BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488448
Length=2420
Score E
Sequences producing significant alignments: (Bits) Value
AT5G15980.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 3517 0.0
AT3G02490.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1430 0.0
> AT5G15980.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:5213081-5215620 FORWARD LENGTH=2540
Length=2540
Score = 3517 bits (1904), Expect = 0.0
Identities = 2283/2459 (93%), Gaps = 53/2459 (2%)
Strand=Plus/Plus
Query 1 AAATCAAAATCCTCACTAAAACCCTAACATTTCCCAGAGCTTCGCAATCGCTGTTCCTCC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 47 AAATCAAAATCCTCACTAAAACCCTAACATTTCCCAGAGCTTCGCAATCGCTGTTCTTCA 106
Query 61 GTCT--C-TCGTTTCT--TC-CTAAAGGATCAAGCTTTT-TGATTCAGATCAAGTCCA-A 112
|||| | || ||| | | ||||||||||||||||| | ||||||||||| ||||
Sbjct 107 GTCTCGCTTC-TTTGTAAACTGTAAAGGATCAAGCTTTTCT-ATTCAGATCAAATCCACT 164
Query 113 TAACCGATAGCCTTTGGTATTTTCGGTAACCCAGATCAAATCCGAGATGAGATATCAACA 172
| | | ||| ||||| || ||||| |||||||| |||||||||||||||||||||||||
Sbjct 165 TCA-CTATACCCTTTTTTAGTTTCGTTAACCCAGCTCAAATCCGAGATGAGATATCAACA 223
Query 173 ATGGCGATTGCTGCTTCTTCGTACCTACCATCGATCTCA---T-C----CT-TCTCCTTG 223
|||||||||| |||||||||| | ||||||||| ||||| | | || ||||||||
Sbjct 224 ATGGCGATTGATGCTTCTTCGAAGCTACCATCGTTCTCATCTTCCTTATCTATCTCCTTG 283
Query 224 TTCTCAGGTAACCTCCATTTCAACGCGATCTTTCTCTTCTTTCATTCACCTACGTTCTGG 283
|||||||||||||||||||||| ||||||||||||||||||||||||| | | ||||
Sbjct 284 TTCTCAGGTAACCTCCATTTCATCGCGATCTTTCTCTTCTTTCATTCA-C--C---CTGG 337
Query 284 GATCGGAGCTTTGCAACAAAGCGAACAACTTGGTTCCTTACGATCCCCAATGAAGAGCTC 343
||||||||||||||||||||| ||||||||| || |||||||||||||||||| ||||||
Sbjct 338 GATCGGAGCTTTGCAACAAAGTGAACAACTTTGTCCCTTACGATCCCCAATGACGAGCTC 397
Query 344 TGG-ATCCTTTGGGATATCAGTGGGTCGAAGCTTCTCGTCTGAGCCTGCGGTTGAAGAGA 402
||| | ||| | || |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 398 TGGCA-ACTTAGTGAAATCAGTGGGTCGAAGCTTCTCGTCCGAGCCTGCGGTTGAAGAGA 456
Query 403 AATCTTCTGCTGAGGTTATCGTGATTGATATCTTCAGCAGATTGAGTGGTGAGGATGATA 462
||||||||||||||| || |||||||||||| || || |||||||||||||||||||| |
Sbjct 457 AATCTTCTGCTGAGGCTACCGTGATTGATATTTTTAGTAGATTGAGTGGTGAGGATGAGA 516
Query 463 TTAGGAAAGAGTTGGAATCGAGTGATGTAGTGATTAGCCAGGACTTAGCTTTGAAGGTTT 522
