BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488432
Length=1592
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15850.1 | Symbols: COL1, ATCOL1 | CONSTANS-like 1 | chr5:51... 2095 0.0
AT5G15845.1 | Symbols: | other RNA | chr5:5173185-5177889 FORW... 1500 0.0
> AT5G15850.1 | Symbols: COL1, ATCOL1 | CONSTANS-like 1 | chr5:5176091-5177897
REVERSE LENGTH=1698
Length=1698
Score = 2095 bits (1134), Expect = 0.0
Identities = 1493/1652 (90%), Gaps = 82/1652 (5%)
Strand=Plus/Plus
Query 13 AAA-AGTT-GCAACTTGCACGTTCCAGAACCTAGGTAACATGTGGATGGGTCCTATAGAA 70
||| |||| | || ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 5 AAATAGTTAG-AAGTTGCACGTTTCAGAACCTAGGTAACATGTGGATGGGTCCTATAGAA 63
Query 71 GATTACATAGGAAGGGGTGTTTACACTTA-T-A-G-AG--A-A-AG---TAGT-GTAACT 118
|||||||||||||| |||||||||||||| | | | || | | || ||| ||||||
Sbjct 64 GATTACATAGGAAGAGGTGTTTACACTTATTGAGGAAGAAAGAGAGAAAAAGTAGTAACT 123
Query 119 ATTGGTGCCATTGCAAAGATATAAGAAGACAATTAG---TTTT-GTT-TTTCACATTTTC 173
|||||||||||||||||||||||||||||||||||| |||| || ||||||| ||||
Sbjct 124 ATTGGTGCCATTGCAAAGATATAAGAAGACAATTAGTTTTTTTCTTTCTTTCACA-TTTC 182
Query 174 CTGATGGTTGATGATTCCAAAAGCTGTAAGCTTCTCTGCACTGGACCCCCTTCTCAGAAA 233
|| |||||||||||||| |||||||||||| ||||||||||||| |||||||||| |||
Sbjct 183 GTGCTGGTTGATGATTCC-AAAGCTGTAAGCATCTCTGCACTGGA-CCCCTTCTCAAAAA 240
Query 234 CTCAGCCAGCCACAAGGTGATCAAACGACTTTTCAAAGCCACAAACTTCTCGCCACGTGT 293
|||||||||||||||| |||||| | || ||||| ||||||||||||||||||||||
Sbjct 241 CTCAGCCAGCCACAAGATGATCACTCAAC--ATCAAACCCACAAACTTCTCGCCACGTGT 298
Query 294 CCAGATCTCAGGATTCTA---------TCC--TT-C---C-ACAACTAATATAACCTTCT 337
|||| ||||| |||||| ||| || | | |||||||||||| ||||||
Sbjct 299 CCAGCCCTCAGAATTCTATCCTTCCTTTCCATTTCCATTCAACAACTAATATAGCCTTCT 358
Query 338 TAGTTCCCTGCTACCTTTAGATACAATCTCACTCACCATCAAACAACTACAACATCTG-G 396
|||| ||||||| |||||| |||| ||||||||||||||||||||||||||||||||| |
Sbjct 359 TAGTCCCCTGCTGCCTTTACATACGATCTCACTCACCATCAAACAACTACAACATCTGCG 418
Query 397 GTTAGTATGATGAAAGTAGAGAGTAACTGGGGACAAGCCTGTGATACATGCCGATCAGCC 456
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 419 GTTAGTATGTTGAAAGTAGAGAGTAACTGGGCACAAGCCTGTGATACATGCCGATCAGCC 478
Query 457 GCCTGTACCGTGTACTGCCGGGCTGATTCTGCCTACCTGTGCACCAGCTGTGATGCTCAA 516
||||| |||||||||||||||||||||||||||||| ||||| |||| ||||||||||||
Sbjct 479 GCCTGCACCGTGTACTGCCGGGCTGATTCTGCCTACTTGTGCTCCAGTTGTGATGCTCAA 538
Query 517 GTTCATGCTGCCAATCGTCTTGCTTCTCGCCATGAACGTGTTCGAGTCTGTCAATCATGT 576
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 539 GTTCATGCTGCCAATCGTCTTGCTTCCCGCCATGAACGTGTTCGAGTCTGTCAATCATGT 598
Query 577 GAGCGAGCCCCGGCTGCCTTTTTCTGCAAGGCAGATGCTGCATCTCTATGCACAACCTGT 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GAGCGAGCCCCGGCTGCCTTTTTCTGCAAGGCAGATGCTGCATCTCTATGCACAACCTGT 658
Query 637 GATTCAGAGATTCATTCAGCAAACCCACTTGCTAGACGCCATCAACGAGTTCCAATTCTG 696
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GATTCAGAGATTCATTCCGCAAACCCACTTGCTAGACGCCATCAACGAGTTCCAATTCTG 718
