BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488440
Length=1923
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16020.1 | Symbols: GEX3 | gamete-expressed 3 | chr5:5229692... 2957 0.0
> AT5G16020.1 | Symbols: GEX3 | gamete-expressed 3 | chr5:5229692-5232241
FORWARD LENGTH=1926
Length=1926
Score = 2957 bits (1601), Expect = 0.0
Identities = 1773/1858 (95%), Gaps = 3/1858 (0%)
Strand=Plus/Plus
Query 36 CTTCTTCTTCGTCTTCTTCTCCGCAGTCTCTCAATTACAAGACCAAACTGCGACTAAGAA 95
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 54 CTTCTTCTTCGTCTTCTTCTCCGGAGTCTCTCAATTACAAGACCAAACTGCGACTAAGAA 113
Query 96 ATTTGTTCGAATTCTCTCGAAGACACTCATCGGCGATGACGGCAGAGTCTACGCTTGCTC 155
|| ||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 114 ATCTGTTCGAATCCTCTCGAAGATACTCATTGGCGATGACGGCAGAGTCTACGCTTGCTC 173
Query 156 CGACAACGACTTCTTCTCCTTCGAGTCTAACGGATCAATCGCTTGGTCGGTACACATGAA 215
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 AGACAACGACTTCTTCTCCTTCGAGTCTAACGGATCAATCGCTTGGTCGGTACACATGAA 233
Query 216 TTTCAAATGTAACACCGATTTTTCCCCGGTTTACTCTGGTTTCAAGCAGATGCTTGTTCT 275
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||
Sbjct 234 TTTCAAATGTAACACCGATTTTGCCCCGGTTTACTCTGGTTTCAACCAGATGCTTCTTCT 293
Query 276 TGCAGAAAATCGTATCCTGAGAGTTATTTTCCCAAGAAACGGAACCAAATCTGAACCGGA 335
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 294 TGCAGAAAATCGTATCCTGAGAGTCATTTTTCCAAGAAACGGAACCAAATCTGAACCGGA 353
Query 336 ATTGTTCTTCGATCCCGGTGAAACGATTCTTGGTTTCGCGGTTAGCATATCGAGTTATTC 395
||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| |||
Sbjct 354 ATTGTTCTTCGATCCTGGTGAAACGATTCTCGGTTTCGCGGTTAGCGTATCGAGTTCTTC 413
Query 396 CGTTTACATCACCGTTAAGAATCACGGTCTCTACGCTTATAATATGTTTCGGCAGCAACT 455
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CGTGTACATCACGGTTAAGAATCACGGTCTCTACGCTTATAATATGTTTCGGCAGCAACT 473
Query 456 CTGGATTGCAGAGCCTAAAATCGAACGATTCGGATACCGACTTGGATGTCGAAAAGATTA 515
||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 474 CTGGATTGCAGAGCCTAAAATCGAACGATTCGGGTACCGACTAGGTTGTCGAAAAGATTT 533
Query 516 TGATAACTGTACATTCAATTCTCGACCAGTGATTGATTCTTGCGAAGGGAGCATCTATAT 575
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 534 TGATAATTGTACATTCAATTCTCGACCAGTGATTGATTCTTGCGAAGGAAGCATCTATAT 593
Query 576 TTCAAACAATGAAGGAGAACTCTACTCGTTATCTCTCCGTGGCACTTACTACCAATGGAT 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 TTCAAACAATGAAGGAGAACTCTACTCGTTATCTCTCCGTGGCACTTACTACCAATGGAT 653
Query 636 TCAAGATTTTAGTCTAGTGGATCGATTCTTCACTGTTACACCGGGGAATAACGGTTTAGT 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 654 TCAAGATTTTAGTCTAGTGGATCGATTCTTCACTGTTACACCGGGGAATAACGGTCTAGT 713
Query 696 CTACGTCGTTTTTCCTATGAAATCACTCGTTTTCGCATTAGATTCGTTTTCTGGCGACAT 755
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 714 CTACGTCGTTTTTCCTATCAAATCACTCGTTTTCGCATTAGATTCGTTTTCCGGCGACAT 773
Query 756 TCTGTGGCAAAAAACCGTCGGTCCATTGGCAGAAACTTCTGCTTCAGACCCTGTCATTGA 815
||| |||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 774 TCTATGGCAAAAAACCATTGGTCCATTGGCAGAAACTTCTGCTTCAGACCCTGTCATAGA 833
Query 816 CTCAAACAGTTGGGCATCGATTGGTTCACTAGATGGGACATTGTACTCGTTCTCAAGAAC 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 CTCAAACAGTTGGGCATCGATTGGTTCACTAGATGGGACATTGTACTCGTTCTCAAGAAC 893
Query 876 AGGGGAGCTTCATAAGATACCGAAAAACGCAGAAACAGATTCAGTGATCCAAATAGAGCC 935
|||||| ||| |||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 894 AGGGGACCTTTATAAGATACCTAAAAATGCAGAAACAGATTCAGTGATCCAAATAGAGCC 953
