BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488415
Length=471
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15725.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 621 2e-177
> AT5G15725.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: root; Has
30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:5127404-5128338 FORWARD LENGTH=486
Length=486
Score = 621 bits (336), Expect = 2e-177
Identities = 430/473 (91%), Gaps = 16/473 (3%)
Strand=Plus/Plus
Query 1 GTCAAGTGTTGAAGAACTGATATATACTTTACGAAAGCAAACGCAAGTACTTTTAAGTAC 60
||||||| |||||||||||||| ||||||||| ||||| ||||||| ||||||| |||||
Sbjct 4 GTCAAGTATTGAAGAACTGATAAATACTTTACAAAAGC-AACGCAACTACTTTTCAGTAC 62
Query 61 AAACGACCAAAGATATAATATGAAGAAGACAATTTTGAAGTTAATGACCCTCGTTTTAGG 120
|||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 63 AAACGACCAAGGATATAATATGAAGAAGACGAGTTTGAAGTTAATGACCCTCGTTTTAGG 122
Query 121 GTTTTTCTTTC-TCATTTATCTTCTTCAAGGGCCTCGAGGCGGGTCGAAAAATGGAGATC 179
||||| ||| | ||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 123 GTTTTGCTT-CGTCATTTATCTTCTTCAAGGGCCTCGAGGCGGTTCGAGAAATGGAGATC 181
Query 180 TCTTGATAGCACGGAAGTTAATAGCTCTGGAACCGATTGAAACAAAAAATGTAGCGAGAT 239
||||||||||||| ||||| ||| ||||||||||||||||||||||||||| ||||||||
Sbjct 182 TCTTGATAGCACGAAAGTTGATATCTCTGGAACCGATTGAAACAAAAAATGCAGCGAGAT 241
Query 240 CGTTGGAAGATTCAATATCGACAGATTTAGAGAGA-GAGGTTGATCATCTGATGCAGCAC 298
||||| ||||||||||||| |||||||||||| || |||||||||| ||||||| |||||
Sbjct 242 CGTTGAAAGATTCAATATCAACAGATTTAGAG-GAAGAGGTTGATCGTCTGATGGAGCAC 300
Query 299 GAATATCCTTCACCGGTAAAGCCGAGGAAAAGAACTCCAGTTCACAATGGCGTGCCTATT 358
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 301 GAATATCCTTCACCAGTAAAGCCGAGGAAAAGAACTCCGGTTCACAATGGCGTGCGTA-- 358
Query 359 AATACTGGTCACTAATTGACCCCCTTCTTGTTTTATTGTTCCTTCAATTAGTAGTTTAAT 418
| | | | |||||||||||||| || ||| |||||||| ||||||||||||||||||
Sbjct 359 A-T-C-G-TCACTAATTGACCC--TT---GTTCTATTGTTCTTTCAATTAGTAGTTTAAT 409
Query 419 AAGTTTGTTAACATCATAAAATGGACGTATCATGTAATGCTGAATATTAGTAT 471
||||||| ||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 410 AAGTTTGGTAAAATCATAAAATGGACGTATCCTGTAATGCTGAATATTAGTAT 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22404429562
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5