTTTATGAGCCAAGATTTGATG 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 CCGGTTGTGCTCTTCAGTCATGCAACAGCCAAGTGTGCTTTTATGAGCCAAGATTTGATG 1632
Query 1621 CATCTGTCCACTGAACAATAAGTAATCGTCTGTCTCACAACATTCTTGAAAACTTACAAG 1680
||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1633 CATCTGTCCTCTGAACAATAAGTTATCGTCTGTCTCACATCATTCTTGAAAACTTACAAG 1692
Query 1681 TTCGCTAGCAAAACATGTCAGAGATATGAAATCGAAA-AGCCTTTGGTGTGTACCTTCAG 1739
||||| |||||||||||||||| |||||||||| ||| || |||| |||||||||||||
Sbjct 1693 TTCGCCAGCAAAACATGTCAGAAATATGAAATC-AAAGAGGGTTTGATGTGTACCTTCAG 1751
Query 1740 TGTTAATGAAGACCTCGTCAGCAATGATATGCTTCACCAATGATTAACAATATCGGGGAG 1799
||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1752 TGTTAATGAAGACCTGGTCAGCAATGATATGCTTCACCAATGGTTAACAATATCGAGGAG 1811
Query 1800 AAAAACTGTAAGATAAACTTGTTTCTAGCTTTCGGTAAATTAGCATTCACTGGATATGAA 1859
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1812 AAAAACTGTAAGATAAACTTGTTTCTAGCTTTCTGTAAATTAGCATTCACTCGATATGAA 1871
Query 1860 AACTTTCTC 1868
|||||||||
Sbjct 1872 AACTTTCTC 1880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92469403890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5