BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488423
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15790.1 | Symbols: | RING/U-box superfamily protein | chr5... 1718 0.0
AT3G02290.1 | Symbols: | RING/U-box superfamily protein | chr3... 477 1e-133
AT5G38895.3 | Symbols: | RING/U-box superfamily protein | chr5... 159 5e-38
> AT5G15790.1 | Symbols: | RING/U-box superfamily protein | chr5:5148744-5151433
FORWARD LENGTH=1534
Length=1534
Score = 1718 bits (930), Expect = 0.0
Identities = 1234/1371 (90%), Gaps = 59/1371 (4%)
Strand=Plus/Plus
Query 1 AGCAACAACGCCCACCCACTTTCACACCAACTTCATCACACAACT-CTCCTCCTTCACTT 59
||||||||||||||||||||||||||||||||| | ||||| ||| ||||||||||||||
Sbjct 1 AGCAACAACGCCCACCCACTTTCACACCAACTTGAACACACTACTCCTCCTCCTTCACTT 60
Query 60 TTTCCTTGAATCTCTCTTCTCGCTGACGAATT-AACAATAAAGAAC-CT-TCTCTTTTTT 116
||||||| ||||||||||||||||||||| || | ||| || | | || ||||||| ||
Sbjct 61 TTTCCTTCAATCTCTCTTCTCGCTGACGACTTGGA-AAT-AA-ATCTCTCTCTCTTTCTT 117
Query 117 CCGTCGAGTCCGATCAAAATCGAAAACCCGTTTAGTTCTTCATCAAAAGGTGAAATTTGA 176
| |||||||||||||||||| |||||||| || ||||| || |||||||||||||||||
Sbjct 118 CGGTCGAGTCCGATCAAAATTGAAAACCCATTGAGTTCCTCGCCAAAAGGTGAAATTTGA 177
Query 177 GAGAATGAAT--------GAAGCAGATTGTTGGTGAAATGTTTGGAGACTTTCTGTAGAT 228
|||||||||| ||||| |||||||||||||||||||||||| |||||||| ||
Sbjct 178 GAGAATGAATCAACGAGAGAAGCTGATTGTTGGTGAAATGTTTGGAGAGTTTCTGTAAAT 237
Query 229 CGAAACCTCTGATTTAGTATTCCTAGAGAAGGTTAAAGGAGTTTCCTAAAAGTTTCAAAT 288
|| |||| ||||| | ||| ||| ||||||||||||||||||||| ||| || |
Sbjct 238 AGACGCCTCGGATTTGGCATTGTTAGTGAAGGTTAAAGGAGTTTCCTAGAAG-TT----T 292
Query 289 CAAAGCAATTTTGACTCCAAGTTCTTGA---GT------TA---GAATTAACATTTCAAG 336
|||||||| |||| |||||||||||||| | || ||| ||||||||||||
Sbjct 293 CAAAGCAA-TTTGCCTCCAAGTTCTTGACTTATAAAACATATTGGAACTAACATTTCAAG 351
Query 337 AAAGAAGAGAAGGAGATGGGCTGTGTTTCTTCTTGCTTTCGGGTCGAAGACTTTGAGGAT 396
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 352 AAAGAAGAGAAGGAGATGGGCTGTGTTTCTTCTTGCTTTGGGGTCGATGACTTTGAGGAT 411
Query 397 TACCCGAATCCAAGTAGTTCTTCTGTTAACAGAACCTGCCCATGCCCGAGATGTCTCATT 456
||||| ||||||||||| |||||||||||||| ||||||||||||||||||||| ||
Sbjct 412 TACCCCAATCCAAGTAG---TTCTGTTAACAGAAGCTGCCCATGCCCGAGATGTCTTGTT 468
Query 457 AATAACTTCCTTAACCTGTATATCTCTTTATTCAGAAGAGGCGAAACCCGCTCTCTCCCG 516
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 AACAACTTCCTTAACCTGTATATCTCTTTATTCAGAAGAGGCGAAACCCGCTCTCTCCCA 528
Query 517 TCCTCTTTACAGGCTACTAATGTATCAATAGCTTCATCTACTTCGTATGATAACTTTATG 576
||||| |||||||||||||||||||| |||||| |||| |||||||||||||||||||||
Sbjct 529 TCCTCCTTACAGGCTACTAATGTATCGATAGCTACATCAACTTCGTATGATAACTTTATG 588
Query 577 TCTAATACATTCCATTCTACTCCAAGGCCTCTGCCTTATGATACTGATCCAAGATACTTC 636
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 589 TCTAATACATTCCATTCTACTCCAAGGCCTCTGCCTTATGACGCTGATCCAAGATACTTC 648
Query 637 CGGTCAAGGCGTGATTCCCTTGTCTCAAGACGCGATAAGGGTTCAAGTCATTCTCATGAG 696
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 649 CGGTCAAGGCGTGATTCGCTTGTTTCTAGACGCGATAAGGGTTCAAGTCATTCTCATGAG 708
Query 697 GAAGCTGAGCCCTTAAGAAGCGATGCTGATGTGGATTCTGAGTCTTTCTCAGTGGAAGGA 756