Query 697 CCCATTTCTGAAAACTCTTACAGTTCCACGGCCACTAACCATTCATGTGAGACAACAGTG 756
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CCCATTTCTGAGTACTCTTACAGTTCCACGGCCACTAACCATTCATGTGAGACAACAGTG 778
Query 757 ACAGATCCAGAGAACAGACTGGTGCTTGGTCAAGAAGAAGAGGATGAAGATGAAGCAGAG 816
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 779 ACAGATCCAGAGAACAGACTTGTGCTTGGTCAAGAAGAAGAGGATGAAGATGAAGCAGAG 838
Query 817 GCGGCTTCGTGGTTGTTGCCTAATTCAGGGAAAAACAATGGTAACAACAATGGGTTCTCT 876
|||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 839 GCGGCTTCATGGTTGTTGCCTAATTCAGGGAAAAACAGTGGTAACAACAATGGCTTCTCG 898
Query 877 ATTGGTGACGAGTTTCTGGACCTTGTTGATTACAGTTCGAGTGATAAGCAATTCACGGAT 936
||||| || ||||||||| ||||||||||||| ||||||||||||||||||||||| |||
Sbjct 899 ATTGGGGATGAGTTTCTGAACCTTGTTGATTATAGTTCGAGTGATAAGCAATTCACAGAT 958
Query 937 CAATCCAATCAGTATCAACTAGACTGCAACGTACCTCAGAGGAGCTATGAGGA---TGGA 993
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 959 CAATCCAATCAGTATCAACTAGACTGCAACGTACCTCAGAGGAGCTATGGGGAAGATGGA 1018
Query 994 GTCGTACCACTTCAAGTTGAAGTATCAAAGGGTCACATGCACCACGAGCAACAGAACTTT 1053
|| || ||||||||| |||||||||||||||| || || |||| |||||||||||||||
Sbjct 1019 GTTGTTCCACTTCAAATTGAAGTATCAAAGGG-CA--TGTACCAAGAGCAACAGAACTTT 1075
Query 1054 CAGTTGAGTATCACCTGTGGCTCCCCAAGAGCTCATCGAAGCTCCAATGGTTCCCTAAGT 1113
||| ||||||||| |||||||||| |||||| ||||||||||||||||||||| |||
Sbjct 1076 CAGCTGAGTATCAACTGTGGCTCCTGGGGAGCTCTTCGAAGCTCCAATGGTTCCCTCAGT 1135
Query 1114 CATATGGT-ACATGTTTCATCTATTGACCTGGGAGTTGTGCC--AG--A-----G--T-- 1159
|||||||| | ||||||||||||| ||||||||||||||||| || | | |
Sbjct 1136 CATATGGTGA-ATGTTTCATCTATGGACCTGGGAGTTGTGCCGGAGTCAACAACGAGTGA 1194
Query 1160 C--AACA--A--A--CCCAAGATCGCCCAAAGCGGTAACAGACCAACTACCTGACCCTCC 1211
| |||| | | |||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1195 CGCAACAGTATCAAACCCAAGATCGCCCAAAGCGGTAACAGACCAACCACCTTACCCTCC 1254
Query 1212 AGCTCAGATGCTCAGTCCaagagacagagaggctagagtcctgagatacagagagaagaa 1271
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1255 AGCTCAGATGCTCAGTCCAAGGGACAGAGAAGCTAGAGTCCTGAGATACAGAGAGAAGAA 1314
Query 1272 gaagatgagaaaatttgagaagacgataagatATGCTTCAAGGAAAGCGTATGCAGAGAA 1331
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 GAAGATGAGGAAATTTGAGAAGACGATAAGATATGCTTCAAGGAAAGCGTATGCAGAGAA 1374
Query 1332 AAGACCACGGATCAAGGGGCGGTTTGCAAAGAGGAACGAAGTTGATGCAGAGGCAAACGA 1391
|||||||||||||||||| ||||||||||||| ||| || || |||| |||||||||| |
Sbjct 1375 AAGACCACGGATCAAGGGCCGGTTTGCAAAGAAGAAAGATGTCGATGAAGAGGCAAACCA 1434
Query 1392 AGCTTTCTCCACAATCATAACGTTTGACACCGGATATGGAATTGTTCCATCATTCTGATG 1451
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1435 AGCTTTCTCCACAATGATAACATTTGACACCGGATATGGAATTGTTCCATCATTCTGATG 1494
Query 1452 CTGCTATGGCAAAACTAGACTGCATGCTTGTAAATTACTTCTGGTTTGAAATTCCTGCAA 1511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 CTGCTATGGCAAAACTAGACTGCATGCTTGTAAATTACTTCTGGTTTGAAATTCCTGCAA 1554
