BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488454
Length=1397
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16040.1 | Symbols: | Regulator of chromosome condensation ... 2350 0.0
AT3G02510.1 | Symbols: | Regulator of chromosome condensation ... 1315 0.0
AT5G16030.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 110 5e-23
> AT5G16040.1 | Symbols: | Regulator of chromosome condensation
(RCC1) family protein | chr5:5240675-5243329 REVERSE LENGTH=1397
Length=1397
Score = 2350 bits (1272), Expect = 0.0
Identities = 1358/1399 (97%), Gaps = 8/1399 (1%)
Strand=Plus/Plus
Query 1 GTATCTCTCACTTTGGGTTCCATGGCTTCAGCTACTTCCGTCATAGCCTGGGGTTCTGGA 60
|||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTATCTCTCACTTTTGTTTCAATGGCTTCAGCTACTTCCGTCATAGCCTGGGGTTCTGGA 60
Query 61 GAAGACGGGCAACTAGGACTTGGAACCGATGAAGAAAAGGAATTGGCTTCCGTCGTCGAA 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGATGGGCAACTAGGACTTGGAACCGATGAAGAAAAGGAATTGGCTTCCGTCGTCGAC 120
Query 121 GCTCTTGAGCCTTTCAACGTTCGCTCCGTCGTCGGTGGTAGCCGCAATTCCCTCGCCATT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTCTTGAGCCTTTCAACGTTCGCTCCGTCGTCGGTGGTAGCCGCAATTCCCTCGCCATT 180
Query 181 TGCGATGATGGCAAGCTGTTTACATGGGGTTGGAATCAAAGGGGTACATTAGGACACCCT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGCGATGATGGCAAGCTGTTTACATGGGGTTGGAATCAAAGGGGTACATTAGGACACCCA 240
Query 241 CCAGAGACTAAAACAGAAAGCACCCCTAGTCTAGTTAAGTCTCTTGCCAACGTCAAGATT 300
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 CCTGAGACAAAAACAGAAAGCACCCCAAGTCTAGTTAAGTCTCTTGCCAACGTCAAGATT 300
Query 301 GTTCAGGCAGCTATTGGTGGTTGGCATTGTTTAGCTGTCGATGATCAAGGCCGAGCATAT 360
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTTCAGGCAGCTATTGGTGGCTGGCATTGTTTAGCTGTCGATGATCAAGGCCGAGCATAT 360
Query 361 GCTTGGGGTGGAAATGAATATGGACAGTGTGGTGAAGAGCCTTCCAAGGATGAGACAGGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCTTGGGGTGGAAATGAATATGGACAGTGTGGTGAAGAGCCTTCCAAGGATGAGACAGGT 420
Query 421 AGGCCTGTGCGGAGGGATATTGTAATCCCTAAGCGTTGTGCCCCGCAACTTACAGTCCGA 480
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 421 AGGCCTGTGCGGAGGGATATTGTAATACCTAAGCGTTGTGCCCAGCAACTTACAGTCCGA 480
Query 481 CAGGTAGCTGCAGGGGGTACTCACTCTGTGGTTCTAACCCGTGAAGGTTATGTATGGACT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CAGGTAGCTGCAGGGGGTACTCACTCTGTGGTTCTAACCCGTGAAGGTTATGTATGGACT 540
Query 541 TGGGGTCAACCGTGGCCTCCCGGTGACATAAAACAAATATCTGTTCCCGTAAGAGTTCAG 600
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 541 TGGGGTCAACCGTGGCCTCCCGGTGACATAAAACAAATTTCTGTTCCTGTAAGAGTTCAG 600
Query 601 GGTCTTGAAAACGTTCGTCTGATTGCTGTTGGAGCATTTCATAATTTGGCTCTGAAAGAA 660
