BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488442
Length=1463
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15930.1 | Symbols: PAM1 | plant adhesion molecule 1 | chr5:... 2049 0.0
AT3G02460.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfami... 1027 0.0
> AT5G15930.1 | Symbols: PAM1 | plant adhesion molecule 1 | chr5:5199711-5202452
FORWARD LENGTH=1529
Length=1529
Score = 2049 bits (1109), Expect = 0.0
Identities = 1403/1531 (92%), Gaps = 76/1531 (5%)
Strand=Plus/Plus
Query 1 TATATATATATCTGGAACGTGATGGTACGCGTCTGAATGATCGATGTGATCTCCAAGTTC 60
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
Sbjct 4 TATATATATATCTGGAACGTGATAATACGCGTATGAATGATCGATGTGATCTCCAAGTCC 63
Query 61 AACGTCTCCTTTCTA--T----T-TTCCTT-C--T--A---A---TTC-A-T-A--GCTC 97
||||||||||||||| | | |||||| | | | | ||| | | | ||||
Sbjct 64 AACGTCTCCTTTCTATTTACCGTGTTCCTTCCTTTGAAGTCATTCTTCAATTCATCGCTC 123
Query 98 CATTGTTCTTCAGATTTCAATTTTGCTGGG--A----A-A-T-------T--TTTGATCG 140
|||||||||||||||||||||||||||||| | | | | | ||||||||
Sbjct 124 CATTGTTCTTCAGATTTCAATTTTGCTGGGAAATTTTAGAGTAGGCGACTCCTTTGATCG 183
Query 141 CCTTATTTCATTTCGAAAGTTAAGATTTTGGATACGACCCTCTTGATCTGACACCGGAAT 200
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 184 CCTTATTTCATTTCGAAAGTTGAGATTTTGGATACGACCCTCTTGATCTGACACCGGAAT 243
Query 201 GTTGGTTAGTTAAATGGAGAGGAAACGAACAAAGGACAGTGAACCAAGACCAGTCCCTCT 260
||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||
Sbjct 244 GTTGGTTAGTTAAATGGAGAGAAAAAGAACAAAGGACAGTGAACCAGGACCAGTCCCTCT 303
Query 261 ACTTGTACCGGTTGATAGATTCGGGTTTCTGAAGCAGGAACATGGCAATTCTCCTCAACG 320
|||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||
Sbjct 304 GCTTGTACCGGTTGATAGATTTGGGTTTCTGAAACAGGAACATGGCAGTTCTCCTCAACG 363
Query 321 TTTCACCAAGACTAAATCATCTAGTAACTATGACAAGGAGGAG-AGAAGAGTAACAAAAT 379
||||||||||||||||||||||| ||| ||||| ||||||||| || ||||| |||||||
Sbjct 364 TTTCACCAAGACTAAATCATCTATTAATTATGAGAAGGAGGAGAAG-AGAGTGACAAAAT 422
Query 380 GGAGGAAGATGATTGGAACTGGTGGTAGTGATTGGAAGCATTACGTTAGAAGAAAACCTC 439
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 423 GGAGGAAGATGATTGGAACTGGGGGTAGTGATTGGAAGCATTACGTTAGGAGAAAACCTC 482
Query 440 ATGTTGTCAAGAGGCGGATTCGAAAAGGGATCCCTGACTGCTTAAGGGGTCTCGTTTGGC 499
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 483 ATGTTGTCAAGAGGCGGATTCGAAAAGGGATCCCTGATTGCTTAAGGGGTCTCGTTTGGC 542
Query 500 AATTGATCTCTGGAAGTCGAGACCTTTTGCTTATGAATCCCGGTGTTTATGTGCAACTGG 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 AATTGATCTCTGGAAGTCGAGACCTTTTGCTTATGAATCCCGGTGTTTATGTGCAACTGG 602
