BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488438
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15900.1 | Symbols: TBL19 | TRICHOME BIREFRINGENCE-LIKE 19 |... 2006 0.0
AT3G02440.1 | Symbols: TBL20 | TRICHOME BIREFRINGENCE-LIKE 20 |... 239 6e-62
> AT5G15900.1 | Symbols: TBL19 | TRICHOME BIREFRINGENCE-LIKE 19
| chr5:5189491-5192070 REVERSE LENGTH=1314
Length=1314
Score = 2006 bits (1086), Expect = 0.0
Identities = 1232/1304 (94%), Gaps = 4/1304 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCTTCTTCATTCTGCAACATTTCCAAGTAAACAAAAGCTACTCATCGTAGTGA-C 59
||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| |
Sbjct 1 ATGGAGCTTGTTCATTCTGCAACATTTCCATGTAAACAAAAGCTACTCATCGCAGTGACC 60
Query 60 AGTTGCCATAACTCTCTTCACCATCATCCCTCTTCTCTACCCTTTTCTTGAAGACCCTAA 119
| |||| | | |||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 A-TTGCTACATCTCTTTTAACCATCATCCCTCTTCTCTACCCTTTGCTTGAAGACCCTAA 119
Query 120 CTTCTTCCTCAAGCAACAACCTCCAAGCCAAAGCAGCATCATCAAGCTCGAAAACGGCGT 179
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 120 CTTCTTCCTCAAGCAACAACCTCCAAGCCAAAGCAGCATCATCAACCTCGAAAACGGTGT 179
Query 180 TGTAACATCACATGAGAGCTGCGACATATTCTCGGGAGAATGGGTTCCTAACCCTGAGGC 239
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 180 TGTAACATCACATGACAGCTGCGACATATTCTCGGGAGAGTGGGTTCCTAACCCTGAGGC 239
Query 240 ACCTTACTACACCAACACGACGTGCTGGGCGATACACGAACACCAAAACTGCATGAAGTT 299
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 ACCTTACTACACCAACACGACGTGCTGGGCGATACACGAACACCAAAATTGCATGAAGTT 299
Query 300 TGGAAGACCCGACACGGATTTCATCAAGTGGAAATGGAAACCTTATGGGTGCGAAGATGG 359
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 300 TGGAAGACCCGACACGGATTTCATCAAATGGAAATGGAAACCTTACGGGTGCGAAGACGG 359
Query 360 CTTGCCAGTTTTTGACCCGTTTAGGTTTCTTGAGATCGTGAGAGGTAAAACCATGGCGTT 419
|||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTTGCCGGTATTTGACCCGGTTAGGTTTCTTGAGATCGTGAGAGGTAAAACCATGGCGTT 419
Query 420 TGTTGGTGACTCAGTTAGCAGAAACCACATGCAGTCTTTGATCTGCCTTCTCTCTCAGGT 479
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 TGTTGGTGACTCAGTTAGCAGAAACCACATGCAGTCTTTGATCTGCCTTCTTTCTCAGGT 479
Query 480 TGAGTATCCGATGGATGCTTCCGTTAAGGATGACGATTATTTCAAACGATGGACATACGA 539
||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 480 TGAATATCCGATGGATGCTTCGGTTAAGAATGACGATTATTTCAAACGATGGACATACGA 539
Query 540 AACATACAACTTCACGATCGCCGCATTTTGGACACCACACTTGGTAAAGTCCAAAGAACC 599
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 AACATACAATTTCACGATCGCCGCATTTTGGACACCACACTTGGTTAAGTCCAAAGAACC 599
Query 600 CGACCAGACCCAGACCGAGCATACTGATATTTTCGACCTATACCTCGACGAGGCAGACGA 659
||||||||||||| || |||||| ||||||||| ||||||||||| || |||||||||||
Sbjct 600 CGACCAGACCCAGCCCAAGCATATTGATATTTTTGACCTATACCTTGATGAGGCAGACGA 659
Query 660 GAGTTGGACAGCCGATATAGGAGATTTTGACTACGTGATTATCTCATCTGGTCACTGGCA 719
|||||||||||||||||||||||||||||||| ||| || ||||| ||||| ||||||||
Sbjct 660 GAGTTGGACAGCCGATATAGGAGATTTTGACTTCGTAATCATCTCTTCTGGCCACTGGCA 719
Query 720 TTACCGGCCATCAGTCTACTACGAAAACCGGACAATCACCGGTTGCCATTATTGCCAATT 779
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 TTACCGGCCATCAGTCTACTACGAAAACCGGACTATCACCGGTTGCCATTATTGCCAATT 779
Query 780 ACCGAACATAACCGATCTCACAATGTTTTACGGGTATAGAAAAGCGTTTAGAACCGCGTT 839
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 780 ACCGAACATAACCGATCTCACAATGTTTTATGGGTATAGAAAAGCTTTTAGAACCGCGTT 839