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 601 GGTCTTGAAAACGTTCGTCTGATTGCTGTGGGAGCATTTCATAACTTGGCTCTGAAAGAA 660
Query 661 GATGGGACTTTGTGGGCTTGGGGTAATAATGAATATGGACAACTTGGAACTGGAGATACA 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 GATGGGACTTTGTGGGCTTGGGGTAATAATGAATATGGACAACTTGGAACTGGAGACACA 720
Query 721 CAACCGAGATCTTATCCTATTCCAGTCCAAGGCCTTGATGATCTCACTTTGGTTGATATT 780
||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 721 CAACCGAGATCGTATCCTATTCCTGTCCAAGGCCTTGACGATCTCACTTTGGTTGATATC 780
Query 781 GCTGCGGGTGGATGGCATTCAACAGCTTTAACCAATGAAGGAGAGGTGTATGGTTGGGGA 840
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 781 GCTGCGGGTGGATGGCATTCAACAGCTTTAACCAATGAAGGAGAGGTTTATGGTTGGGGA 840
Query 841 AGAGGAGAACATGGAAGGCTCGGATTTGGTGACAATGACAAGAGCAGTAAAATGCTTCCG 900
|||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 841 AGAGGAGAGCATGGAAGGCTCGGGTTTGGTGACAATGATAAGAGCAGTAAAATGCTTCCG 900
Query 901 CAGAAAGTTAATCTCTTAGCTGGAGAAGACATCATTCAGGTCTCTTGTGGCGGAACTCAT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CAGAAAGTTAATCTCTTAGCTGGAGAAGACATCATTCAGGTCTCTTGTGGCGGAACTCAT 960
Query 961 TCAGTCACTTTGACAAGAGACGGTAGGATCTTCTCGTTTGGTCGGGGAGACCACGGTAGA 1020
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TCAGTCGCTTTGACAAGAGACGGTAGGATCTTCTCGTTTGGTCGGGGAGACCACGGTAGA 1020
Query 1021 CTCGGCTATGGAAGAAAAGTGACTACAGGACAACCATTGGAGCTTCCTATAGACATTCCA 1080
||||| |||||||||||||| ||||| |||||||||||||||||||||||| ||||||||
Sbjct 1021 CTCGGGTATGGAAGAAAAGTAACTACGGGACAACCATTGGAGCTTCCTATACACATTCCA 1080
Query 1081 CC-CCTAGAAGGACGGTTCAACCACACCGATGAAGAAGACGATGGAAAATGGATAGCTAA 1139
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CCACC-AGAAGGACGGTTCAACCACACCGATGAAGAAGACGATGGAAAATGGATAGCTAA 1139
Query 1140 ACATGTAGCTTGTGGTGGCCGACACACTCTAGCAATTGTGGAATGGAAGTTTGATCAGGA 1199
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1140 ACATGTAGCTTGTGGTGGCCGACACACTCTAGCAATTGTGGAATGGAAGTATGATCAGGA 1199
Query 1200 GGAAACAGAATAACCATGAAGAAGATAGAGAGAGCaaaaaaa-aaaaTTACACAAGAGGG 1258
|||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||
Sbjct 1200 GGAAACAGAATAACCATGAAGAAGATAGAGCGAGCAAAAAAACAAAA--ACACAAGAGGG 1257
Query 1259 ACTCTAGAGATAAGCATTTGTTATAGAGAAAAGGGGAGCAAAAGCATATGGTTAAGCTTT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 ACTCTAGAGATAAGCATTTGTTATAGAGAAAAGGGGAGCAAAAGCATATGGTTAAGCTTT 1317
Query 1319 TGACACTCCCATGAATGATGAATCTATATCAAAAAGAGGAAGAACTAATATATAATATCA 1378
||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||
Sbjct 1318 TGACACTCCCATGAATGATGAATCTATATGAAA--GAGGAAGAACTAA-ATATAATATCA 1374
Query 1379 TCATGATTTTGTTTTTGAT 1397
|||||||||||||||||||
Sbjct 1375 TCATGATTTTGTTTTTGAT 1393