Query 560 TGATTTATGAGACGTCAGCATCAGAACTCGATATCATTCGGGATATATCTCGTACTTTCC 619
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 TGATTTATGAGACGTCGGCATCAGAACTCGATATCATTCGGGATATATCTCGTACTTTCC 662
Query 620 CATCGCATGTTTTCTTCCAGAAGAGACATGGACCAGGCCAAAGATCATTATACAATGTTC 679
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 CGTCACATGTTTTCTTCCAGAAGAGACATGGACCAGGCCAAAGATCATTATACAATGTTC 722
Query 680 TAAAAGCATACTCTGTCTATGACAGAGATGTCGGATATGTTCAGGGGATGGGTTTCATAG 739
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 723 TAAAAGCATACTCTGTCTATGACAGAGATGTCGGATATGTTCAGGGAATGGGTTTCATAG 782
Query 740 CCGGTTTGTTGCTTCTTTATATGAGCGAAGAAGATGCATTCTGGTTATTAGTTGCATTAC 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 CCGGTTTGTTGCTTCTTTATATGAGCGAAGAAGATGCATTCTGGTTATTAGTTGCATTAC 842
Query 800 TCAAAGGAGCTGTTCACTCCCCAATAGAAGGATTGTATCAGGCAGGGCTTCCTCTTGTAC 859
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 TCAAAGGAGCTGTCCACTCCCCAATAGAAGGATTGTATCAGGCAGGGCTTCCTCTTGTAC 902
Query 860 AGCAGTATCTGTTACAGTTCGAT-ATGCTGGTAAGAGAACTAATGCCGAAACTAGGAGAA 918
|||| |||||||||||||| ||| | | |||||||||| |||||||| ||||||||||||
Sbjct 903 AGCAATATCTGTTACAGTTTGATCA-GTTGGTAAGAGAGCTAATGCCCAAACTAGGAGAA 961
Query 919 CATTTCACTCAAGAAATGATCAATCCGAGTATGTATGCAAGTCAATGGTTCATAACCGTC 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 CATTTCACTCAAGAAATGATCAATCCGAGTATGTATGCAAGTCAATGGTTCATAACCGTC 1021
Query 979 TTTTCGTATTCATTTCCTTTCCATTCGGCACTACGAATCTGGGATGTGTTTCTAGCTGAG 1038
|||||||||||| ||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 1022 TTTTCGTATTCACTTCCTTTCCATTCAGCGCTACGAATTTGGGATGTGTTTCTAGCTGAG 1081
Query 1039 GGTGTTAAGATCGTGTTCAAAGTTGGTTTAGCGTTATTGAAGCATTGCCATGATGATTTG 1098
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1082 GGTGTTAAAATCGTGTTCAAAGTCGGTTTAGCATTATTGAAGCATTGCCATGATGATTTG 1141
Query 1099 TTGAAATTGCCATTTGAGGAACTCATGCATGCTCTGAGGAATTTCCCTGAAGATGCCATG 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 TTGAAATTGCCATTTGAGGAACTCATGCATGCTCTGAGGAATTTCCCTGAAGATGCCATG 1201
Query 1159 GATCCTGATACTTTGCTTCCATTGGCTTATTCCATTAAGGTATCAAAGCGTTTGGAAGAA 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 GATCCTGATACTTTGCTTCCATTGGCTTATTCCATTAAGGTATCAAAGCGTTTGGAAGAA 1261
Query 1219 ATGAAACAGGATTGTGACAAGGCCGTAT-CTAAACCGGCTCAAACGGCCAAACCGGTTTA 1277
|||||||||||||||||||||||||| | |||||||| |||||||||||||| |||||
