BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488460
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16120.2 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1921 0.0
> AT5G16120.2 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:5265633-5267916 FORWARD LENGTH=1438
Length=1438
Score = 1921 bits (1040), Expect = 0.0
Identities = 1153/1208 (95%), Gaps = 5/1208 (0%)
Strand=Plus/Plus
Query 1 CTGAATGATTCTTTTTAGAATATTTGTTAATGGCTCTGAGATCAG---CAAAGCTTACGC 57
||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||
Sbjct 91 CTGAATGATTCTTTTTAGAATTTTTGTTTATGGCTCTGAGATCAGCAACAAAGCTTACGC 150
Query 58 TTTTCAGTCCTTTACACGGTAGCAATAGTCACTAATTTTGATTGGGTTTGTAGATAAAGG 117
|||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||
Sbjct 151 TTTTCAGTCCTTTACACGGTAGCACTAGTCACTAATTATGATTCGGTTTGTAGATAAAGG 210
Query 118 AAGAAGCTCGTTGTTGCAAAGAAGGAGATCGATGGCTCCGACGGCGACGCTGGATAAAAA 177
|||||| ||||||| ||||||||||| ||||||||||||||||||||||||||| || ||
Sbjct 211 AAGAAGATCGTTGTGGCAAAGAAGGAAATCGATGGCTCCGACGGCGACGCTGGACAACAA 270
Query 178 TGAGGAGCTCCGGCGACTCAAGGAGGTTAATATTGACGAAGCTCCGGGGCGTCGTCGTGT 237
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 271 TGAGGAGCTCCGGCGACTCAGGGAGGTTAATATTGACGAAGCTCCGGGGCGTCGTCGTGT 330
Query 238 TCGTGATTCCTTGAAAGATATTCAGCTTAATCTCGATCATATCCTCTTCAAGACACCAGA 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 331 TCGTGATTCCTTGAAAGATATTCAGCTTAATCTCGATCATATCCTCTTCAAGACACCAGA 390
Query 298 AAAGGGGATTAAGACAAAGGAGTCTTTTGAGGTGAATTCGAGAGGAGTTGAGATTTTCTC 357
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 AAATGGGATTAAGACAAAGGAGTCTTTTGAGGTGAATTCGAGAGGAGTTGAGATTTTCTC 450
Query 358 CAAAAGCTGGCTTCCTGAAGCTTCTAAGCCTAGAGCTTTGGTTTGTTTCTGCCATGGTTA 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 TAAAAGCTGGCTTCCTGAAGCTTCTAAGCCTAGAGCTTTGGTTTGTTTCTGCCATGGTTA 510
Query 418 TGGAGATACTTGCACGTTTTTCTTCGAAGGGATTGCAAGGAGATTGGCATTGTCGGGATA 477
||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 511 TGGAGATACTTGCACATTTTTCTTCGAAGGAATTGCAAGGAGATTGGCATTGTCTGGATA 570
Query 478 TGGAGTTTTCGCTATGGATTATCCGGGATTTGGCTTGTCGGAGGGCTTACATGGTTATAT 537
|||||||||||||||||||||||||||||| ||||| || |||||||| |||||||||||
Sbjct 571 TGGAGTTTTCGCTATGGATTATCCGGGATTCGGCTTATCAGAGGGCTTGCATGGTTATAT 630
Query 538 TCCTAGCTTTGATCTTCTTGTTCAAGATGTCATGGAGCATTACTCCAACATGAAAGCGAA 597
|||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 631 CCCTAGCTTTGATCTCCTTGTTCAAGATGTTATTGAGCATTACTCCAACATTAAAGCGAA 690
Query 598 TCCTGAGTTTAGTTCTCTACCGAGCTTTCTCTTTGGACAGTCAATGGGTGGAGCTGTGTC 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 TCCTGAGTTTAGTTCTCTACCGAGCTTTCTCTTTGGACAGTCAATGGGTGGAGCTGTGTC 750
Query 658 ACTCAAAATACATCTCAAACAACCAAATGCATGGACCGGTGCAGTCTTGCTAGCACCAAT 717
|||||||||||||||||||||||||||||| ||| |||| ||||||||| ||||||||||
Sbjct 751 ACTCAAAATACATCTCAAACAACCAAATGCGTGGGCCGGCGCAGTCTTGTTAGCACCAAT 810
Query 718 GTGCAAAATTGCAGATGATTTGGTTCCACCACCGGTATTAAAACAGATTTTGATCGGCCT 777
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 811 GTGCAAAATTGCAGATGATTTGGTTCCACCACCTGTATTGAAACAGATTTTGATCGGTCT 870
Query 778 AGCCAATGTTCTACCGAAACACAAGTTGGTACCACAAAAGGATTTAGCAGAAGCAGGGTT 837
||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 871 AGCTAATGTTCTACCAAAACACAAGTTGGTTCCACAAAAGGATTTAGCAGAAGCAGGGTT 930
Query 838 TAGAGATATCAGGAAGAGGGAAATGACACTATACAACATGATTTGTTACAGTGGCAAACC 897
||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||
Sbjct 931 TAGAGATATCAGGAAGAGGGATATGACACCATACAACATGATTTGTTACAGCGGCAAACC 990
Query 898 ACGGCTACGGACTGCAGTAGAAATGCTTAGAACAACTCAGGAGATCGAAAAACAATTGCA 957
|||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||
Sbjct 991 ACGGCTACGGACTGCAGTAGAAATGCTTCGAACAACTCAGGACATTGAAAAACAATTGCA 1050
Query 958 GGAGGTGTCTTTGCCGATACTGATTCTACACGGACAAGCTGATACAGTGACAGATCCTTC 1017
|||||| |||||||||||| |||||||||| ||| |||||||||||||||||||||||||
Sbjct 1051 GGAGGTATCTTTGCCGATATTGATTCTACATGGAGAAGCTGATACAGTGACAGATCCTTC 1110
Query 1018 AGTGAGCAGAGAGCTGTACGAGAAAGCGAAAAGTCCAGACAAGAAGATAGTTTTGTATGA 1077
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1111 AGTGAGCAGAGAGTTGTACGAGAAAGCCAAAAGTCCAGACAAGAAGATAGTTTTGTATGA 1170
Query 1078 AAATGCTTATCACTCTCTGCTCGAAGGCGAACCAGACGACATGATTCTCCGTGTCTTGTC 1137
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 AAATGCTTATCATTCTCTGCTCGAAGGCGAACCAGACGACATGATTCTCCGTGTCTTGTC 1230
Query 1138 CGATATTATCTCGTGGCTCGATGACCATAGCTTGCAAGCTGAAGGATCAT-TAGTTACTA 1196
||||||||||||||||||| |||||||||||||||||||||| ||||||| | |||||||
Sbjct 1231 CGATATTATCTCGTGGCTCAATGACCATAGCTTGCAAGCTGAGGGATCATCT-GTTACTA 1289
Query 1197 CTATGTAG 1204
||||||||
Sbjct 1290 CTATGTAG 1297
Score = 69.4 bits (37), Expect = 8e-11
Identities = 48/53 (91%), Gaps = 1/53 (2%)
Strand=Plus/Plus
Query 1209 GTTTTTAGGTAAACATTTTACTTAGTGAAGAGTATTTCTCAACGAATAAGCAA 1261
|||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 1320 GTTTTTAGGTTCTCA-TTTACCTAGTGAAGAGTATTTCTCAACGAATAAGCAA 1371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61997673075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5