Query 1512 GTTGTTACCACGGTT--ATGCATATAGGC-CTGTAGTTT--T-GT----C-TAACTAGTA 1560
||| ||||||||||| ||||||||||| ||||||||| | || | |||||||||
Sbjct 1555 GTTATTACCACGGTTTTATGCATATAGGGTCTGTAGTTTACTAGTTTTGCCTAACTAGTA 1614
Query 1561 CGAGTTAATTAGATATATATTCATATTTAGCT 1592
||||||||||||||||| | ||||| ||||||
Sbjct 1615 CGAGTTAATTAGATATACACTCATACTTAGCT 1646
> AT5G15845.1 | Symbols: | other RNA | chr5:5173185-5177889 FORWARD
LENGTH=2248
Length=2248
Score = 1500 bits (812), Expect = 0.0
Identities = 1046/1151 (91%), Gaps = 48/1151 (4%)
Strand=Plus/Minus
Query 25 TTGCACGTTCCAGAACCTAGGTAACATGTGGATGGGTCCTATAGAAGATTACATAGGAAG 84
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2239 TTGCACGTTTCAGAACCTAGGTAACATGTGGATGGGTCCTATAGAAGATTACATAGGAAG 2180
Query 85 GGGTGTTTACACTTA-T-A-G-AG--A-A-AG---TAGT-GTAACTATTGGTGCCATTGC 132
|||||||||||||| | | | || | | || ||| ||||||||||||||||||||
Sbjct 2179 AGGTGTTTACACTTATTGAGGAAGAAAGAGAGAAAAAGTAGTAACTATTGGTGCCATTGC 2120
Query 133 AAAGATATAAGAAGACAATTAG---TTTT-GTT-TTTCACATTTTCCTGATGGTTGATGA 187
|||||||||||||||||||||| |||| || ||||||| |||| || ||||||||||
Sbjct 2119 AAAGATATAAGAAGACAATTAGTTTTTTTCTTTCTTTCACA-TTTCGTGCTGGTTGATGA 2061
Query 188 TTCCAAAAGCTGTAAGCTTCTCTGCACTGGACCCCCTTCTCAGAAACTCAGCCAGCCACA 247
|||| |||||||||||| ||||||||||||| |||||||||| |||||||||||||||||
Sbjct 2060 TTCC-AAAGCTGTAAGCATCTCTGCACTGGA-CCCCTTCTCAAAAACTCAGCCAGCCACA 2003
Query 248 AGGTGATCAAACGACTTTTCAAAGCCACAAACTTCTCGCCACGTGTCCAGATCTCAGGAT 307
|| |||||| | || ||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 2002 AGATGATCACTCAAC--ATCAAACCCACAAACTTCTCGCCACGTGTCCAGCCCTCAGAAT 1945
Query 308 TCTA---------TCC--TT-C---C-ACAACTAATATAACCTTCTTAGTTCCCTGCTAC 351
|||| ||| || | | |||||||||||| |||||||||| ||||||| |
Sbjct 1944 TCTATCCTTCCTTTCCATTTCCATTCAACAACTAATATAGCCTTCTTAGTCCCCTGCTGC 1885
Query 352 CTTTAGATACAATCTCACTCACCATCAAACAACTACAACATCTG-GGTTAGTATGATGAA 410
||||| |||| ||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1884 CTTTACATACGATCTCACTCACCATCAAACAACTACAACATCTGCGGTTAGTATGTTGAA 1825
Query 411 AGTAGAGAGTAACTGGGGACAAGCCTGTGATACATGCCGATCAGCCGCCTGTACCGTGTA 470
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1824 AGTAGAGAGTAACTGGGCACAAGCCTGTGATACATGCCGATCAGCCGCCTGCACCGTGTA 1765
Query 471 CTGCCGGGCTGATTCTGCCTACCTGTGCACCAGCTGTGATGCTCAAGTTCATGCTGCCAA 530
|||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||
Sbjct 1764 CTGCCGGGCTGATTCTGCCTACTTGTGCTCCAGTTGTGATGCTCAAGTTCATGCTGCCAA 1705
Query 531 TCGTCTTGCTTCTCGCCATGAACGTGTTCGAGTCTGTCAATCATGTGAGCGAGCCCCGGC 590
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1704 TCGTCTTGCTTCCCGCCATGAACGTGTTCGAGTCTGTCAATCATGTGAGCGAGCCCCGGC 1645
Query 591 TGCCTTTTTCTGCAAGGCAGATGCTGCATCTCTATGCACAACCTGTGATTCAGAGATTCA 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644 TGCCTTTTTCTGCAAGGCAGATGCTGCATCTCTATGCACAACCTGTGATTCAGAGATTCA 1585
Query 651 TTCAGCAAACCCACTTGCTAGACGCCATCAACGAGTTCCAATTCTGCCCATTTCTGAAAA 710