||||||| |||||||||||||||| ||||||||||||||| || ||||||||||||||||
Sbjct 517 TTAGGAAGGAGTTGGAATCGAGTGGTGTAGTGATTAGCCAAGATTTAGCTTTGAAGGTTT 576
Query 523 TGAGAAAGCTCGAATCAAACCCCGATGTTGCGAAAAGGTTTTTCCAGTGGATTAAGGAGG 582
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 577 TGAGAAAGCTCGAATCAAACCCTGATGTTGCCAAAAGTTTTTTCCAGTGGATTAAGGAGG 636
Query 583 CTTCTCCTGAGGAACTTAGCTCGAAGAACTATAACATGATGCTGCGTATTCTGGGTGGTA 642
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 637 CTTCTCCTGAGGAACTTAGCTCGAAGAACTATAACATGATGCTGCGGATTCTGGGTGGTA 696
Query 643 ATGGACTTGTCAATGAGTTTTGGGGGTTGGTTGATGTGATGAAGAAGAAAGGACATGGTT 702
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 697 ATGGACTTGTTGATGAGTTTTGGGGGTTGGTTGATGTGATGAAGAAGAAAGGGCATGGTT 756
Query 703 TATCGGCTAATGTTAGGGATAAAGTAGGTGAGAAATTTCAGAAAGATGGGCTGGAGAGTG 762
|||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 757 TATCGGCTAATGTTAGAGATAAAGTGGGTGACAAATTTCAGAAAGATGGGCTGGAGAGTG 816
Query 763 ATTTGGTGCGACTTAGAAAGTTTTTTGCTTCAGATTGTTTAGATAGTTCGGCGGAGAATG 822
||||| || | || |||||| ||||| |||||||||||||||||| ||||||||||||||
Sbjct 817 ATTTGCTGAGGCTGAGAAAGCTTTTTACTTCAGATTGTTTAGATAATTCGGCGGAGAATG 876
Query 823 TTTGCGATAGGGTGTGTAAGATTGTGATGAAGGAAGAATGGGGTGATGATGTGGAGAAAC 882
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 877 TTTGCGATAGGGTGTGTAAGATTGTGATGAAGGAAGAATGGGGTGATGATGTAGAGAAAC 936
Query 883 GGGTGAGAGATTTGAATGTTGAGTTTAAGAGTGATTTAGTGAAGATGATTGTGGAAAGTC 942
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 937 GGGTAAGAGATTTGAATGTTGAGTTTAAGAGTGATTTAGTGAAGATGATTGTGGAACGTC 996
Query 943 TTGATGTTGTACCTAGGAAAGCTTTGTTGTTCTTTCGGTGGATTGATGAGTCTGGTCTTT 1002
||||||||| ||| |||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct 997 TTGATGTTGAACCCAGGAAAGCTTTGTTGTTCTTCCGGTGGATTGATGAGTCTGATCTCT 1056
Query 1003 TTAAGCATGATGAGAAAACTTATAATGCTATGGCTAGGGTTTTGGGAAAAGAGAAATTTC 1062
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1057 TTAAGCATGATGAGAAAACCTATAATGCTATGGCTAGGGTTTTGGGAAAAGAGAAGTTTC 1116
Query 1063 TCGATAGATTTCAGAACATCGTTGAAGAAATGAGGAGTGTTGGTTATGAAGTGGAAATAG 1122
| ||||||||||||||||| || | |||||||||||||| ||||||||||||||||||||
Sbjct 1117 TTGATAGATTTCAGAACATTGTAGTAGAAATGAGGAGTGCTGGTTATGAAGTGGAAATAG 1176
Query 1123 AGACTTATGTTAGAGTTTCAACAAGGTTCTGCCAGACTAAATTGATCAAGGAAGCTGTTG 1182