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 709 GAAGCTGAGCCCTTAAGAAGTGATGCTGATGTGGATTCTGAGTCTTTCTCAGTGGAAGGA 768
Query 757 AGCAAATGGACTAATAAGCTTATTATCTCTGGTGAAGATTCCAAAGAAGAGTTTTCTAAA 816
||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 769 AGCAAATGGGCTAACAAGCTTATTATCTCTGGTGAAGATTCCAAAGAAGAGTTCTCTAGA 828
Query 817 TCCTCTCGGAGGATTCTTCAGTCAAGGACAATGGCTACTGGTAATGAAGGTGTGTATATA 876
||||||||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||
Sbjct 829 TCCTCTCGGAGGATTCTTCAGTCAAGGACAATGTCTACTAGTAACGAAGGCCTGTATATA 888
Query 877 ACTTCTGATGATGAAGATGTCTGTCCAACGTGTCTTGAAGAATACACATCAGAGAACCCG 936
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 889 ACATCTGATGATGAAGATGTCTGTCCAACGTGTCTTGAAGAATACATATCAGAGAACCCG 948
Query 937 AAGATTGTTACAAATTGTTCTCACCATTTCCACCTCAGTTGCATTTATGAATGGATGGAG 996
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 949 AAGATTGTTACAAAGTGTTCTCACCATTTCCACCTCAGTTGCATTTATGAATGGATGGAG 1008
Query 997 AGAAGTGAAAACTGCCCTGTTTGTGGAAAGGTGATGGAGTTCAACGAAACACCGTAACCT 1056
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1009 AGAAGTGAAAACTGCCCTGTTTGTGGAAAGGTGATGGAGTTCCACGAAACACCGTAACTT 1068
Query 1057 GTTACCATTGATCCCGTCTTGTACTGCCTAAACCGAAGCTGGGGAGATTGACAAGGCAGC 1116
||| |||||||||| ||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct 1069 GTTGCCATTGATCCTGTCTTGTACTGCCTAGACCGGACCTGGGGAGATTGACAAGGCAGC 1128
Query 1117 AGAGAGATGTGAATAT-TTTT--AACAAT----G-----G-----G--G---AA-TGAGG 1153
|||||||||||||||| |||| |||||| | | | | || |||||
Sbjct 1129 AGAGAGATGTGAATATATTTTTTAACAATATATGATATTGTATATGATGGGGAAATGAGG 1188
Query 1154 AAATGTCTCTCTGCACGTTTGGCTAATGGAGTTCTGAGGAAACCCTCTAGAGAGAAAACA 1213
||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1189 AAACGTCTCTCTGCACGTTTGGCTTATGGAGTTCTGAGGAAACCCTCTTGAGAGAAAACA 1248
Query 1214 GCAGCAGCAGCAAAACACATGCTCACAGGAATCTGACATGTTTCTTAGGATTTGCCTATG 1273
||||||||||| |||| |||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1249 ACAGCAGCAGCAGAACAGATGCACACAGGAATCTGACATGTTTCTTAGGATTTGCCTTTG 1308
Query 1274 GGGCAGTGTTTTGATCAAGGCATGAAACTTTTTACATCATTTTGTATGATT 1324
| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1309 GCGCAGTGTTTTGTTCAAGGCATGAAACTTTTTACATCATTTTGTATGATT 1359
> AT3G02290.1 | Symbols: | RING/U-box superfamily protein | chr3:458419-461019
FORWARD LENGTH=1451
Length=1451
Score = 477 bits (258), Expect = 1e-133
Identities = 632/802 (79%), Gaps = 68/802 (8%)
Strand=Plus/Plus
Query 343 GAGAAGGAGATGGGCTGTGTTTCTTCTTGCTTTCGGGTCGAAGACTTTGAGGATTACCCG 402
||| || ||||||| ||||||||||||||||| |||||||| ||| |||| || ||| |
Sbjct 416 GAGGAGAAGATGGGATGTGTTTCTTCTTGCTTCCGGGTCGAGGACATTGATGAGTACATG 475
Query 403 AATCCAAGTAGTTCTTCTGT-TAACA-GAACCTG-CCCATGCCCGAGATGTCTCATTAAT 459
||||||| || | ||||| | | | ||| ||| ||| ||| ||||| || | ||
Sbjct 476 AATCCAAACAG--C-TCTGTCT-ATAGGAA-CTGTCCC-TGCATAAGATGCCTTGCTCAT 529
Query 460 AACTTCCTTAACCTGTATATCTCTTTATTCAGAAGAGGCGAAACCCGCTCTCTCCCGTCC 519
|| ||||||||||||||||| || | ||||||||||| ||||| ||||||||||| ||
Sbjct 530 AATTTCCTTAACCTGTATATTTCGGTCTTCAGAAGAGGGGAAACTCGCTCTCTCCCATCT 589