> AT3G02510.1 | Symbols: | Regulator of chromosome condensation
(RCC1) family protein | chr3:521794-524631 REVERSE LENGTH=1569
Length=1569
Score = 1315 bits (712), Expect = 0.0
Identities = 1027/1179 (87%), Gaps = 22/1179 (2%)
Strand=Plus/Plus
Query 22 ATGGCTT-CAGCTACTTCCGTCATAGCCTGGGGTTCTGGAGAAGACGGGCAACTAGGACT 80
|||| || |||||||||| ||||||||||||| ||||||||||| |||||||||||| |
Sbjct 96 ATGG-TTACAGCTACTTCAATCATAGCCTGGGGCTCTGGAGAAGATGGGCAACTAGGAAT 154
Query 81 TGGAACCGATGAAGAAAAGGAATTGGCTTCCGTCGTCGAAGCTCTTGAGCCTTTCAAC-G 139
||| ||| | ||||||||||||| ||||| |||||| |||||||| ||||||| | | |
Sbjct 155 TGGTACCAACGAAGAAAAGGAATGGGCTTGCGTCGTTGAAGCTCTCGAGCCTTAC-TCTG 213
Query 140 TTCGCTCCGTCGTCGGTGGTAGCCGCAATTCCCTCGCCATTTGCGATGATGGCAAGCTGT 199
|||||||||| ||| ||||||||| || ||||||||||||||||||||||||| | |||
Sbjct 214 TTCGCTCCGTTGTCTCTGGTAGCCGTAACTCCCTCGCCATTTGCGATGATGGCACGATGT 273
Query 200 TTACATGGGGTTGGAATCAAAGGGGTACATTAGGACACCCTCCAGAGACTAAAACAGA-A 258
|||||||||||||||||||||| |||||||||||||||| ||||| || |||||||| |
Sbjct 274 TTACATGGGGTTGGAATCAAAGAGGTACATTAGGACACCAACCAGAAACAAAAACAGAGA 333
Query 259 AGCACCCCTAGTCTAGTTAAGTCTCTTGCCAACGTCAAGATTGTTCAGGCAGCTATTGGT 318
| || |||||||| ||| ||| | |||||||| |||||||| ||||||||| ||||||
Sbjct 334 A-CATCCCTAGTCGAGTCAAGGCCCTTGCCAATGTCAAGATCACTCAGGCAGCAATTGGT 392
Query 319 GGTTGGCATTGTTTAGCTGTCGATGATCAAGGCCGAGCATATGCTTGGGGTGGAAATGAA 378
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 393 GGTTGGCATTGTTTAGCTGTTGATGATCAAGGCCGAGCATATGCGTGGGGTGGGAATGAA 452
Query 379 TATGGACAGTGTGGTGAAGAGCCTTCCAAGGATGAGACAGGTAGGCCTGTGCGGAGGGAT 438
|||||||| |||||||||||||||| || || |||| |||||||| || || || |||
Sbjct 453 TATGGACAATGTGGTGAAGAGCCTTTAAAAGACGAGATGGGTAGGCCCGTACGAAGAGAT 512
Query 439 ATTGTAATCCCTAAGCGTTGTGCCCCGC-AACTTACAGTCCGACAGGTAGCTGCAGGGGG 497
||||| |||||||||||||||||||| | ||||||||||| |||||||||||||||| ||
Sbjct 513 ATTGTGATCCCTAAGCGTTGTGCCCC-CAAACTTACAGTCAGACAGGTAGCTGCAGGTGG 571
Query 498 TACTCACTCTGTGGTTCTAACCCGTGAAGGTTATGTATGGACTTGGGGTCAACCGTGGCC 557
||||||||| |||||||| || || |||||| |||| |||||||||||||||||||||||
Sbjct 572 TACTCACTCGGTGGTTCTTACACGCGAAGGTCATGTGTGGACTTGGGGTCAACCGTGGCC 631
Query 558 TCCCGGTGACATAAAACAAATATCTGTTCCCGTAAGAGTTCAGGGTCTTGAAAACGTTCG 617
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||
Sbjct 632 TCCCGGTGACATAAAACAAATATCTGTTCCTGTAAGAGTTCAAGGTCTTGAAAATGTCCG 691
Query 618 TCTGATTGCTGTTGGAGCATTTCATAATTTGGCTCT-GAAAGAAGATGGGACTTTGTGGG 676
||| |||||||||||||||||||||||| ||||||| ||| |||||||||| || | ||
Sbjct 692 TCTTATTGCTGTTGGAGCATTTCATAATCTGGCTCTTGAA-GAAGATGGGAGATTATTGG 750
Query 677 CTTGGGGTAATAATGAATATGGACAACTTGGAACTGGAGATACACAACCGAGATCTTATC 736
