BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488438 Length=1302 Score E Sequences producing significant alignments: (Bits) Value AT5G15900.1 | Symbols: TBL19 | TRICHOME BIREFRINGENCE-LIKE 19 |... 2006 0.0 AT3G02440.1 | Symbols: TBL20 | TRICHOME BIREFRINGENCE-LIKE 20 |... 239 6e-62 > AT5G15900.1 | Symbols: TBL19 | TRICHOME BIREFRINGENCE-LIKE 19 | chr5:5189491-5192070 REVERSE LENGTH=1314 Length=1314 Score = 2006 bits (1086), Expect = 0.0 Identities = 1232/1304 (94%), Gaps = 4/1304 (0%) Strand=Plus/Plus Query 1 ATGGAGCTTCTTCATTCTGCAACATTTCCAAGTAAACAAAAGCTACTCATCGTAGTGA-C 59 ||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| | Sbjct 1 ATGGAGCTTGTTCATTCTGCAACATTTCCATGTAAACAAAAGCTACTCATCGCAGTGACC 60 Query 60 AGTTGCCATAACTCTCTTCACCATCATCCCTCTTCTCTACCCTTTTCTTGAAGACCCTAA 119 | |||| | | |||| || |||||||||||||||||||||||||| |||||||||||||| Sbjct 61 A-TTGCTACATCTCTTTTAACCATCATCCCTCTTCTCTACCCTTTGCTTGAAGACCCTAA 119 Query 120 CTTCTTCCTCAAGCAACAACCTCCAAGCCAAAGCAGCATCATCAAGCTCGAAAACGGCGT 179 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 120 CTTCTTCCTCAAGCAACAACCTCCAAGCCAAAGCAGCATCATCAACCTCGAAAACGGTGT 179 Query 180 TGTAACATCACATGAGAGCTGCGACATATTCTCGGGAGAATGGGTTCCTAACCCTGAGGC 239 ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 180 TGTAACATCACATGACAGCTGCGACATATTCTCGGGAGAGTGGGTTCCTAACCCTGAGGC 239 Query 240 ACCTTACTACACCAACACGACGTGCTGGGCGATACACGAACACCAAAACTGCATGAAGTT 299 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 240 ACCTTACTACACCAACACGACGTGCTGGGCGATACACGAACACCAAAATTGCATGAAGTT 299 Query 300 TGGAAGACCCGACACGGATTTCATCAAGTGGAAATGGAAACCTTATGGGTGCGAAGATGG 359 ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| || Sbjct 300 TGGAAGACCCGACACGGATTTCATCAAATGGAAATGGAAACCTTACGGGTGCGAAGACGG 359 Query 360 CTTGCCAGTTTTTGACCCGTTTAGGTTTCTTGAGATCGTGAGAGGTAAAACCATGGCGTT 419 |||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 360 CTTGCCGGTATTTGACCCGGTTAGGTTTCTTGAGATCGTGAGAGGTAAAACCATGGCGTT 419 Query 420 TGTTGGTGACTCAGTTAGCAGAAACCACATGCAGTCTTTGATCTGCCTTCTCTCTCAGGT 479 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 420 TGTTGGTGACTCAGTTAGCAGAAACCACATGCAGTCTTTGATCTGCCTTCTTTCTCAGGT 479 Query 480 TGAGTATCCGATGGATGCTTCCGTTAAGGATGACGATTATTTCAAACGATGGACATACGA 539 ||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 480 TGAATATCCGATGGATGCTTCGGTTAAGAATGACGATTATTTCAAACGATGGACATACGA 539 Query 540 AACATACAACTTCACGATCGCCGCATTTTGGACACCACACTTGGTAAAGTCCAAAGAACC 599 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 540 AACATACAATTTCACGATCGCCGCATTTTGGACACCACACTTGGTTAAGTCCAAAGAACC 599 Query 600 CGACCAGACCCAGACCGAGCATACTGATATTTTCGACCTATACCTCGACGAGGCAGACGA 659 ||||||||||||| || |||||| ||||||||| ||||||||||| || ||||||||||| Sbjct 600 CGACCAGACCCAGCCCAAGCATATTGATATTTTTGACCTATACCTTGATGAGGCAGACGA 659 Query 660 GAGTTGGACAGCCGATATAGGAGATTTTGACTACGTGATTATCTCATCTGGTCACTGGCA 719 |||||||||||||||||||||||||||||||| ||| || ||||| ||||| |||||||| Sbjct 660 GAGTTGGACAGCCGATATAGGAGATTTTGACTTCGTAATCATCTCTTCTGGCCACTGGCA 719 Query 720 TTACCGGCCATCAGTCTACTACGAAAACCGGACAATCACCGGTTGCCATTATTGCCAATT 779 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 720 TTACCGGCCATCAGTCTACTACGAAAACCGGACTATCACCGGTTGCCATTATTGCCAATT 779 Query 780 ACCGAACATAACCGATCTCACAATGTTTTACGGGTATAGAAAAGCGTTTAGAACCGCGTT 839 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 780 ACCGAACATAACCGATCTCACAATGTTTTATGGGTATAGAAAAGCTTTTAGAACCGCGTT 839 Query 