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1584 TTCCGCAAACCCACTTGCTAGACGCCATCAACGAGTTCCAATTCTGCCCATTTCTGAGTA 1525
Query 711 CTCTTACAGTTCCACGGCCACTAACCATTCATGTGAGACAACAGTGACAGATCCAGAGAA 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 CTCTTACAGTTCCACGGCCACTAACCATTCATGTGAGACAACAGTGACAGATCCAGAGAA 1465
Query 771 CAGACTGGTGCTTGGTCAAGAAGAAGAGGATGAAGATGAAGCAGAGGCGGCTTCGTGGTT 830
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1464 CAGACTTGTGCTTGGTCAAGAAGAAGAGGATGAAGATGAAGCAGAGGCGGCTTCATGGTT 1405
Query 831 GTTGCCTAATTCAGGGAAAAACAATGGTAACAACAATGGGTTCTCTATTGGTGACGAGTT 890
||||||||||||||||||||||| ||||||||||||||| ||||| ||||| || |||||
Sbjct 1404 GTTGCCTAATTCAGGGAAAAACAGTGGTAACAACAATGGCTTCTCGATTGGGGATGAGTT 1345
Query 891 TCTGGACCTTGTTGATTACAGTTCGAGTGATAAGCAATTCACGGATCAATCCAATCAGTA 950
|||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1344 TCTGAACCTTGTTGATTATAGTTCGAGTGATAAGCAATTCACAGATCAATCCAATCAGTA 1285
Query 951 TCAACTAGACTGCAACGTACCTCAGAGGAGCTATGAGGA---TGGAGTCGTACCACTTCA 1007
||||||||||||||||||||||||||||||||||| ||| |||||| || ||||||||
Sbjct 1284 TCAACTAGACTGCAACGTACCTCAGAGGAGCTATGGGGAAGATGGAGTTGTTCCACTTCA 1225
Query 1008 AGTTGAAGTATCAAAGGGTCACATGCACCACGAGCAACAGAACTTTCAGTTGAGTATCAC 1067
| |||||||||||||||| || || |||| |||||||||||||||||| |||||||||
Sbjct 1224 AATTGAAGTATCAAAGGG-CA--TGTACCAAGAGCAACAGAACTTTCAGCTGAGTATCAA 1168
Query 1068 CTGTGGCTCCCCAAGAGCTCATCGAAGCTCCAATGGTTCCCTAAGTCATATGGTACATG- 1126
|||||||||| |||||| ||||||||||||||||||||| |||||||||||| | |
Sbjct 1167 CTGTGGCTCCTGGGGAGCTCTTCGAAGCTCCAATGGTTCCCTCAGTCATATGGTA-A-GC 1110
Query 1127 TTTCATCTATT 1137
|||||| ||||
Sbjct 1109 TTTCATATATT 1099
Score = 263 bits (142), Expect = 4e-69
Identities = 160/169 (95%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 1339 CGGATCAAGGGGCGGTTTGCAAAGAGGAACGAAGTTGATGCAGAGGCAAACGAAGCTTTC 1398
||||||||||| ||||||||||||| ||| || || |||| |||||||||| ||||||||
Sbjct 854 CGGATCAAGGGCCGGTTTGCAAAGAAGAAAGATGTCGATGAAGAGGCAAACCAAGCTTTC 795
Query 1399 TCCACAATCATAACGTTTGACACCGGATATGGAATTGTTCCATCATTCTGATGCTGCTAT 1458
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 TCCACAATGATAACATTTGACACCGGATATGGAATTGTTCCATCATTCTGATGCTGCTAT 735
Query 1459 GGCAAAACTAGACTGCATGCTTGTAAATTACTTCTGGTTTGAAATTCCT 1507
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 GGCAAAACTAGACTGCATGCTTGTAAATTACTTCTGGTTTGAAATTCCT 686
Score = 143 bits (77), Expect = 6e-33
Identities = 85/89 (96%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 1163 CAAACCCAAGATCGCCCAAAGCGGTAACAGACCAACTACCTGACCCTCCAGCTCAGATGC 1222
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 942 CAAACCCAAGATCGCCCAAAGCGGTAACAGACCAACCACCTTACCCTCCAGCTCAGATGC 883
Query 1223 TCAGTCCaagagacagagaggctagagtc 1251
|||||||||| |||||||| |||||||||
Sbjct 882 TCAGTCCAAGGGACAGAGAAGCTAGAGTC 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78614053470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5