| ||||||||||| ||||| |||||||||||||| || || || || || | |||| |||
Sbjct 751 CATGGGGTAATAACGAATACGGACAACTTGGAACCGGTGACACCCAGCCAACATCTCATC 810
Query 737 CTATTCCAGTCCAAGGCCTTGATGATCTCACTTTGGTTGATATTGCTGCGGGTGGATGGC 796
|| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 811 CTGTTCCAGTCCAAGGCCTCGATGATCTCACTTTGGTCGATATTGCTGCGGGTGGATGGC 870
Query 797 ATTCAACAGCTTTAACCAATGAAGGAGAGGTGTATGGTTGGGGAAGAGGAGAACATGGAA 856
||||||| ||| |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 871 ATTCAACGGCTCTAACTGATAAAGGAGAGGTGTATGGTTGGGGAAGAGGAGAACATGGAA 930
Query 857 GGCTCGGATTTGGTGACAATGACAAGAGCAGTAAAATGCTTCCGCAGAAAGTTAATCT-C 915
| ||||| |||||||||||||||||||||| |||||| |||| |||||||||||||| |
Sbjct 931 GACTCGGGCTTGGTGACAATGACAAGAGCAGCAAAATGGTTCCACAGAAAGTTAATCTTC 990
Query 916 TTAGCTGGAGAAGACATCATTCAGGTCTCTTGTGGCGGAACTCATTCAGTCACTTTGACA 975
| ||||| |||||| || |||||||| |||||||||||||| |||||||| ||||||||
Sbjct 991 T-AGCTGAAGAAGATATAATTCAGGTTTCTTGTGGCGGAACACATTCAGTTGCTTTGACA 1049
Query 976 AGAGACGGTAGGATCTTCTCGTTTGGTCGGGGAGACCACGGTAGACTCGGCTATGGAAGA 1035
||||| || || ||||||||||||||| | ||||| || |||||||| || ||||||||
Sbjct 1050 AGAGATGGCAGAATCTTCTCGTTTGGTAGAGGAGATCATGGTAGACTTGGTTATGGAAGG 1109
Query 1036 AAAGTGACTACAGGACAACCATTGGAGCTT-CCTATAGACATTCCACC-CCTAGAAGGAC 1093
||||| || |||||||| ||||||||| || |||||| | ||||| || ||| ||||||
Sbjct 1110 AAAGTAACAACAGGACAGCCATTGGAG-TTGCCTATAAAGATTCCTCCGCCT-GAAGGAA 1167
Query 1094 GGTTCAACCACACCGATGAAGAAGACGATGGAAAATGGAT-AGCTAAA-C-ATGTAGCTT 1150
| || || ||||| || |||||||| || ||||||||| | ||||||| | || | ||||
Sbjct 1168 GCTTTAATCACACAGACGAAGAAGAAGAAGGAAAATGG-TCAGCTAAATCGAT-T-GCTT 1224
Query 1151 GTGGTGGCCGACACACTCTAGCAATTGTGGAATGGAAGT 1189
| |||||||| |||||||| || ||||| ||||||||||
Sbjct 1225 GCGGTGGCCGCCACACTCTTGCCATTGTAGAATGGAAGT 1263
> AT5G16030.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 20
plant structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02500.1);
Has 30201 Blast hits to 17322 proteins in 780
species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink). | chr5:5238178-5240748 FORWARD LENGTH=1278
Length=1278
Score = 110 bits (59), Expect = 5e-23
Identities = 69/73 (95%), Gaps = 3/73 (4%)
Strand=Plus/Minus
Query 1325 TCCCATGAATGATGAATCTATATCAAAAAGAGGAAGAACTAATATATAATATCATCATGA 1384
||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||
Sbjct 1278 TCCCATGAATGATGAATCTATATGAAA--GAGGAAGAACTAA-ATATAATATCATCATGA 1222
Query 1385 TTTTGTTTTTGAT 1397
|||||||||||||
Sbjct 1221 TTTTGTTTTTGAT 1209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68824947195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5