BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488459
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1738 0.0
> AT5G16110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G02555.1);
Has 133 Blast hits to 133 proteins in 18 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 133; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5260604-5262840
REVERSE LENGTH=1474
Length=1474
Score = 1738 bits (941), Expect = 0.0
Identities = 1277/1422 (90%), Gaps = 91/1422 (6%)
Strand=Plus/Plus
Query 1 AAAAATAATAAATGCATGAAAATTAAGCTGTCCACAAATATCACTAATACGACGGCGATA 60
|||||| | ||||||||||||||||||||||||||||||||||||| ||||||| ||| |
Sbjct 36 AAAAATTAGAAATGCATGAAAATTAAGCTGTCCACAAATATCACTATTACGACGCCGAGA 95
Query 61 AAAAGC-A------A--TT--T-T-CCA----G--TTTAAAGCAAAAAATCCTAATTCAA 101
|||||| | | || | | | | | ||||||||||||| ||| ||||| |
Sbjct 96 AAAAGCAACTTTCCAGTTTGATATACTATTTTGTTTTTAAAGCAAAAATTCCCAATTCCA 155
Query 102 CCAAAACGTCATCGTTTCAAGTTGTCTTCAACCTCACCCACAC-TTCTTCGGTCTCATCC 160
| ||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 156 -CGAAACGTCGTCGTTTCATGTTGTCTTCAACCTCACCCACACTTTCTTCGGTCTCATCC 214
Query 161 TTTTATAAAATCCCTATTTCCTCTGACGATTTTTCG---------C-ctctctctctctc 210
|||||||||||||| ||||||||| ||||||||||| | |||||||||||||
Sbjct 215 TTTTATAAAATCCCCATTTCCTCTAACGATTTTTCGCCTCTCTCTCTCTCTCTCTCTCTC 274
Query 211 tctctc--tc-tc--tc-tct-c-tc-tc--tctctctc-ct-ct-T-CCGGAGATTTTT 255
|||||| || || || ||| | || || |||||||| || || | ||||||||||||
Sbjct 275 TCTCTCTTTCTTCTATCTTCTCCGTCATCGTTCTCTCTCTCTCCTCTCCCGGAGATTTTT 334
Query 256 ACTCAGGCGTTCTTCTGTGGATCAAAGGTGAAGAAGATGAATCATTGCAACCTTCAGCAG 315
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 335 ACTCAGGCGTTCTTCTGTGGATCAGAGGTGAAAAAGATGAATCATTGCAACCTTCAGCAG 394
Query 316 AACGCCTTCATGTCTCGTGAGGAGATGATGGGATTTGATCGCAAGGATCTTGTTGTTTGT 375
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 395 AACGCCTTCATGTCTCGTGAGGAGATGATGGGATTTGACCGTAAGGATCTTGTTGTTTGT 454
Query 376 CCTAAGCCTCGACGTGTTGGTTTACTCGCCAACAACGTCATTCGTCCTCTCAGATTACAT 435
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 455 CCTAAGCCTCGACGTGTTGGTTTACTCGCCAACAACGTTATTCGTCCTCTTAGATTACAT 514
Query 436 ATGAGTCAAGCTGCTA-CTGATTTGTGTGATTCTAAAGCTGGTGCAGAGCTTTTGGAAAT 494
|||||||||||||| | | || ||||||||||||||||||||||| ||||||||||||||
Sbjct 515 ATGAGTCAAGCTGC-AGCCGACTTGTGTGATTCTAAAGCTGGTGCTGAGCTTTTGGAAAT 573
Query 495 CATTCGTAGAAAGGAGGATAATGGAACAATAGGGCAGTTACTATCATCATCGCCACCATA 554
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 574 CATTCGTAGAAAGGAGGATAATGGAACAATAGGGCAGTTACTATCATCATCCCCACCGTA 633
Query 555 TTTTCCTGGCTCACCACCCAGCAGAGCGGCGAACCCATTAGCCCAAGATGCTCGCTTTCG 614
|||||| || |||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 634 TTTTCCCGGTTCACCACCGAGTAGAGCGGCGAACCCATTAGCCCAAGATGCTCGTTTTCG 693
