BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488439
Length=992
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15910.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1509 0.0
> AT5G15910.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr5:5193111-5195396 FORWARD LENGTH=1100
Length=1100
Score = 1509 bits (817), Expect = 0.0
Identities = 946/1005 (94%), Gaps = 22/1005 (2%)
Strand=Plus/Plus
Query 1 CGATACTTGAGCTACTCAGCTTTAGGGTTTTAAGTGTACGATGTTTAGGTCTCTGATTTG 60
||||||||||||||||||||||||||| ||| | || ||||| ||||||||||||||
Sbjct 64 CGATACTTGAGCTACTCAGCTTTAGGG-TTT-A----AC-ATGTTAAGGTCTCTGATTTG 116
Query 61 GAAACGATCACAAGCATCTTCTTCAACCGTCACGATGTCTTCAATCAGTCAGAGAGGTAA 120
|||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| ||
Sbjct 117 GAAACGATCACAGGCATATTCTTCAGTCGTCACGATGTCTTCAATCAGTCAGAGAGGAAA 176
Query 121 TGAAAGGCTTTTGTCTGAAGCCGCTGGTTCACATTCAAGAGATAATAAGATACTGGTTTT 180
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 177 TGAAAGGCTTTTGTCTGAAGTCGCTGGTTCACATTCAAGAGATAATAAGATATTGGTTTT 236
Query 181 GGGAGGAAATGGTTATGTAGGTTCACACATATGCAAGGAGGCACTGAGACAAGGTTTCTC 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 237 GGGAGGAAATGGTTATGTAGGTTCACACATATGTAAGGAGGCACTGAGACAAGGTTTCTC 296
Query 241 TGTATCTAGTCTTAGCAGGTCTGGAAGATCTTCTCTGCATGATTCGTGGGTGGATGATGT 300
|||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||
Sbjct 297 TGTATCTAGTCTTAGCAGGTCTGGAAGATCTTCTCTTCACGATTCGTGGGTCGATGATGT 356
Query 301 AACCTGGCATCAAGGTGATTTGCTTTCACCCGATTCTCTGAAGCCTGCACTCGAAGGAAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 357 AACCTGGCATCAAGGTGATTTGCTTTCACCCGATTCTCTGAAGCCTGCACTAGAAGGAAT 416
Query 361 TACATCTGTGATCTCATGCGTTGGTGGTTTTGGTTCCAACTCACAAATGGTCAGAATTAA 420
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TACATCTGTGATTTCATGTGTTGGTGGTTTTGGTTCCAACTCACAAATGGTCAGAATTAA 476
Query 421 CGGTACTGCAAACATCAATGCTGTTAATGCTGCAGCAGAACAAGGTGTGAAAAGATTTGT 480
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 477 CGGTACTGCAAACATCAATGCTGTTAAAGCTGCAGCAGAACAAGGTGTGAAGAGATTTGT 536
Query 481 GTATATATCAGCTGCGGATTTTGGTGTCATAAATAACTTGATTCGAGGATATTTCGAAGG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GTATATATCAGCTGCGGATTTTGGTGTCATAAATAACTTGATTCGAGGATATTTCGAAGG 596
Query 541 GAAGAGAGCAACTGAAGCTGAGATTTTGGATAAATTCGGAAACAGAGGAACGGTTTTAAG 600
|||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 597 GAAGAGAGCAACCGAAGCTGAGATTTTGGATAAATTTGGAAACAGAGGTTCGGTTTTAAG 656
Query 601 GCCAGGATTCATACACGGGACTCGTCAGGTCGGTAGCATAAAGCTGCCACTTAGTCTCAT 660
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GCCAGGATTCATACATGGGACTCGTCAGGTCGGTAGCATAAAGCTGCCACTTAGTCTCAT 716
Query 661 TGGAGCTCCTCTCGAAATGGTCTTGAAGCTGTTCCCGAAAGAGGTGACGAAAATTCCTGT 720
||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 717 TGGAGCTCCTCTCGAAATGGTTTTGAAGCTGTTGCCAAAAGAGGTGACGAAAATTCCTGT 776
Query 721 GATCGGGCCACTTTTAATACCTCCGGTCAATGTTAAATCCGTTGCAGGAACAGCGGTAAA 780
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 777 GATCGGGCCACTTTTAATACCTCCGGTCAATGTCAAATCCGTTGCAGCAACAGCGGTAAA 836
Query 781 AGCTGCAGTTGATCCCGAGTTTGCGTCTGGAGTCATCGATGTGTACCGGATTCTTCAACA 840
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 837 AGCTGCAGTTGATCCCGAGTTTGCTTCTGGAGTCATCGATGTGTACCGGATTCTTCAACA 896
Query 841 CGGTCACTGAAAAACAACACC-GTCTTAACAAAGTTTCTCCTTATTACTGTTTTAACTGT 899
|||||||||||| ||||||| |||||||||||||| ||||| | ||| ||||||| |||
Sbjct 897 TGGTCACTGAAAA-CAACACCTGTCTTAACAAAGTT-CTCCTCAATACGGTTTTAAATGT 954
Query 900 TGAATTCAAATGTAACCA-T--C----GTCTCTGGT-T-CTGCTACCAA-TAAACTATGA 949
|||||||||||||||| | | ||||||||| | |||||||||| ||||||||||
Sbjct 955 CAAATTCAAATGTAACCAATAACCATCGTCTCTGGTCTTCTGCTACCAAATAAACTATGA 1014
Query 950 CTTTCGCATATTACA-A-TAGGAGAAAAAATAATGAAAttttttt 992
||||||||||||||| | |||||||| |||||||||||| |||||
Sbjct 1015 CTTTCGCATATTACACAATAGGAGAACAAATAATGAAATCTTTTT 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48576420149
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5