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1177 AGACTTATGTTAGAGTTTCAACGAGGTTCTGCCAGACTAAATTGATCAAGGAAGCTGTTG 1236
Query 1183 ACTTGTTTGAGATTGCTATGGCA-G--GTAGTAGTAGTAACAAACCCACCCCACACTGCT 1239
|||||||||||||||| |||||| | |||||||||||||||| ||||||||||||||||
Sbjct 1237 ACTTGTTTGAGATTGCAATGGCAGGTAGTAGTAGTAGTAACAACCCCACCCCACACTGCT 1296
Query 1240 TCTGTTTGTTGCTCAAGAAAATTGTCACTGCCAAGATTCTAGATATGGATTTGTTTTCAA 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 TCTGTTTGTTGCTCAAGAAAATTGTCACTGCCAAGATTCTAGATATGGATTTGTTTTCAA 1356
Query 1300 GAGCTCTGAAAGCTTATACCAGAAATGGTAATGCTATGACGGATTCCTTGCTAAAATCCG 1359
||||| |||||| |||||||| ||||||||||||| |||||||||||||||| ||||| |
Sbjct 1357 GAGCTGTGAAAGTTTATACCAAAAATGGTAATGCTTTGACGGATTCCTTGCTGAAATCTG 1416
Query 1360 TCTTAAAGTCCTTGAGAAGCGTGGATAGGGTTGAACTGAGCACTGAGCTGTTGAAAGAAA 1419
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1417 TCTTAAAGTCCTTGAGAAGCGTGGATAGGGTTGAACAGAGCAATGAGCTGTTGAAAGAAA 1476
Query 1420 TGAAGAAAGGAGGTTATGTTCCTAGTGGTGATATGCAGAGCATGATTGCATCAAGTCTTA 1479
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1477 TGAAGAGAGGAGGCTATGTTCCTAGTGGTGATATGCAGAGCATGATTGCATCAAGTCTTA 1536
Query 1480 GTCGTAAGGGAAAGAAGGATGAAGCTGATGAATTTGTAGACTTTATGGAAGCATCCGGAA 1539
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1537 GTCGTAAGGGAAAGAAGGACGAAGCTGATGAATTTGTAGACTTTATGGAATCATCCGGAA 1596
Query 1540 ATAATCTAGATGACAAGGCAATGGCGTCTCTTGTTGAAGGGTATTGTGATTCTGGGGATC 1599
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1597 ACAATCTAGATGACAAGGCAATGGCGTCTCTTGTTGAAGGGTATTGTGATTCCGGGAATC 1656
Query 1600 TTGATGAAGCTTTAGTGTGTTTCGAGAAAATGGTTGGAAACGCGGCAGCCTTCTATGCCG 1659
||||||||||||||||||||||||||||||||||||||||| ||| || || |||||| |
Sbjct 1657 TTGATGAAGCTTTAGTGTGTTTCGAGAAAATGGTTGGAAACACGGGAGTCTCCTATGCTG 1716
Query 1660 ATTATGCATTTGAGAAGTTGGTTCTTGCTTATTGCAACAAGAATCAAGTAAGAGACGCAT 1719
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1717 ATTATTCATTTGAGAAGTTGGTTCTTGCTTATTGCAACAAGAATCAAGTAAGAGATGCAT 1776
Query 1720 ACAAGCTTTTGAGTGCACAAGT-ACAGAAAAATCAGCTGAAACCTCGTCATAGCACGTAC 1778
|||||||||||||||||||||| || ||||||||| |||||||||||||||||||| |||
Sbjct 1777 ACAAGCTTTTGAGTGCACAAGTAAC-GAAAAATCAACTGAAACCTCGTCATAGCACATAC 1835
Query 1779 AAAATCTTGGTGACGAATCTGTTGATAAAGAAGATTGCAAGGGATGGTGGGTTTGAAGAA 1838