Sbjct 1262 ATGAAACAGGATTGTGACAAGGCCGT-TGCTAAACCGACTCAAACGGCCAAATCGGTTCG 1320
Query 1278 ACAATAGAGTTTGATATTCTTGAACCGAATCAAACCGGAAACCGAATTCTCGAAGATTCT 1337
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1321 ACAATAGAGTTTGATATTCTTGAACCGAATCAAACCGGAAAGTGGATTCTCGAAGATTCT 1380
Query 1338 TCTCATTCTTTTTGTGCAAATTTTAT----------------ACAACTCGTGTGAAAAGT 1381
||||||| ||| ||||||||||||| ||||||||||||||||
Sbjct 1381 TCTCATTATTT--GTGCAAATTTTATCTTTCTCTCTTTTTTTACAACTCGTGTGAAAAC- 1437
Query 1382 AA-A-AACAATAGAACTTTT-TCAAAATATATTTCGACTCAACT--TTTAGATTCTCCTT 1436
|| | || ||| | ||||| | |||||||||||||||||||| |||||||||| |||
Sbjct 1438 AATAGAAGAATT-A-CTTTTGTAAAAATATATTTCGACTCAACAACTTTAGATTCTTCTT 1495
Query 1437 TCTTTTGGGCAA--AA--GTCAAATTTGAGC 1463
|||||| || || || |||||||||||||
Sbjct 1496 TCTTTTTGGTAATGAAAAGTCAAATTTGAGC 1526
> AT3G02460.1 | Symbols: | Ypt/Rab-GAP domain of gyp1p superfamily
protein | chr3:505434-508428 FORWARD LENGTH=1896
Length=1896
Score = 1027 bits (556), Expect = 0.0
Identities = 891/1049 (85%), Gaps = 37/1049 (4%)
Strand=Plus/Plus
Query 204 GGTTAGTTA-AATGGAG-AGGAAACGAAC---AAA-GGACAGTGAACCAAGACCAGTCC- 256
|||||| || ||| ||| || ||| |||| ||| || ||||||| || |||||| ||
Sbjct 489 GGTTAG-TAGAAT-GAGTAGAAAAAGAACGGAAAATGG-CAGTGAATCAGGACCAG-CCA 544
Query 257 C-TCTACTTGTACCGGTTGATAGATTCGGGTTTCTGAAGCAGGAACATGGCAATTCTCCT 315
| ||| | ||| || || ||||||||||||||||| ||||| ||||||| |||||| |||
Sbjct 545 CTTCT-CATGTTCCTGTGGATAGATTCGGGTTTCTCAAGCAAGAACATGCCAATTCGCCT 603
Query 316 CAACGTTTCACCAAGACT-AAA-T-CATC-T--AGT-AACTATGACAAG-GAGGAGAG-A 366
| ||||| | |||| || ||| | |||| | | | | | ||||| || |||||||| |
Sbjct 604 GAGCGTTTTAGCAAGTCTAAAACTACATCATCCACTGATC-ATGAC-AGAGAGGAGAGAA 661
Query 367 AGAGTAACAAAATGGAGGAAGATGATTGGAACTGGTGGTAGTGATTGGAAGCATTACGTT 426
|| || | ||||||||||||||||||||| ||| || ||||||||||||||||| |||
Sbjct 662 AG-GTGAGAAAATGGAGGAAGATGATTGGGGTTGGAGGGAGTGATTGGAAGCATTATGTT 720
Query 427 AGAAGAAAACCTCATGTTGTCAAG-AGGCGGATTCGAAAAGGGATCCCTGACTGCTTAAG 485
|| ||||||||| |||||||| || ||||| || ||||||||||||||||| |||||| |
Sbjct 721 AGGAGAAAACCTAATGTTGTC-AGAAGGCGTATACGAAAAGGGATCCCTGATTGCTTACG 779
Query 486 GGGTCTCGTTTGGCAATTGATCTCTGGAAGTCGAGACCTTTTGCTTATGAATCCCGGTGT 545
||||| |||||||| || ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 780 AGGTCTTGTTTGGCAGTTAATCTCAGGAAGTCGAGACCTTTTGCTTATGAATCCTGGTGT 839
Query 546 TTATGTGCAACTGGTGATTTATGAGACGTCAGCATCAGAACTCGATATCATTCGGGATAT 605
||||| |||| ||||||||||||| || || |||||||| || ||||||||||| || ||