Query 615 AGATGAGAAACTCAATCCAATCTCACCAAACTCTCCTTTCCTTCAGCCCA-ATTCGGCAA 673
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 694 AGATGAGAAACTCAATCCAATCTCACCAAACTCTCCTTTCCTTCAG-CCATATTCGGCAA 752
Query 674 CCGGTTTTCCGTCTCCATCTTCTTCGTCATCATCGTCG---TCCCGTGGTTGTGTTAGAA 730
|||| ||||| |||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 753 CCGGGTTTCCATCTCCATCTTCTTCCTCATCATCGTCGTCTTCCCGTGGTTGTGTTAGAA 812
Query 731 TGAAATTTGGACTCAACTCGCCTGCAGTTAGAGTAGAAGGATTTGATTGCTTGAACCGTG 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 TGAAATTTGGACTCAACTCGCCTGCAGTTAGAGTAGAAGGATTTGATTGCTTGAACCGTG 872
Query 791 ACCGCCAAAACTCGAGCATCCCTGCCATGGCTTAGTAGACAAACAA-AAGAA--CAAGTG 847
|||| ||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 873 ACCGTCAAAACTCGAGCATCCCTGCCATGGCTTAGTAGACAAACAACAAAAAAACAAGTG 932
Query 848 TATATAGAGATTCCGGAATCGTTCA--C-C-AATGCCTAACAGAGGAGGATTTGATTACT 903
|| ||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 933 TACATAGAGATTCCGGAATCGTTCGTTCGCCAATGCCTAACAGAGGAGGATTTGATTACT 992
Query 904 ACTGCTGCTACTATTACTACTACCATTTTTGAA-GTAAATGAATATGTTTTTGCTTTTCA 962
|||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 993 ACTGCTGCAACTATTACTACTACCATTTTTGAAAGTAAATGAATATGTTTTTGTTTTTCA 1052
Query 963 TCTTTTCCTaagagatcgagagggaagaggaaggaggaaggaggaagatgaagaTCAGTT 1022
|||| |||||||||| ||||| || | ||||| ||||||||||||||||||||||||||
Sbjct 1053 TCTTCTCCTAAGAGA--GAGAGAGA-G-GGAAG-AGGAAGGAGGAAGATGAAGATCAGTT 1107
Query 1023 ACCGTCGCCGGTCACCGTTTTTTAACTGTTTTATTCAGGTTAGTGTTTGTATATAAAGAT 1082
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1108 ACCGTCGCCGGTCACCGTTT---AACTGTTTTATTCAGGTTAGTGTTTGTATATAAAGAT 1164
Query 1083 GCAGTATTTAAATGAAGAGTCGAATCTATGTATTCGTTTGGTGTTTTTCTGGGTCGGGCG 1142
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 GCAGTATTTAAAAGAAGAGTCGAATCTATGTATTCGTTTGGTGTTTTTCTGGGTCGGGCG 1224
Query 1143 GATCTTTATTACTGTT--ATATATAACTAAG-GGAGAAGATTAGAAGA--A-GT---TGT 1193
|||||||| ||||||| ||||||||||||| || ||||||||||||| | | |||
Sbjct 1225 GATCTTTAGTACTGTTTCATATATAACTAAGAGG-GAAGATTAGAAGATGAAGAAGCTGT 1283
Query 1194 AAAATTTTCTCGGGGaaaaaaaaCTCTGGTTTCTATCTTCTCGTTGTAATATAGATAATG 1253
|||||||||| ||| || |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1284 AAAATTTTCTTGGG-AAGAAAA-CTCTGGTTTCTATCTTCTCGTTGTAATATAGATAATC 1341
Query 1254 AATTTGGATTTATCTTCTTTCAGAGAGTATCATCACCATTGTATATAGTAATGTTTAATT 1313
|| ||||||||||||||||||||| | ||| | | |||||||||||||||||||| ||
Sbjct 1342 AACTTGGATTTATCTTCTTTCAGA---T-TCA-C-C-ATTGTATATAGTAATGTTTA-TT 1393
Query 1314 TTCTTCTTCTTGGTGACTTAGTTCTCTCTCACCTTTGTATAT 1355
|| | ||| || | || |||||||||||||||||||||||
Sbjct 1394 TT-T-CTTGGTGATTTCTAAGTTCTCTCTCACCTTTGTATAT 1433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66766724850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5