BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488419
Length=818
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15750.1 | Symbols: | Alpha-L RNA-binding motif/Ribosomal p... 1251 0.0
> AT5G15750.1 | Symbols: | Alpha-L RNA-binding motif/Ribosomal
protein S4 family protein | chr5:5141103-5142866 FORWARD LENGTH=901
Length=901
Score = 1251 bits (677), Expect = 0.0
Identities = 776/823 (94%), Gaps = 9/823 (1%)
Strand=Plus/Plus
Query 1 GGACCGTCGGATTTATCTGACTTCTTCTCCTTCAATTAGGGTTTCTGAATTGCT--TCCT 58
|||||||||||||||||||||||| |||||||| ||||||||||||||||| || ||||
Sbjct 3 GGACCGTCGGATTTATCTGACTTCCTCTCCTTCGATTAGGGTTTCTGAATTACTACTCCT 62
Query 59 CTGCCGATTAGGGTTTTAGCGTCTCTAGCATTTTCTTTCAGCTCAAACCCAAAAACCTCA 118
||||| |||||||||| ||| |||| |||||||||||||||||||||||||| |||||||
Sbjct 63 CTGCCAATTAGGGTTTAAGCCTCTCCAGCATTTTCTTTCAGCTCAAACCCAAGAACCTCA 122
Query 119 TCGCCGAGTATTTCTTCATCGTTACTCTACCCCGCGCCGATTAATCTCTCTCAGAACCGT 178
||||||| |||||||||||| |||||||| |||||||||||||||||||||||| |||||
Sbjct 123 TCGCCGATTATTTCTTCATCCTTACTCTATCCCGCGCCGATTAATCTCTCTCAGTACCGT 182
Query 179 CCCAGATGAGGAAGCTCAAGTATCACGAGAAGAAGCTTATAAAGAAAGTAAATTTCTTAG 238
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 CCGAGATGAGAAAGCTCAAGTATCACGAGAAGAAGCTTATAAAGAAAGTAAATTTCTTAG 242
Query 239 AATGGAAAAGAGAAGATAACCATCGGGAAAACGAGATTACGTATCGTTACCACATGGGCT 298
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 243 AATGGAAAAGAGAAGGTAACCATCGGGAAAACGAGATTACGTATCGATACCACATGGGCT 302
Query 299 CTCGTGATGATTACAAAAAGTATTCAGGATTGTGTAGGATGGCGCAGAAACTGACGAATA 358
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 303 CTCGTGATGATTACAAAAAGTATTCAGGATTGTGTAGGATGGTGCAGAAACTGACGAATA 362
Query 359 TATTGAAACAAATGGATCCCGCAGATCCTTTTCGTATTCAGATGACTGATATGCTTTTGG 418
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 363 TAATGAAACAAATGGATCCAGCAGATCCTTTTCGTATTCAGATGACTGATATGCTTTTGG 422
Query 419 AGAAGCTATATAACATGGGTGTTATACCGACTAGGAAAAGCTTGGCTTTAACTGAGCGGT 478
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 423 AGAAGCTATATAACATGGGTGTTATACCGACTAGGAAAAGCTTGACTCTAACTGAGCGGT 482
Query 479 TATCAGTTTCATCCTTCTGTAGGCGTAGGCTATCGACTGTACTGGTTCACCTGAAGTTTG 538
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 483 TATCAGTTTCATCCTTCTGTAGGCGTAGGCTATCTACTGTGCTGGTTCACCTGAAGTTTG 542
Query 539 CAGAGCACAACAAAGAAGCTGTGACATACATAGAGCAAGGACACATTCGTGTAGGACCAG 598
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 543 CAGAGCACCACAAAGAAGCTGTGACATACATAGAGCAAGGACACGTTCGTGTAGGACCAG 602
Query 599 AAACAATTACTGATCCAGCTTTCTTAGTAACTCGGAACATGGAAGATTTCATCACTTGGG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 AAACAATTACTGATCCAGCTTTCTTAGTAACTCGGAACATGGAAGATTTCATCACTTGGG 662
Query 659 TTGATTCTTCCAAGATTAAACGAAAGGTTCTTCAGTACAATGACAAATTGGATGATTATG 718
||||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 663 TTGATTCATCCAAGATTAAACGAAAGGTTCTTGAGTACAATGACACATTGGATGATTATG 722
Query 719 ACATGATTGCTTAACTTTGAGGAGGTTTTaaaaaaaaGACTGATGTCTTGTAATAGCTAT 778
||||| ||||||| ||||||||| ||| |||||| ||||||||| |||||| ||| |
Sbjct 723 ACATGCTTGCTTAGCTTTGAGGAAGTT--AAAAAA--GACTGATGTTTTGTAAAAGCCAA 778
Query 779 GAAAGGTTCAGTGCTACTG-T-T-GCAGGGTTTGTTTGGATTT 818
||||||||| ||||||| | | |||||||||||||||||||
Sbjct 779 AAAAGGTTCACTGCTACTACTATTGCAGGGTTTGTTTGGATTT 821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39835678571
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5