BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488435
Length=1542
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15860.1 | Symbols: ATPCME, PCME | prenylcysteine methyleste... 2246 0.0
> AT5G15860.1 | Symbols: ATPCME, PCME | prenylcysteine methylesterase
| chr5:5178505-5181383 REVERSE LENGTH=1575
Length=1575
Score = 2246 bits (1216), Expect = 0.0
Identities = 1471/1585 (93%), Gaps = 53/1585 (3%)
Strand=Plus/Plus
Query 1 GTGGAGAAGGAAATGGAAAGCGCACAAAAGCGAAGATGACaaaaaaaGTTTGAAATTCAA 60
||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1 GTGTAGAAGGAAATGGAAAGCGCACAAAAGCGAAGATAACAAAAAGAGTTTGAAATTCAA 60
Query 61 AAGAGAAG-G-AATTCGA-GA-TC--------CGAGA---AG-A----A-G----AA--G 93
|||||||| | || ||| || || ||||| | | | | || |
Sbjct 61 AAGAGAAGAGCAACACGAAGAATCTTGGAATTCGAGATCCACTATTTCACGGCGGAAAAG 120
Query 94 ATGCACTTC-CCTCTTCAGACTCAGCAGCCGGAGCAGCGATGCCGGCCGATGACCTCGAC 152
||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 ATGCA-TTCGCCTCTTCAGACTCAGCAGCCGGAGCAGCGATGCTGGCCGATGACCTCGAC 179
Query 153 GGTATCGGAGATCGAGGAAGTTATACCCGATGAGGACTCCGATAGAACGACTCTTCTTAA 212
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 180 GGTATCGGAGATCGAGGAAGTTCTACCCGATGAGGACTCCGATAGAACGACTCTTCTTAA 239
Query 213 CGGTGAACCGTTGCGTCGTCGAGTTTCCGGTAAGTTACCGGTGGACGAAGGACCTCGTCG 272
|||||||||||| ||||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct 240 CGGTGAACCGTTACGTCGTCGAGTTTCCGGGAAGTCGCCGGTTGACGAAGGACCTCGTCG 299
Query 273 GATTTTCCGGCAGCAATCGTTCGGCCGCGATATCGGCCACGCGGCAGCTGAGACGTACCT 332
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 300 GATTTTCCGGCAGCAATCGTTCGGTCGCGATATCGGCCACGCGGCAGCTGAAACGTATCT 359
Query 333 AATTACTGGACTTAGCTTCAAGCTTCTTCGTTACCTCGGGGTAGGCTATCGATGGATGAC 392
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 AATTACTGGACTTAGCTTCAAGCTTCTTCGATACCTCGGGGTAGGCTATCGATGGATGAC 419
Query 393 AAAATTACTTGCCCTTACATGTTACGCTATGCTGCTTATGCCTGGCTTTCTTCAAGTTGC 452
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 420 AAAATTACTTGCCCTTACATGTTATGCTATGCTTCTTATGCCTGGCTTTCTTCAAGTTGC 479
Query 453 ATATAGTTATTTTTTCTCAAAACAAGTCCGGAGGAGTATAGTGTATGGAGATCAACCAAG 512
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATATAGTTATTTTTTCTCAAAGCAAGTCCGGAGGAGTATAGTGTATGGAGATCAACCAAG 539
Query 513 GAACAGGCTGGATCTGTACTTGCCAAGCAACAACGATGGCTTGAAGCCGGTTGTGGTTTT 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAACAGGCTGGATCTGTACTTGCCAAGCAACAACGATGGCTTGAAGCCGGTTGTGGTTTT 599
Query 573 TGTGACGGGTGGAGCTTGGATTATTGGGTACAAAGCTTGGGGCTCGCTCTTGGGAATGCA 632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGTGACGGGTGGAGCTTGGATTATTGGGTACAAAGCTTGGGGCTCGCTCTTGGGAATGCA 659
Query 633 GCTAGCAGAAAGGGATATCATTGTAGCATGCCTTGACTACAGGAACTTTCCTCAGGGAAC 692
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GCTAGCAGAAAGAGATATCATTGTAGCATGCCTTGACTACAGGAACTTTCCTCAGGGAAC 719
Query 693 AATTAGTGATATGGTGACTGATGCTTCTCAAGGAATCTCATTTGTCTGCAATCACATCTC 752
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 720 AATTAGTGATATGGTGACTGATGCTTCTCAAGGAATCTCATTTGTCTGCAATAACATCTC 779