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1836 AAAAGCTTGGTGACGAATCTGTTGACGAAGAAGATTGCAAGGGATGGTGGGTTTGAAGAA 1895
Query 1839 GCTTTGAGTCTTCTACCGATAATGAAAGATCACGGGTTCCCTCCTTTCATTGACCCTTTC 1898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1896 GCTTTGAGTCTTCTACCGATAATGAAAGATCACGGGTTCCCTCCTTTCATTGACCCTTTC 1955
Query 1899 ATGAGTTACTTCTCAACAACTGGAAAAAGCACAGAAGCTCTCGGtttttttAAGGCTATG 1958
||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1956 ATGAGTTACTTCTCATCAACTGGAAAAAGCACTGAAGCTCTCGGTTTTTTGAAGGCTATG 2015
Query 1959 ACCTCGAAGAACTTTCCATCTATGTCAGTGGTTCTGCGTGTATTCGAAACTATGATGAAG 2018
|||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 2016 ACCTCGAATAACTTTCCATATATATCAGTGGTTCTGCGTGTATTCGAAACTATGATGAAG 2075
Query 2019 TCTGCAAGACACAGTGAAGCACAAGATTTACTCTCTCTGTGCCCAAACTATATCCGTAAC 2078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2076 TCTGCAAGACACAGTGAAGCACAAGATTTACTCTCTCTGTGCCCAAACTATATCCGTAAT 2135
Query 2079 AATCCGGATGTTCTAGAACTCTTCAATACCATGAAACCTAACGAGTCTACTGTAGAAAAA 2138
|||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 2136 AATCCGGATGTTCTAGAACTCTTCAATACCATGAAACCCAACGAATCTGCTGTAGAAAAA 2195
Query 2139 CCTTTGGCTGCTTCTGCTTAGCTCCAGTTTTAGTTTACATTCCTCCCAAGTCTTTTTGGT 2198
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 2196 CCTTTGGCTGCTTCTGCTTAGCTCCAGTTTTAGTTTACATTCCTTC-AAGTCTTTTTGGT 2254
Query 2199 TTCTGGGGATTTGATTCTAA-AATTTTGGTCAGAAATATTTCCCGCTGTTCCCTTTTGTT 2257
||||||| ||||||||| || ||||| || ||||| ||||||| ||||||||||||||||
Sbjct 2255 TTCTGGGCATTTGATTCAAATAATTT-GGCCAGAA-TATTTCCTGCTGTTCCCTTTTGTT 2312
Query 2258 TACATGTA--AC--ACCATTCACCAGTTAACTGTCTTCATCAACCTGGTGCACTGGCAAA 2313
|||||||| || |||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 2313 TACATGTATCACTCACCAGTCACCAGTTAACTTTCTTCATCAACCTGGTGCACTGGCAAA 2372
Query 2314 -TAATTTTAAGGTACTATGTTCTTTTATTTTCCACTTGCTTATCATCTTATGCTA-T-G- 2369
|||||||||||||||||||| |||||| ||||||||||||||||||||||||| | |
Sbjct 2373 ATAATTTTAAGGTACTATGTTTTTTTATATTCCACTTGCTTATCATCTTATGCTTCTTGG 2432
Query 2370 C-C----ATGGATTGTTCCGAGTATCAT--T-ATTTGTTAACAAGATCTTTCTGTAACT 2420
| | ||||||||||||| ||||||| | ||||||||||||||||| |||||||||
Sbjct 2433 CTCTGCCATGGATTGTTCCGTGTATCATCATTATTTGTTAACAAGATCTGTCTGTAACT 2491
> AT3G02490.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:513525-515925 FORWARD LENGTH=2401
