BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488458
Length=1265
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16080.1 | Symbols: AtCXE17, CXE17 | carboxyesterase 17 | ch... 1764 0.0
> AT5G16080.1 | Symbols: AtCXE17, CXE17 | carboxyesterase 17 |
chr5:5252315-5253618 REVERSE LENGTH=1304
Length=1304
Score = 1764 bits (955), Expect = 0.0
Identities = 1187/1293 (92%), Gaps = 40/1293 (3%)
Strand=Plus/Plus
Query 1 ACTCAATCCAAACTCAACCAACAACGCTACACTTCATCATaaaaaataaaaaaCCAATGG 60
||||||||||||||||||| ||||||||||| ||| |||||||||||||||| ||||
Sbjct 1 ACTCAATCCAAACTCAACCCACAACGCTACA---CAT--TAAAAAATAAAAAACCTATGG 55
Query 61 CAACCATTTCCTTCCCTCACAACCACCAATCCTCCGACAGCCGCCGTGGTGGATCCCACC 120
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 56 CAACCATTTCCTTCTCTCACAACCACCAATCCTCCGACAACCGCCGTGGTGGATCCCATC 115
Query 121 ACCACCGTCACGGCCCCGTCGTGGAAGAGATCGAAGGACTCATCAAAGTTTTCAACGACG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 ACCACCGTCACGGCCCCGTCGTGGAAGAGATCGAAGGACTCATCAAAGTTTTCAACGACG 175
Query 181 GCTGCGTCGAAAGACCTCCCATAGTTCCCACCGTCTCATCC-ACCCTTCACCCATCTGCT 239
|||||||||||||||||||||||||||||| ||||||| || ||| ||||||||||| ||
Sbjct 176 GCTGCGTCGAAAGACCTCCCATAGTTCCCATCGTCTCA-CCAACCATTCACCCATCTTCT 234
Query 240 AAAGCCACAGCCTTTGACATCAAACTATCCAACGACACATGGACACGTGTATACATCCCC 299
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 235 AAAGCCACAGCCTTTGACATCAAACTATCCAACGACACATGGACACGTGTCTACATCCCC 294
Query 300 GACGCCGCAGCAGCCTCGCCGTCCGTTACTCTCCCTCTCCTCGTTTACTTCCACGGCGGT 359
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GATGCCGCAGCAGCCTCGCCGTCCGTTACTCTCCCTCTCCTCGTTTACTTCCACGGCGGT 354
Query 360 GGCTTCTGCGTTGGCTCCGCAGCTTGGAGTTGCTACCATGACTTCTTGACCAGCCTCGCC 419
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 355 GGTTTCTGCGTTGGCTCCGCCGCTTGGAGTTGCTACCATGACTTCTTGACCAGCCTTGCC 414
Query 420 GTTCAAGCCCGTTGCGTTGTCGTCTCCGTAAACTACCGTTTAGCCCCTGAACACCGTCTC 479
||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 415 GTTAAAGCCCGTTGCGTCATCGTTTCCGTAAACTACCGTTTAGCCCCTGAACACCGTCTC 474
Query 480 CCGGCGGCGTACGATGACGGCGTTAACGTCGTCACGTGGCTAGTCAAGCAACAAACATCT 539
|||||||||||||| ||||||||||| |||||| ||||||||||||||||||||| ||||
Sbjct 475 CCGGCGGCGTACGACGACGGCGTTAATGTCGTCTCGTGGCTAGTCAAGCAACAAATATCT 534
Query 540 AAC---GGTGGATATCCTTCTTGGGTGAGTAAGTGCAACCTCTCAAACGTTTACTTGGCC 596
| | |||||||||||||||||| ||||||| || |||||||||||||||| |||||||
Sbjct 535 ACCGGTGGTGGATATCCTTCTTGGTTGAGTAAATGTAACCTCTCAAACGTTTTCTTGGCC 594
Query 597 GGAGATAGCGCCGGAGCCAACATAGCTTACCAAGTCGCCGTCAGAATCACCGCCAGTGGC 656