840 TAAAGCGATCTTGGACTCGGAAAGCTTCAAAGGGGTAATGTACTTACGAAGTTTTGCACC 899 ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 840 TAAAGCGATCTTGGATTCGGAAAGCTTCAAAGGCGTAATGTACTTACGAAGTTTTGCACC 899 Query 900 GTCGCATTTTGAGGGCGGGTTATGGAACGAAGGAGGAAATTGTTTGAGGAAACAACCTTA 959 ||| |||||||| |||||||| ||||| ||||||||| |||||||||||||||||||||| Sbjct 900 GTCACATTTTGAAGGCGGGTTGTGGAATGAAGGAGGAGATTGTTTGAGGAAACAACCTTA 959 Query 960 TAAGAGTAACGAGAGTCAAGACGAAACGACAATGAAGCTACACATGATTCAGTTGgaaga 1019 || ||| || |||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 960 TAGGAGCAATGAGACTCAAGACGAAACGACAATGAAGCTACACAAGATTCAGTTGGAAGA 1019 Query 1020 attttggagagctgaagaagaagcgaagaagaaagggaagaggttaagaCTACTAGATAC 1079 ||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||| Sbjct 1020 ATTTTGGAGAGCTGAAGAAGAAGCGAAGAAGAAAGGGAAAAGGTTACGATTACTAGATAC 1079 Query 1080 GACCCAAGCAATGTGGCTTAGACCCGATGGTCACCCAAGCCGCTATGGCCATATGCCAGA 1139 ||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct 1080 GACCCAAGCTATGTGGCTTAGACCCGACGGTCACCCAAGCCGCTACGGCCATATTCCAGA 1139 Query 1140 GGCCAATGTCATGTTGTACAACGACTGTGTTCACTGGTGCTTGCCCGGTCCTATCGACAA 1199 ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1140 GGCCAATGTCACGTTGTACAACGACTGTGTCCACTGGTGCTTGCCCGGTCCTATCGACAA 1199 Query 1200 CCTCAATGACTTCTTGCTCGCTATGCTAAAGAGAGAACAAGACAAAGGATTACT-GGCTC 1258 |||||||||||||||||| |||||||||||||||||| ||||||||||||| || ||| | Sbjct 1200 CCTCAATGACTTCTTGCTGGCTATGCTAAAGAGAGAAGAAGACAAAGGATT-CTTGGCGC 1258 Query 1259 AAGTTCGGAAAATGCTGTCCTAATGACCTAGCCAAATCAAGTTT 1302 ||||||| |||||| ||||||||||||| ||| ||||||||||| Sbjct 1259 AAGTTCGAAAAATGTTGTCCTAATGACCAAGCTAAATCAAGTTT 1302 > AT3G02440.1 | Symbols: TBL20 | TRICHOME BIREFRINGENCE-LIKE 20 | chr3:500804-502229 REVERSE LENGTH=1122 Length=1122 Score = 239 bits (129), Expect = 6e-62 Identities = 311/395 (79%), Gaps = 27/395 (7%) Strand=Plus/Plus Query 199 TGCGACATATTCTCGGGAGAATGGGTTCCTAACCCTGAGGCACCTTACTACACCAACACG 258 ||||| |||||||| || || ||| | || |||||| | || || |||||||| |||||| Sbjct 379 TGCGATATATTCTCCGGCGAGTGGATCCCAAACCCTAAAGCCCCGTACTACACAAACACG 438 Query 259 ACGTGCTGGGCGATACACGAACACCAAAACTGCATGAAGTTTGGAAGACCCGAC--ACGG 316 || ||| |||||||||||||||||||||||||||| |||| ||||||||| || | || Sbjct 439 ACATGCAGGGCGATACACGAACACCAAAACTGCATCAAGTATGGAAGACCTGATTTA-GG 497 Query 317 ATTTCATCAAGTGGAAATGGAAACCTTATGGGTGCGAAGATGGCTTGCCAGTTTTTGACC 376 |||||| || |||| |||||||||| | | || || | || || | ||||| | Sbjct 498 -TTTCATGAAATGGAGATGGAAACCTAAAGAATGTGA---T--CTC-CCTCTGTTTGATC 550 Query 377 CGTTTA-G-GTTTCTTGAGATCGTGAGAGGTAA-AACCATGGCGTTTGTTGGTGACTCAG 433 | || | | |||||| || || || ||||| || || |||||||| ||||||||||| | Sbjct 551 C-TT-ACGAGTTTCTGGAAATAGTTAGAGG-AACAAGAATGGCGTTCGTTGGTGACTCCG 607 Query 434 TTAGCAGAAACCACATGCAGTCTTTGATCTGCCTTCTCTCTCAGGTTGAGTATCC-GATG 492 |||||||||||||| | ||||||||||||||||| ||||||| ||| || |||| || | Sbjct 608 TTAGCAGAAACCACGTTCAGTCTTTGATCTGCCTACTCTCTCGGGTGGAACATCCTGAGG 667 Query 493 GATG-CTTC-CGTTAAGGATGACGATTA-TTTCAAACGATGGACATACGAAACATACAAC 549 | || || | | || | || | ||| |||| ||||||||| |||| |||| |||||| Sbjct 668 G-TGACT-CAC---AAC-AGGA-GTTTAATTTCCAACGATGGAAATACAAAACGTACAAC 720 Query 550 TTCACGATCGCCGCATTTTGGACACCACACTTGGT 584 |||||||||||| ||||||||||| |||| ||||| Sbjct 721 TTCACGATCGCCACATTTTGGACAACACATTTGGT 755 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64055895420 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5