Length=2401
Score = 1430 bits (774), Expect = 0.0
Identities = 1484/1822 (81%), Gaps = 68/1822 (4%)
Strand=Plus/Plus
Query 369 CGAAGCTTCTCGTCTGAGCCTGCGGTTGAAGAGAAATCTT-CTGCTGAGGTTATCGTGAT 427
||| |||| || |||||| ||||| | ||||||||| ||| |||||||| | | |||||
Sbjct 278 CGACGCTTTTCATCTGAGTCTGCGATAGAAGAGAAA-CTTCCTGCTGAGACTGTTGTGAT 336
Query 428 TGATATCTTCAGCAGATTGAGTGGTGAGGATGATATTAGGAAAGAGTTGGAATCGAGTGA 487
|||| | || |||||||||| |||| ||||||| |||| ||||||| |||| |||| |||
Sbjct 337 TGATGTTTTTAGCAGATTGAATGGTAAGGATGAGATTACGAAAGAGCTGGATTCGAATGA 396
Query 488 TGTAGTGATTAGCCAGGACTTAGCTTTGAAG-GTTTTGA-GAAAGCTCGAATCAAACCCC 545
||| ||||||||||| || ||||| ||| || ||| ||| | || || ||||||| |||
Sbjct 397 TGTTGTGATTAGCCATGAATTAGCATTG-AGAGTTCTGAGGGAA-CTTGAATCAAGCCCT 454
Query 546 GATGTTGCGAAAAGGTTTTTCCAGT-GGATTAAGGAGGCTTCTCCTGAGGAACTTAGC-T 603
||||||||| ||||||||| | | || || |||||||| |||| | ||||| | |
Sbjct 455 GATGTTGCGGGGAGGTTTTTCAAATGGGGTT-TGGAGGCTTATCCTCAAAAACTT-TCTT 512
Query 604 CGAAGAACTATAACATGATGCTGCGTATTCTGGGTGGTAATGGACTT-GTCAATGAGTTT 662
| |||| ||||||| ||||||||||||| | |||| ||||||| || || ||||||||
Sbjct 513 CCAAGAGTTATAACACGATGCTGCGTATTTTTGGTGTTAATGGA-TTAGTTGATGAGTTT 571
Query 663 TGGGGGTTGGTTGATG-TGATGAAGAAGAAAGGACATGGT-TTATCGGCTAATGTTAGGG 720
||| |||||||||||| | |||||||||||||| |||||| || || |||||||||||||
Sbjct 572 TGGAGGTTGGTTGATGAT-ATGAAGAAGAAAGGGCATGGTGTT-TCAGCTAATGTTAGGG 629
Query 721 ATAAAGTAGGTGAGAAATTTCAGAAAGATGGGCTGGAGAGTGATTTGGTGCGACTTAGAA 780
| | ||| ||||| || ||| |||||||||| || || | |||||||| | | || | ||
Sbjct 630 ACAGAGTCGGTGACAAGTTTAAGAAAGATGGACTAGAAAATGATTTGGAGAGGCTGA-AA 688
Query 781 -AGTTTTTTGCTTCAGATTGTTTAGATAGTTCGGCGGAGAATGTTTGCGATAGGGTGTGT 839
|| | |||||||||| || | | |||| || | || || |||||| |||||||||||
Sbjct 689 GAGCTATTTGCTTCAGGTTCTATGGATAACTCTGTTGACAAGGTTTGCAATAGGGTGTGT 748
Query 840 AAGATTGTGATGAAGGAAGAATGGGGTGATGATGTGGAGAAACGGGTGAGAGATTTGAAT 899
||||||||||||||||||| ||||||| |||||| ||||||| | | || ||||||||
Sbjct 749 AAGATTGTGATGAAGGAAGTGTGGGGTGCTGATGTAGAGAAACAGCTAAGGGATTTGAA- 807
Query 900 G-TTGAGTTTAAGAGTGATTTAGTGAAGATGATTGTGGAAAGTCTTGATGTTGTA-CCTA 957
| | |||||||| |||||| | || |||||| || |||||| ||||| | || | || |
Sbjct 808 GCTCGAGTTTAAAAGTGATGTGGTAAAGATGGTTTTGGAAAAACTTGACG-TGGATCCGA 866
