BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488437
Length=1293
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15880.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 2122 0.0
AT5G15890.1 | Symbols: TBL21 | TRICHOME BIREFRINGENCE-LIKE 21 |... 158 2e-37
> AT5G15880.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:5185778-5187706
FORWARD LENGTH=1302
Length=1302
Score = 2122 bits (1149), Expect = 0.0
Identities = 1255/1304 (96%), Gaps = 15/1304 (1%)
Strand=Plus/Plus
Query 1 AGACGAGATATGGCCGGACTTCTAGCTTGGGCCGCCGATGTCGTCGGTAAAAATGGAAAA 60
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2 AGAAGAGATATGGCCGGACTTCTAGCTTGGGCTGCCGATGTCGTCGGTAAAAATGGAAAA 61
Query 61 GAAGGAGACGATGAGAAGGATCGGATCCCATTGGTATTCACAGAGGATCAGCAGAAATAC 120
||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 62 GAAGGAGACGATGAGAAGGATCGGATCCCATTGGTTTTCACGGAGGAGCAGCAGAAATAC 121
Query 121 GTCGATGAGCTAGGCCGGAAAGCGACAACCCTCAGCCGTTCGATCCAAGATCTACGGCTC 180
||||||||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||
Sbjct 122 GTCGATGAGCTTGGCCGAAAAGCGACAAACCTCAGCCGTTCGATCCAAGATCTGCGGCTC 181
Query 181 AGATTGCCTCCACCGGATATCTCCCAGCGTCTACCTGACCTTCATGCTCACTCCCTTGCC 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 AGATTGCCTCCACCGGATATCTCCCAGCGTCTACCTGACCTTCATGCTCACTCCCTTGCG 241
Query 241 TCCAATGCCGCTCTCACTCTTCAGCTTGATTCGCACTCCGCTACTCGTGAACAGGCACAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 TCCAATGCCGCTCTCACTCTTCAGCTTGATTCGCACTCCGCTACTCGTGAACAGGCACAC 301
Query 301 ATGAGAGAGCAGACACTTCTGGAAGAAAATAGTGCATATGAGAATGCAATATCAATCTGT 360
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 302 ATGAGAGAGCAGACACTGCTGGAAGAAAATAGTGCATATGAGAATGCAATATCAACCTGT 361
Query 361 GAGAGC-AAAATTGAAGAGAAGAGGAATGAAGCAGATTCTCTTCTTAGAAAGTTGAAGGA 419
|||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GAGA-CAAAAATAGAAGAGAAGAGGAATGAAGCAGATTCTCTTCTTAGAAAGTTGAAGGA 420
Query 420 GCTAGAAGATGTGGAGGAAAACTTGAAAACTAAGCAGGA-AGATGCACAAGCTTCTCTAG 478
|||||||| ||| |||||||||||||||||| ||||||| | ||||||||||||||||||
Sbjct 421 GCTAGAAGCTGTAGAGGAAAACTTGAAAACTGAGCAGGATA-ATGCACAAGCTTCTCTAG 479
Query 479 ATGCAAGGCAGTCCAGAAGCTCTAGTGAAACTGTTATTCAGCCTGATGGGAATGGAAAAG 538
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATGCAAGGCAGTCCAAAAGCTCTAGTGAAACTGTTATTCAGCCTGATGGGAATGGAAAAG 539
Query 539 ATGGAGCAGATACAGAGGCCATGAAGT-CTGTTATGCTAGAGAAGTTGGAGAGCAAAAAG 597
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 540 ATGGAGCAGATACAGAGGCCATGAAGTCCT-TTATGCTAGAGAAGTTGGAGAGCAAAAAG 598
Query 598 AACGATTTGAGTTCAATGGAAGCAAAAGTTCAGGATTTAGAAAGGAGTTGGGCTGTTATA 657
|||||| |||||| |||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 599 AACGATATGAGTTTAATGGAAGAAAAAGTTCAGGATTTAGAGAGGAGTTGGGCTGTTATA 658
Query 658 CAGGAAAGAGCATTGAAGCAGCCTTCTCCAGCTCAGAGAGAGAAGACACTGGATAAACAA 717