Query 520 TC-TTTACAGGCTACTAATGTATCAATAGCTTCATCTACTTCGTATGATAACTTTATGTC 578
|| || || ||||| || ||| ||| |||| ||| |||| | ||||||||| ||||
Sbjct 590 TCGGTT-CAAGCTAC---TGCATCGATAACTTCCTCTTCTTCACACGATAACTTTTTGTC 645
Query 579 T-AATACATTCCATTCTACTCCAAGGCCTCTGCCTTATGATACTGATCCAAGATACTTCC 637
| || |||||| |||||||||||| ||||||||||||||| ||||||| ||||||||||
Sbjct 646 TGAA-GCATTCCGTTCTACTCCAAGACCTCTGCCTTATGATGCTGATCCTAGATACTTCC 704
Query 638 GGTCAAGGCGTGATTCCCTTGTCTCAAGACGCGATAAGGGTTCAAGTCATTCTCATGAGG 697
| || | | | | ||||||||||| || |||||||||||||||||||||||||
Sbjct 705 GCTC-A--C-----T--C--GTCTCAAGACGGGAGAAGGGTTCAAGTCATTCTCATGAGG 752
Query 698 AAGCTGAGCCCTTAAGAAGCGAT-GCTGATGTGGATTCTGAGTCTTTCTCAGT-GGAAGG 755
||| ||| || |||||||||||| || |||| |||||||| |||||| || ||| ||
Sbjct 753 AAGTTGAACCTTTAAGAAGCGATAGC-GATGCAGATTCTGAATCTTTCGGGGTAGGAGGG 811
Query 756 AAGCAAATGGACTAATAAGCTTATT--A---TCTCTGGTGAAGATTCCAAAGAAGAGTTT 810
|||||||| ||||||| | | | | |||||| | ||||||||||||||||||
Sbjct 812 T-GCAAATGGGCTAATAA--TAAGTCCACCCTCTCTGATAAAGATTCCAAAGAAGAGTAC 868
Query 811 TCTA--AA-TCC--TCTCGGAGGATTCTTCAG-TCAAGGAC-AATGGC--TACTGGTA-A 860
|||| || ||| |||| |||||| || || |||||| | || | | || ||| |
Sbjct 869 TCTAGTAAATCCAGTCTC--AGGATT-TTGAGATCAAGGTCCAA-GTCAATAATGGCCGA 924
Query 861 -T--GAAGGTGTGTATATAACT-TCTGATGATGAAGATGTCTGTCCAACGTGTCTTGAAG 916
| ||| |||||||| | ||||| || ||||||||||| ||||| ||||||||||
Sbjct 925 CTCTGAAAACATGTATATAT-TGTCTGAAGACGAAGATGTCTGCCCAACTTGTCTTGAAG 983
Query 917 AATACACATCAGAGAACCCGAAGATTGTTACAAATTGTTCTCACCATTTCCACCTCAGTT 976
|||| |||||||||||||| |||||||| ||||| ||||| |||||||||||||| ||||
Sbjct 984 AATATACATCAGAGAACCCAAAGATTGTGACAAAATGTTCACACCATTTCCACCTTAGTT 1043
Query 977 GCATTTATGAATGGATGGAGAGAAGTGAAAACTGCCCTGTTTGTGGAAAGGTGATGGAGT 1036
|||||||||| ||||||||||||||||||||||| || || || |||||||||||||| |
Sbjct 1044 GCATTTATGAGTGGATGGAGAGAAGTGAAAACTGTCCAGTCTGCGGAAAGGTGATGGAAT 1103
Query 1037 TCAACGAAACACCGTAACC-T-GTTACCATTGATCCC-GTCTTGTACTGCCTAAACCGAA 1093
||||||||||||||| | | | | ||||||||||| ||| |||| | | | ||| |||
Sbjct 1104 TCAACGAAACACCGTGATCATCG--ACCATTGATCCGTGTCCTGTA-T-C-TGAACTGAA 1158
Query 1094 GCTGGGGA-GATTGACAAGGCA 1114
| ||||| ||| |||||||||
Sbjct 1159 ACCGGGGAAGAT-GACAAGGCA 1179
> AT5G38895.3 | Symbols: | RING/U-box superfamily protein | chr5:15571254-15573416
FORWARD LENGTH=1130
Length=1130
Score = 159 bits (86), Expect = 5e-38
Identities = 133/156 (85%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 879 TTCTGATGATGAAGATGTCTGTCCAACGTGTCTTGAAGAATACACATCAGAGAACCCGAA 938
||| |||||||||||| | |||||||| || ||||| || ||||| | ||||| |||||
Sbjct 849 TTCGGATGATGAAGATATTTGTCCAACCTGCCTTGATGATTACACTTTGGAGAATCCGAA 908
Query 939 GATTGTTACAAATTGTTCTCACCATTTCCACCTCAGTTGCATTTATGAATGGATGGAGAG 998
||| | || || |||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 909 GATAATCACCAAGTGTTCTCACCATTTCCACCTTAGCTGTATTTATGAATGGATGGAGAG 968
Query 999 AAGTGAAAACT-GCCCTGTTTGTGGAAAGGTGATGG 1033
|||||||| || |||| || ||||||||||||||||
Sbjct 969 AAGTGAAA-CTTGCCCCGTCTGTGGAAAGGTGATGG 1003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67820936295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5