Query 840 TAAAGCGATCTTGGACTCGGAAAGCTTCAAAGGGGTAATGTACTTACGAAGTTTTGCACC 899
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 840 TAAAGCGATCTTGGATTCGGAAAGCTTCAAAGGCGTAATGTACTTACGAAGTTTTGCACC 899
Query 900 GTCGCATTTTGAGGGCGGGTTATGGAACGAAGGAGGAAATTGTTTGAGGAAACAACCTTA 959
||| |||||||| |||||||| ||||| ||||||||| ||||||||||||||||||||||
Sbjct 900 GTCACATTTTGAAGGCGGGTTGTGGAATGAAGGAGGAGATTGTTTGAGGAAACAACCTTA 959
Query 960 TAAGAGTAACGAGAGTCAAGACGAAACGACAATGAAGCTACACATGATTCAGTTGgaaga 1019
|| ||| || |||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 960 TAGGAGCAATGAGACTCAAGACGAAACGACAATGAAGCTACACAAGATTCAGTTGGAAGA 1019
Query 1020 attttggagagctgaagaagaagcgaagaagaaagggaagaggttaagaCTACTAGATAC 1079
||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||
Sbjct 1020 ATTTTGGAGAGCTGAAGAAGAAGCGAAGAAGAAAGGGAAAAGGTTACGATTACTAGATAC 1079
Query 1080 GACCCAAGCAATGTGGCTTAGACCCGATGGTCACCCAAGCCGCTATGGCCATATGCCAGA 1139
||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||
Sbjct 1080 GACCCAAGCTATGTGGCTTAGACCCGACGGTCACCCAAGCCGCTACGGCCATATTCCAGA 1139
Query 1140 GGCCAATGTCATGTTGTACAACGACTGTGTTCACTGGTGCTTGCCCGGTCCTATCGACAA 1199
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1140 GGCCAATGTCACGTTGTACAACGACTGTGTCCACTGGTGCTTGCCCGGTCCTATCGACAA 1199
Query 1200 CCTCAATGACTTCTTGCTCGCTATGCTAAAGAGAGAACAAGACAAAGGATTACT-GGCTC 1258
|||||||||||||||||| |||||||||||||||||| ||||||||||||| || ||| |
Sbjct 1200 CCTCAATGACTTCTTGCTGGCTATGCTAAAGAGAGAAGAAGACAAAGGATT-CTTGGCGC 1258
Query 1259 AAGTTCGGAAAATGCTGTCCTAATGACCTAGCCAAATCAAGTTT 1302
||||||| |||||| ||||||||||||| ||| |||||||||||
Sbjct 1259 AAGTTCGAAAAATGTTGTCCTAATGACCAAGCTAAATCAAGTTT 1302
> AT3G02440.1 | Symbols: TBL20 | TRICHOME BIREFRINGENCE-LIKE 20
| chr3:500804-502229 REVERSE LENGTH=1122
Length=1122
Score = 239 bits (129), Expect = 6e-62
Identities = 311/395 (79%), Gaps = 27/395 (7%)
Strand=Plus/Plus
Query 199 TGCGACATATTCTCGGGAGAATGGGTTCCTAACCCTGAGGCACCTTACTACACCAACACG 258
||||| |||||||| || || ||| | || |||||| | || || |||||||| ||||||
Sbjct 379 TGCGATATATTCTCCGGCGAGTGGATCCCAAACCCTAAAGCCCCGTACTACACAAACACG 438
Query 259 ACGTGCTGGGCGATACACGAACACCAAAACTGCATGAAGTTTGGAAGACCCGAC--ACGG 316
|| ||| |||||||||||||||||||||||||||| |||| ||||||||| || | ||
Sbjct 439 ACATGCAGGGCGATACACGAACACCAAAACTGCATCAAGTATGGAAGACCTGATTTA-GG 497
Query 317 ATTTCATCAAGTGGAAATGGAAACCTTATGGGTGCGAAGATGGCTTGCCAGTTTTTGACC 376
|||||| || |||| |||||||||| | | || || | || || | ||||| |
Sbjct 498 -TTTCATGAAATGGAGATGGAAACCTAAAGAATGTGA---T--CTC-CCTCTGTTTGATC 550
Query 377 CGTTTA-G-GTTTCTTGAGATCGTGAGAGGTAA-AACCATGGCGTTTGTTGGTGACTCAG 433
| || | | |||||| || || || ||||| || || |||||||| ||||||||||| |
Sbjct 551 C-TT-ACGAGTTTCTGGAAATAGTTAGAGG-AACAAGAATGGCGTTCGTTGGTGACTCCG 607
Query 434 TTAGCAGAAACCACATGCAGTCTTTGATCTGCCTTCTCTCTCAGGTTGAGTATCC-GATG 492
|||||||||||||| | ||||||||||||||||| ||||||| ||| || |||| || |
Sbjct 608 TTAGCAGAAACCACGTTCAGTCTTTGATCTGCCTACTCTCTCGGGTGGAACATCCTGAGG 667
Query 493 GATG-CTTC-CGTTAAGGATGACGATTA-TTTCAAACGATGGACATACGAAACATACAAC 549
| || || | | || | || | ||| |||| ||||||||| |||| |||| ||||||
Sbjct 668 G-TGACT-CAC---AAC-AGGA-GTTTAATTTCCAACGATGGAAATACAAAACGTACAAC 720
Query 550 TTCACGATCGCCGCATTTTGGACACCACACTTGGT 584
|||||||||||| ||||||||||| |||| |||||
Sbjct 721 TTCACGATCGCCACATTTTGGACAACACATTTGGT 755
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64055895420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5