BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488456

Length=452
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G16060.1 | Symbols:  | Cytochrome c oxidase biogenesis prote...   553    6e-157


> AT5G16060.1 | Symbols:  | Cytochrome c oxidase biogenesis protein 
Cmc1-like | chr5:5246120-5247431 FORWARD LENGTH=551
Length=551

 Score =  553 bits (299),  Expect = 6e-157
 Identities = 366/397 (92%), Gaps = 9/397 (2%)
 Strand=Plus/Plus

Query  1    TTGATCGGAGAAAGCCGGAAAAGCTCGAAGGTTC--CGACAATGGGGAGCTATGTGGAGC  58
            |||||||||||| ||||||||||||||||||| |  || ||||||| |||||||||||||
Sbjct  1    TTGATCGGAGAAGGCCGGAAAAGCTCGAAGGTCCGTCGTCAATGGGTAGCTATGTGGAGC  60

Query  59   AAGCTCGTGAGAATCACGTGAAGAAGAAGGTCGAAGAAGCGCTGCGTAGCAAGATGAAAG  118
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  61   AAGCTCGTGAAAATCACGTGAAGAAGAAGGTCGAAGAAGCGCTGCGTAGCAAGATGAAGG  120

Query  119  CAAAGGCATTGATGGAATGTGATCAGTATGTCTCAAAGTATGCTCAATGCGCAACAGGAA  178
            |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct  121  CAAAGGCATTAATGGAATGTGATCAGTACGTCTCCAAGTATGCTCAATGCGCAACAGGAA  180

Query  179  GAACGTTTTCTGTGGTATGGACATGTCGTAAGCAAGCTAAAGAGCTCAACACTTGCCTCC  238
            |||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct  181  GAACTTTTTCTGTGGTATGGACATGTCGTAAGCAAGCTAGGGAGCTCAACACTTGCCTCC  240

Query  239  ATCAATTCACCAATGACAATGTCTTGGAGGAAATGAAGAGAGAATATATGCTTCAAGAAG  298
            ||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||
Sbjct  241  ATCAATTCACCAATGACAATGTCTTGGAGGAAATGAAGAGAGCGTATATGGTTCAAGAAG  300

Query  299  AGGGTAAAGTCTC-GTCCTCGGCCATATAAATTTTTGTTGAACAAAAGATTTGTGT-CGG  356
            ||||||||||||| | ||||||||||||| || |||||||||||||||||||| || || 
Sbjct  301  AGGGTAAAGTCTCAG-CCTCGGCCATATAGATGTTTGTTGAACAAAAGATTTGAGTACG-  358

Query  357  ACCAATGTAGCGTGACTC--TTTGTTTCTTGTTCATT  391
            |||||| ||  ||  |||  |||||||||||||||||
Sbjct  359  ACCAATATAATGTC-CTCGCTTTGTTTCTTGTTCATT  394


 Score =  102 bits (55),  Expect = 3e-21
 Identities = 59/61 (97%), Gaps = 0/61 (0%)
 Strand=Plus/Plus

Query  391  TAAACTGTGGCCTTTTTTAAATAAGGGTGTATTCACTAAATCTAGAGATCAGATTCAAAT  450
            ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  424  TAAACTGTGGCCTTTCTTAAATATGGGTGTATTCACTAAATCTAGAGATCAGATTCAAAT  483

Query  451  A  451
            |
Sbjct  484  A  484



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21514596572


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5