Query 936 ATTACTCGATTGCTCGGGCTATGCGGTTTATGTTTCTCAGACAAAACTCGAAGGAAAAAT 995
|||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||
Sbjct 954 ATTACTCGATTGTTCGGGCTATGCGGTTTATGTTTCTCAGACTAAATTCGAAGGAATGAT 1013
Query 996 TGATCATGTTATTGAGGATTACACTTATGTGTCGGCCAAGAAACCAGAAACCGCGGTCTT 1055
|||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1014 CGATCGTGTCATTGAGGATTACACTTATGTGTCGGCCAAGAAACCAGAAACAGCGGTGTT 1073
Query 1056 TTCACTTGTAGTTCCAGAGACAAGATCTATCTGCTGGTCTCAGAGTTACTCTGATCAAAT 1115
|||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1074 TTCACTTGTAGTCCCAGAGACAAGATCTATCTACTGGTCTCAGAGTTATTCTGATCAAAT 1133
Query 1116 TCTGGGTTTGTTATTAGACGAAGATCTACAACATTTTCTGTTGGACGAGAGGATTGTTCT 1175
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1134 TCCGGGTTTGTTATTAGACGAAGATCTACAACATTTTGTGTTGGACGAGAGGATTGCTCT 1193
Query 1176 TGCGTTCGTTGCAGCCTCTAGTTCTGGAAATCCATTTCGATGTCGTTCTAAACACGAAAA 1235
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TGCGTTTGTTGCAGCCTCTAGTTCTGGAAATCCATTTCGATGTCGTTCTAAACACGAAAA 1253
Query 1236 GCTATCATCTAGTTGTTCATTTTCAGAACCAGAGCATCTTGATATCTACATTGGTAACGA 1295
||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1254 GCTGTCATCTAGTTGTTCATTTGCAGAACCAGAGCATCTTGATATCTACATTGGGAACGA 1313
Query 1296 AAGAGCGATAATTTGGTTTTTACTGTTCGAGTTTGTGATTATAGTCCTCTTTGCGGCTCT 1355
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1314 AAGAGCGATCATTTGGTTTTTACTGTTCGAGTTTGTGATTATGGTCCTCTTTGCGGCTCT 1373
Query 1356 TGTGAGGTTCTGTTTTATATTCTGGAAGaaaaaaaaGCTTCAAGATCGTCCCTTCAGTGC 1415
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1374 TGTGAGGTTCTGTTTTATATTCTGGAAGAAAAAGAAGCTTCAAGATCGTCCCTTCAGTAC 1433
Query 1416 TTTCTTGGACAAGCGACGTTTGCTGCACAGGAAGAGTAGAGATATTGATAAAACGATAAC 1475
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1434 TTTCTTGGACAAGCGACGTTTGCTACACAGGAAGAGTAGAGAAATTGATAAAACGATAAC 1493
Query 1476 GAGACTTCAAAGCGAATCAACAGCCAATGAATCCACGGTTGATAAAATCGGTGATTTAAT 1535
||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||| ||
Sbjct 1494 GAGACTTCAAAACGAATCAACGGCCAATGAATCCGCGGTTGATAAAATCGGTGATTTGAT 1553
Query 1536 TCAAGAGAGGGAAAACGTGAGAAGGAAACTCACGTCGACCTATAGTCTTGGAAGAGACAT 1595
|||| ||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||
Sbjct 1554 TCAAAAGAGGGAAAACGTGAAAAGGAAACTCTCGTCGACCTATAGTCTTGGGAGAGACAT 1613
Query 1596 AGATGAGTCAAAGTCTAAGTTAAAAGATTATGTTCTTCCCTTGTACGGCGGAGGTTCTAG 1655
||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1614 AGATGAGTCCAAGTCTAAGTTAAAAGATTATGTTCTTCCCTTGTACGGAGGAAGTTCTAG 1673
Query 1656 AAGCTTCTCTTTCCAAAATAGGGAGAATGAGAGTGTTACGATTTTTCAAACACCACGCGA 1715
||||||||||| || ||||||||| ||||||||| |||||||||||||||||||| ||||
Sbjct 1674 AAGCTTCTCTTACCGAAATAGGGAAAATGAGAGTATTACGATTTTTCAAACACCAAGCGA 1733
Query 1716 TGAGTCATCCTCAGAAGAGAGCTACAGGGACCAACATTATGATGATGATGTAGCTGATGA 1775
|||||||||||||||||||||||| |||||| ||||||||||||||| | |||||||||
Sbjct 1734 TGAGTCATCCTCAGAAGAGAGCTATAGGGACGAACATTATGATGATG-T--AGCTGATGA 1790
Query 1776 CGAACATGATGAAGATGACTTGGACCGTAACCAAAAAGGAAAGTTGCTTGCTCATTCAGA 1835
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1791 TGAACATGATGAAGATGACTTGGACCGTAAGCAAAAGGGAAAGTTGCTTGCTCATTCAGA 1850
Query 1836 GGGTTCTTCCAATGATGGTGACGGTATTGCAAGCAGTAGAAGAAGCATATATTTGAAG 1893
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1851 GGGTTCTTCCAATGATGGTGATGGTATTGCAAGCAGTAGAAGAAGCATATATTTGAAG 1908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95230433865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5