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CAGGAAAGAGCACTGAAGCAGCCTTCTCCAGCTCAGAGAGAGAAGACACTGGATAAACAA 718
Query 718 CTTCATAGCCTAATCGAGCAATTAGCTGCAAAGCAGGCACAAGCAGAGGGGATTGTTGGT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CTTCATAGCCTAATCGAGCAATTAGCTGCAAAGCAGGCACAAGCAGAGGGGATTGTTGGT 778
Query 778 GAGATTCATTC-GAACGAGATGGAGTTAGAGAGACTAAACAATTTGTGGAGAAGATATGA 836
|||||||| || || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 779 GAGATTCA-TCTAAATGAGATGGAGTTAGAGAGACTAAACAATTTATGGAGAAGATATGA 837
Query 837 AAGCTTTAACGTTGAGGGGAACGCTGCGAGGAACAGATTCAAGAGAACAAATTCAGATAG 896
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AAGCTTTAACGTTGAAGGGAACGCTGCGAGGAACAGATTCAAGAGAACAAATTCAGATAG 897
Query 897 AGAATTTGCATCAGACCACGAAGTTGATGCTCATTCCTACCTTCCATATTCATCTGCTAC 956
||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 898 AGAATTTACATCAGACCACGAAGTTGATGGTCATTCCTACCTTCCATATTCATCTGCTAC 957
Query 957 AAGAAATGGGACCCAAACAAGGCTTATGTATCTCAGGTCAGCTTTTGTCGTCTACATTTT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AAGAAATGGGACCCAAACAAGGCTTATGTATCTCAGGTCAGCTTTTGTCGTCTACATTTT 1017
Query 1017 GGCTTTGCAAGTCCTGGTTTTCATCAAAATTTCCTTTTGAGAAGTTGTGTACACGAGTAC 1076
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1018 GGCTTTGCAAGTCCTGGTTTTCATCAGAATTTCCTTTTGAGAAGTTGTGTACACGAGTAG 1077
Query 1077 TCTGTTGTGCTTTTAGTTTGCGCAAGGGAGTCAAAATACTGCATATAAAAATTTATAGGA 1136
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TCTGTTCTGCTTTTAGTTTGCGCAAGGGAGTCAAAATACTGCATATAAAAATTTATAGGA 1137
Query 1137 ATACAATAATTGTTGTCAAATGGTTTTCTGTCCTTCCATATGGATATATGGCATTTGAAT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1138 ATACAATAATTGTTGTCAAATGGTTTTCTGTCCTTCCATATGGATATATGGCAATTGAAT 1197
Query 1197 ACTGAGACTCCTATATGAATCTTTCTTTACAATTTTTCTTGATATT---T----GTCTCC 1249
||||||||||||| |||||||||||||||||||||||||||||||| | ||||||
Sbjct 1198 ACTGAGACTCCTACATGAATCTTTCTTTACAATTTTTCTTGATATTAGATATATGTCTCC 1257
Query 1250 ACTACTCATTCTTGAGGGATGCTTTCTAGTTCTCTGTCTTCATC 1293
||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1258 ACTACTCATTCTTGAGGGATGCTTTCTAGTTATCTGTCTTCATC 1301
> AT5G15890.1 | Symbols: TBL21 | TRICHOME BIREFRINGENCE-LIKE 21
| chr5:5187587-5189348 REVERSE LENGTH=1681
Length=1681
Score = 158 bits (85), Expect = 2e-37
Identities = 109/119 (92%), Gaps = 7/119 (6%)
Strand=Plus/Minus
Query 1182 ATATGGCATTTGAATACTGAGACTCCTATATGAATCTTTCTTTACAATTTTTCTTG--A- 1238
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1681 ATATGGCAATTGAATACTGAGACTCCTACATGAATCTTTCTTTACAATTTTTCTTGATAT 1622
Query 1239 T--AT-T-TGTCTCCACTACTCATTCTTGAGGGATGCTTTCTAGTTCTCTGTCTTCATC 1293
| || | |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1621 TAGATATATGTCTCCACTACTCATTCTTGAGGGATGCTTTCTAGTTATCTGTCTTCATC 1563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63604090515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5