Query 753 TGCATTTGGAGGTGACCCCAACAGGATCTACCTGATGGGGCAATCAGCTGGTGCCCATAT 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGCATTTGGAGGTGACCCCAACAGGATCTACCTGATGGGGCAATCAGCTGGTGCCCATAT 839
Query 813 AGCCGCTTGTGCTCTGTTGGAACAAGCTACTAAAGAATCAAAAGGAGAAAGCATCTCCTG 872
||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 840 AGCCGCTTGTGCTCTATTGGAACAAGCTACTAAAGAATTAAAAGGAGAGAGCATCTCCTG 899
Query 873 GAGGGTGTCCCAGATAAAAGCTTATTTCGGATTATCTGGAGGGTACAATCTATACAATTT 932
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 900 GACAGTGTCCCAGATAAAAGCTTATTTTGGATTATCTGGAGGGTACAATCTATACAAGTT 959
Query 933 GGTTGATCACTTCCATAATCGGGGACTGTATCGCTCGATTTTCCTAAGCATAATGGAAGG 992
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 960 GGTTGATCACTTCCATAATCGGGGTCTGTATCGCTCGATTTTCCTAAGCATAATGGAAGG 1019
Query 993 AGAGGAGTCCTTTAAAAAATTCTCTCCAGAAGTAAGATTGAAAGACCCCA-TTGTTGAAA 1051
||| ||||||||| | ||||||||||| ||||||||| |||||||||| | |||||| ||
Sbjct 1020 AGAAGAGTCCTTTGAGAAATTCTCTCCGGAAGTAAGACTGAAAGACCC-AGTTGTTGGAA 1078
Query 1052 AAGCTG-TGTCTCTATTACCTCCTATTATACTTTTCCATGGATCCTCAGATTATTCCATA 1110
|||||| | ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1079 AAGCTGCT-TCTCTTTTACCTCCTATTATACTTTTCCACGGATCCTCAGATTATTCCATA 1137
Query 1111 CCATGCGATGAAAGCAAAACTTTTACAGAGGCTCTCCAAGCTGTTGGAGCCAAAGCCGAG 1170
||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||
Sbjct 1138 CCATGCGATGAAAGCAAAACTTTTACAGACGCTCTGCAAGCTGTTGGAGCAAAAGCCGAG 1197
Query 1171 CTTGTTTTATACAGCGGAAAGACACATACCGATTTATTTCTTCAGGATCCCTTAAGAGGC 1230
||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 1198 CTTGTTTTATACAGCGGAAAGACACATACTGACTTATTTCTTCAGGATCCCTTACGAGGA 1257
Query 1231 GGTAAAGACGAACTCTTTGATGACATAGTCTCTGTGATACATGCGGAGGACAATGACGCG 1290
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1258 GGTAAAGACGAACTCTTTGATGACATAGTCTCTGTGATACATGCGGAGGACAATGATGGG 1317
Query 1291 CTGACGAAAGACTCATTGGCTCCTCCCAGAAAGCGTCTTGTCCCAGAGTTGTTGCTGAAA 1350
||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1318 CTGACCAAAGACTCGTTGGCTCCTCCCAGAAAGCGTCTTGTACCAGAGTTGTTACTGAAA 1377
Query 1351 CTGGCTCGTGAGGTTAGCCCTTTCTGACTGCCaaaaaaaCGAAAAGAAGCTT-GTTTGTT 1409
|||||||||||| ||||||||||||||||||||| ||| ||||| |||||| |||||||
Sbjct 1378 CTGGCTCGTGAGATTAGCCCTTTCTGACTGCCAAGAAAG-GAAAACAAGCTTTGTTTGTT 1436
Query 1410 GATCATCAGtttttttACCTTTGTTAGTTGCTGTGTGTTTTAATTGCAT--G-A-----T 1461
|||| ||||||||| |||||||||||||||||||| |||||||||||| | | |
Sbjct 1437 GATCCTCAGTTTTT--ACCTTTGTTAGTTGCTGTGT-TTTTAATTGCATCAGTAGAACAT 1493
Query 1462 ---GTAAATAAAAACAAACGTTGTGGATCCAC-AACTATTTTATTTGACCCATGTAGATT 1517
|||||||||||||||| |||| | ||||| || |||| ||||||||||||||||||
Sbjct 1494 CATGTAAATAAAAACAAACTTTGTTGCTCCACCAA--ATTT-ATTTGACCCATGTAGATT 1550
Query 1518 TGAACACATCAATATGATTACGTCC 1542
||||||||| ||||||||||| |||
Sbjct 1551 TGAACACATGAATATGATTACTTCC 1575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76104026220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5