BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488450
Length=839
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16010.1 | Symbols: | 3-oxo-5-alpha-steroid 4-dehydrogenase... 1273 0.0
> AT5G16010.1 | Symbols: | 3-oxo-5-alpha-steroid 4-dehydrogenase
family protein | chr5:5227924-5229116 FORWARD LENGTH=969
Length=969
Score = 1273 bits (689), Expect = 0.0
Identities = 796/847 (94%), Gaps = 10/847 (1%)
Strand=Plus/Plus
Query 1 CTTCTTTCTTCCAAAGAGAAA-CAAAAAC---A-TCAATGGAAATGGTGACAAGTTTTGT 55
|||||||||||| |||||||| ||||||| | ||||||||||||||||||||||||
Sbjct 22 CTTCTTTCTTCCGAAGAGAAACCAAAAACAAAAGAAAATGGAAATGGTGACAAGTTTTGT 81
Query 56 ATATCCACCACCTCCATCGATATTGCTCAATTGTATGAGCGTCGTTGGTTTAGCCGCTCT 115
|||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||
Sbjct 82 ATATCCACCACCTCCATCAATATTGCTCAATTGTATGAGCGTCGTTGGTGTAGCTGCTCT 141
Query 116 GGCCAAGATCGGTTGGTCTGAAGTCAGAGGAAATCATCTCAAATACTCCAAATTCGGCG- 174
|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 142 GGCCAATATCGGTTGGTCTGAAATCAGAGGAAATCATCTCAAATACTCCAAATTCGGCGT 201
Query 175 -T-ATCATCATCACCACAACCACAAAAGCAGCGATTCGGCAGCATCTCAAGCCGAAATGG 232
| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 202 ATCATCATCATCACCACAACCACAGAAGGAGCGATTCGGCAGCATCTCAAGCCGAAATGG 261
Query 233 AATGCTTTTGCTATACACACCTGCGTTTCTAGCCGCTGCGGCTTCTTTCTTCGCCTTACC 292
||||||||||||||||||||||||||||||||| |||||| |||||||||||| | ||||
Sbjct 262 AATGCTTTTGCTATACACACCTGCGTTTCTAGCAGCTGCGTCTTCTTTCTTCGTCGTACC 321
Query 293 TTCTGATGATCTCAGGTTTCTTCTTCTCAAATCCGCACTTGCCCTCCATTTCTTCAAGAG 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 322 TTCTGATGATCTCAGGTTTCTTCTTCTCAAATCCGCACTTGCCCTCCATTTCTTCAAGAG 381
Query 353 GGTCTTCGAGGTTCTGTTCATACATAAATACAGTGGTGGGATGGCTGTAGACTCGGCTTT 412
||| |||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| |
Sbjct 382 GGTATTCGAGGTTCTGTTCATACATAAATACAGTGGAGGGATGGCTATAGACTCAGCTCT 441
Query 413 CGTCATAAGTAGCAGCTATTTCTCATCCACGGCATTCATGTTATACAGTCAAAATCTCAC 472
| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 442 CACCATAAGTAGCAGCTATTTCTCATCCACAGCATTGATGTTATACAGTCAAAATCTCAC 501
Query 473 CTTGGGACTGACCGAGCCGAGTTTCGATATGAAATTCGCCGGGA-TTCTCATGTTTGTGG 531
||||||||| |||||||||||||||||||||||| ||||| ||| || | ||||||||||
Sbjct 502 CTTGGGACTTACCGAGCCGAGTTTCGATATGAAACTCGCC-GGAGTTGTGATGTTTGTGG 560
Query 532 TGGGAATTGTTGGGAATCTGTATCACCATGTTTTGCTAGCTAAGTTAAGGAAAGAAGATG 591
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 561 TGGGAATTGTTGGGAATCTGTATCACCATGTTTTGCTGGCTAAGCTAAGGAAAGAAGATG 620
Query 592 GGAAGAAAGAGTACAAGATACCAAAAGGAGGTCTCTTTGATATAATCATATGCCCTCACT 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 GGAAGAAAGAGTACAAGATACCAAAAGGAGGTCTCTTTGATATAATCATATGCCCTCACT 680
Query 652 ATCTCTTTGAGATTCTTGTGTTTTGGAGCTTCTTTATGATCTCTCAGACCATTTATTCAT 711
|||| |||||||| ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 681 ATCTATTTGAGATCCTTGTGTTTTGGAGCTTCTTTCTCATCTCTCAGACCATTTATTCAT 740
Query 712 TTTCTTTCGCTATGGGAACAATGTTGTATCTCATCGGTCGGAGTTATGCTACACGAAGTT 771
||||||||||||||||||||||| | |||||||| |||||||||||||||||| ||| ||
Sbjct 741 TTTCTTTCGCTATGGGAACAATGCTCTATCTCATTGGTCGGAGTTATGCTACAAGAACTT 800
Query 772 GGTATCTTTCCAAGTTTGATGACTTCCCCAAGCATGTCAAGGCTCTTGTTCCCTTTGTAT 831
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 801 GGTATCTTTCCAAGTTTGATGACTTCCCCAAGCATATCAAGGCTCTCATTCCCTTTGTAT 860
Query 832 TCTAGAG 838
|||||||
Sbjct 861 TCTAGAG 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40890595658
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5