Sbjct 840 TTATGAGCAATTGGTGATTTATGAAACATCTGCATCAGAGCTTGATATCATTCGAGACAT 899
Query 606 ATCTCGTACTTTCCCATCGCATGTTTTCTTCCAGAAGAGACATGGACCAGGCCAAAGATC 665
||| |||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||
Sbjct 900 ATCCCGTACTTTCCCATCACATGTTTTCTTTCAGAAGAGACATGGACCTGGGCAAAGATC 959
Query 666 ATTATACAATGTTCTAAAAGCATACTCTGTCTATGACAGAGATGTCGGATATGTTCAGGG 725
|| |||||||| || || |||||||| || |||||||||||||||||||||||||||||
Sbjct 960 CTTGTACAATGTCCTTAAGGCATACTCAGTTTATGACAGAGATGTCGGATATGTTCAGGG 1019
Query 726 GATGGG-TTTCATAGCCGGTTTGTTGCTTCTTTATATGAGCGAAGAAGATGCATTCTGGT 784
|||||| ||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1020 GATGGGGTTT-ATAGCCGGTTTGTTGCTTCTCTATATGAGCGAAGAAGATGCCTTCTGGT 1078
Query 785 TATTAGTTGCATTACTCAAAGGAGCTGTTCACTCC-CCAATAGAAGGATTGTATCAGGCA 843
|||||||||||||||| |||||||||||||| | | ||||| |||||| ||||||| |||
Sbjct 1079 TATTAGTTGCATTACTTAAAGGAGCTGTTCA-TGCTCCAATGGAAGGACTGTATCATGCA 1137
Query 844 GGGCTTCCTCTTGTACAGCAGTATCTGTTACAGTTCGATATGCT-GGTAAGAGAACTAAT 902
|||||||| ||||||||||| || ||||| ||||| || | ||| ||||| ||| |||||
Sbjct 1138 GGGCTTCCCCTTGTACAGCAATACCTGTTTCAGTTAGAAA-GCTTGGTAAAAGAGCTAAT 1196
Query 903 GCCGAAACTAGGAGAACATTTCACTCAAGAAATGATCAATCCGAGTATGTATGCAAGTCA 962
||||| || ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1197 TCCGAAGCTCGGAGAACATTTTACTCAAGAAATGATTAATCCGAGTATGTATGCAAGTCA 1256
Query 963 ATGGTTCATAACCGTCTTTTCGTATTCATTTCCTTTCCATTCGGCACTACGAATCTGGGA 1022
||||||||| |||||||| || || ||||||||||||| || ||| ||||| || |||||
Sbjct 1257 ATGGTTCATCACCGTCTTCTCATACTCATTTCCTTTCCCTTTGGCTCTACGGATATGGGA 1316
Query 1023 TGTGTTTCTAGCTGAGGGTGTTAAGATCGTGTTCAAAGTTGGTTTAGCGTTATTGAAGCA 1082
||||||||| | ||||||||||| |||||||||||||| || ||||| || | ||| |
Sbjct 1317 TGTGTTTCTCTCCGAGGGTGTTAAAATCGTGTTCAAAGTGGGCTTAGCATTGCTCAAGTA 1376
Query 1083 TTGCCATGATGATTTGTTGAAA-TTGCCATTTGAGGAACTCATGCATGCTCTGAGGAA-T 1140
|||||| ||||| ||| | ||| || || |||||| |||| || |||||||||| || |
Sbjct 1377 TTGCCAAGATGAGTTGGT-AAAGTTACCGTTTGAGAAACTAATACATGCTCTGAA-AACT 1434
Query 1141 TTCCCTGAAGATGCCATGGATCCTGATACTTTGCTTCCATTGGCTTATTCCATTAAGGTA 1200
||||| ||||| || ||| |||| ||||| ||||||||||||||||| || || ||||||
Sbjct 1435 TTCCCGGAAGACGCAATGAATCCGGATACCTTGCTTCCATTGGCTTACTCTATCAAGGTA 1494
Query 1201 TCAAAGCGTTTGGAAGAAATGAAACAGGA 1229
|||||||||||||||||| ||| || |||
Sbjct 1495 TCAAAGCGTTTGGAAGAACTGACACTGGA 1523
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72138183165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5