Query 958 GGAAAGCTTTGTTGTTCTTTCGGTGGATTGATGAGTCTGGTCTTTTTAAGCATGATGAGA 1017
|||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||
Sbjct 867 GGAAAGCTTTGTTGTTCTTTAGGTGGATTGATGAGTCTGGAAGTTTTAAACATGATGAGA 926
Query 1018 AAACTTATAATGCTATGGCTAGGGTTTT-GGGAAAAGAGAAATTTCTCGATAGATTTCAG 1076
| || |||||||||||||| |||||||| ||| |||||||| ||||| ||||| ||||||
Sbjct 927 AGACGTATAATGCTATGGCCAGGGTTTTAGGG-AAAGAGAAGTTTCTTGATAGGTTTCAG 985
Query 1077 AACATCG-TTGAAGAAATGAGGAGTGTTGGTTATGAAG-TGGAAATAGAGACTTATGTTA 1134
|||| | | |||||||| ||||||| |||||| | || ||||||| |||||||||||||
Sbjct 986 CACAT-GATAGAAGAAATTAGGAGTGCTGGTTACG-AGATGGAAATGGAGACTTATGTTA 1043
Query 1135 GAGTTTCAACAAGGTTCTGCCAGACTAAATTGATCAAGGAAGCTGTTGACTTGTTTGAGA 1194
| |||||| |||||||||| ||||||||| |||| || ||||||||||| |||||||||
Sbjct 1044 GGGTTTCAGCAAGGTTCTGTCAGACTAAAATGATTAAAGAAGCTGTTGAGTTGTTTGAGT 1103
Query 1195 TTGCTATGGCAGGTAGTAGTAGTAACAAACCCACCCCACACTGCTTCTGTTTGTTGCTCA 1254
|||| ||||||||||| | ||| |||| ||||||||||||||||| | |||| ||||||
Sbjct 1104 TTGCAATGGCAGGTAGCATTAGCAACACACCCACCCCACACTGCTGCAGTTTACTGCTCA 1163
Query 1255 AGAAAATTGTCACTGCCAAG-ATTCTAGATATGGATTTGTTTTCAAGAGCTCTGAAAGCT 1313
|||||||||||||||| ||| | | | || ||||| || ||| ||||| || ||||||||
Sbjct 1164 AGAAAATTGTCACTGCAAAGAAAT-TGGACATGGACTTATTTACAAGAACTTTGAAAGCT 1222
Query 1314 TATACCAGAAATGGTAATGCTATGACGGATTCCT-TGCT--AAAATCCGTCTTAAAGTCC 1370
||||| | ||||| || | | || |||| | | |||| || || ||| | |||||
Sbjct 1223 TATACTGGGAATGGCAACGTTGTGCCGGA-TGTTATGCTGCAACAT--GTCCTCAAGTCT 1279
Query 1371 TTGAGAAGCGTGGATAGGGTTGAACTGAGC-ACTGAGCTGTTGAAAGAAATGAA-GAAAG 1428
||||||||||| |||||| ||| || |||| || ||| ||||||||| ||||| | |||
Sbjct 1280 TTGAGAAGCGTTGATAGGTTTGGACAGAGCAAC-GAGGTGTTGAAAGCGATGAACG-AAG 1337
Query 1429 GAGGTTATGTTCCTAGTGGTGATATGCAGAGCATGATTGCATCAAGTCTTAGTCGTAAGG 1488
| || ||||||||||| |||||| ||||||| ||||||||||| | |||||||||||||
Sbjct 1338 GTGGATATGTTCCTAGCGGTGATTTGCAGAGTGTGATTGCATCAGGACTTAGTCGTAAGG 1397
Query 1489 GAAAGAAGGATGAAGCTGATGAATTTGTAG-ACTTTATGGAAGCATCCGGAAATAATCTA 1547
| ||||| |||||||| | ||| |||| | ||||||||||||| || ||||| || ||
Sbjct 1398 GCAAGAAAGATGAAGCAAACGAACTTGT-GAACTTTATGGAAGCTTCTGGAAACCATTTA 1456
Query 1548 GATGACAAGGCAATGGCGTCTCTT-GTTGAAGGGTATTGTGATTCTGGGGATCTTGATGA 1606
||||| || |||||||| ||| || ||||||||| | |||||| || ||||| || ||