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 595 GGAGATAGCGCCGGAGCCAACATAGCTTACCAAGTCGCCGTAAGAATCATGGCCAGTGGC 654
Query 657 AAATACGTAAACACTCCAAACCTCAAGGGCATAATTCTCATCCACCCTTTCTTCGGCGGC 716
||||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||||
Sbjct 655 AAATACGCAAACACTCTACACCTCAAGGGCATTATTCTCATCCACCCTTTCTTCGGCGGC 714
Query 717 GAATCAAGAACGTCCTCGGAGAAACAGCAACACCACTCCAAGTCATCGGCTCTAACTCTT 776
|||||||||||||| ||||||||||| ||||| ||| ||||||||||||| || ||||||
Sbjct 715 GAATCAAGAACGTCTTCGGAGAAACAACAACATCACACCAAGTCATCGGCGCTTACTCTT 774
Query 777 CCAGCTTCCGACGCGTATTGGCGACTGGCTCTGCCACGTGGAGCGAGTAGAGACCATCCT 836
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 775 TCAGCTTCCGACGCATATTGGCGTCTAGCTCTGCCACGTGGAGCGAGTAGAGACCATCCA 834
Query 837 TGGTGTAACCCTCTGGGGAGCTCGACGGCGGGTGCGAAGTTACCGACGACGATGGTGTTC 896
||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||
Sbjct 835 TGGTGTAACCCTCTGATGAGCT---CGGCGGGAGCGAAGTTACCGACGACGATGGTGTTC 891
Query 897 ATGGCGGAGTTTGATATACTAAAAGATA-GAAACTTGGAGATGTGTGAAGTGATGAGAAG 955
|||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 892 ATGGCGGAGTTTGATATACTAAAAGA-ACGAAACTTGGAGATGTGTAAAGTGATGAGAAG 950
Query 956 CCATGGGAAGAGAGTTGAAGGTATTGTTCATGGAGGTGTTGGTCACGCTTTTCATATTCT 1015
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 951 CCATGGGAAGAGAGTTGAAGGTATAGTTCATGGAGGTGTTGGTCACGCTTTTCATATTCT 1010
Query 1016 CGACAACTCGTCGGTGTCACGTGATCGAATCCACGACATGATGTGTCGTCTTCACAACTT 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 CGACAACTCGTCGGTGTCACGTGATCGAATCCACGACATGATGTGTCGTCTTCACAACTT 1070
Query 1076 CATACATCCAT-A-A-TAATTCCCTAAAGACTTTCTTTC-GCAACCTATAATTGATTTTA 1131
||||||||||| | | ||||||||||||||| || |||| | ||||| |||||||||| |
Sbjct 1071 CATACATCCATCATAATAATTCCCTAAAGACCTT-TTTCTGAAACCTTTAATTGATTTAA 1129
Query 1132 AATGTTG-----GA----TAA-AA-ACTTAATA--T-G---T-TTGTGTTTTGATTGTGG 1173
||||||| || ||| || | ||| | | | | ||||||||| |||||||
Sbjct 1130 AATGTTGTTCTTGAAAAATAATAAGAGATAAAAACTTGAAATGTTGTGTTTTTATTGTGG 1189
Query 1174 ATTAAAGTAAGTTTTGCTTTGTAGTGTTTTT-CAATGGATGTGTATTTGGATAAATTATG 1232
||||||||||| ||||||||||||||||||| || || | ||| || | ||||||||||
Sbjct 1190 ATTAAAGTAAGCTTTGCTTTGTAGTGTTTTTTCAGTGAAGGTGAATA-GTATAAATTATG 1248
Query 1233 TAATTCTATAGATGGACTTGTACTTTTAAGTTA 1265
|||| | ||||||||||||||||||||||||||
Sbjct 1249 TAATACAATAGATGGACTTGTACTTTTAAGTTA 1281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62198475255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5