Sbjct 1457 GATGATAAAGCAATGGCATCT-TTAGTTGAAGGGCACTGTGATGCTAAAGATCTCGAAGA 1515
Query 1607 AGCTTTAGTGTGTTTCGAGAAAATGGTT-GGAAACGCGGCAGCCTTC-TATGCCGATTAT 1664
||||| || ||||||| |||| ||| || ||||| | || || | || ||||| | ||||
Sbjct 1516 AGCTTCAGAGTGTTTCAAGAAGATGATTGGGAAA-GAGGGAGTC-TCTTATGCAGGTTAT 1573
Query 1665 GCATTTGAGAAGTTGGTTCTTGCTTATTGCAACAAG-AATCAAGTAAGAGACGCATACAA 1723
||||||||||||||||| ||||||||||||||| || ||| | |||||| | ||||||
Sbjct 1574 GCATTTGAGAAGTTGGTACTTGCTTATTGCAAC-AGTTTTCAGGCAAGAGATGTATACAA 1632
Query 1724 GCTTTTGAGTGCA-CAAGTACAGA-AAAATCAGCTGAAACCTCGTCATAGCACGTACAAA 1781
|||||| |||| | | ||| | | |||||||| |||||||| | || || || ||||||
Sbjct 1633 GCTTTTCAGTG-AGCTAGT-GAAACAAAATCAGTTGAAACCTTGGCACAGTACATACAAA 1690
Query 1782 ATCT-TGGTGACGAATCTGTTGATAAAGAAGATTGCAAGGGATGGTGGGTTTGAAGAAGC 1840
|| | |||||| |||||||||||| |||||| | ||||| ||||||||||||||||||||
Sbjct 1691 AT-TATGGTGAGGAATCTGTTGATGAAGAAGGTAGCAAGAGATGGTGGGTTTGAAGAAGC 1749
Query 1841 TTTGAGTCTTCTACCGATAATGA-AAGATCACGGGTTCCCTCCTTTCATTGACCCTTTCA 1899
||||||||||||||| || |||| || |||||||||||||||||||| | ||||| ||||
Sbjct 1750 TTTGAGTCTTCTACCTATGATGAGAA-ATCACGGGTTCCCTCCTTTCGTGGACCCGTTCA 1808
Query 1900 TG-AGTTACTTCTC-AACAACTGGAAAAAGCACAGAAGCTCTCGGtttttttAAGGCTAT 1957
|| | |||||| || || | ||||| |||| |||| ||| ||| |||| | |||||| |
Sbjct 1809 TGGA-TTACTTATCGAATAG-TGGAACAAGCGCAGAGGCTTTCGCTTTTCTGAAGGCTGT 1866
Query 1958 GACCTCGAAGAACTTTCCATCTA-TGTCAGTGGTTCTGCGTGTATTCGAAACTATGATGA 2016
||| || ||||| |||||||||| | ||| |||||||||||||||||||| ||||| |||
Sbjct 1867 GACTTCAAAGAAGTTTCCATCTAAT-TCAATGGTTCTGCGTGTATTCGAAGCTATGTTGA 1925
Query 2017 AGTCTGCAAGACACAGTGAAGCACAAGATTTACTCTCTCTGTGCCCAAACTATATCCGTA 2076
|||||||||| || |||||||| || |||||||| ||| ||| ||||| |||||||||
Sbjct 1926 AGTCTGCAAGGCATAGTGAAGCTCAGGATTTACTGTCTATGTCCCCAAGTTATATCCGTC 1985
Query 2077 ACAATCCGGATGTTCTAGAACTCTTCAATACCATGAAACCT-AACGA-GTCTACTGTAGA 2134
|||| | || ||||||||||| |||||||||||||||||| || | || | || ||||
Sbjct 1986 GCAATGCAGAAGTTCTAGAACTTTTCAATACCATGAAACCTGAAAAATGT-T-CTTTAGA 2043
Query 2135 AAAACCTTTGGCTGCTTCTGCT 2156
||||||||| ||||| |||||
Sbjct 2044 GAAACCTTTGCCTGCTCCTGCT 2065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120180104730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5