BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488462
Length=914
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16130.1 | Symbols: | Ribosomal protein S7e family protein ... 1465 0.0
AT3G02560.1 | Symbols: | Ribosomal protein S7e family protein ... 627 7e-179
> AT5G16130.1 | Symbols: | Ribosomal protein S7e family protein
| chr5:5268421-5270156 FORWARD LENGTH=946
Length=946
Score = 1465 bits (793), Expect = 0.0
Identities = 876/916 (96%), Gaps = 6/916 (1%)
Strand=Plus/Plus
Query 1 ATCGAACATTAAAACCTGATTTTACTGAAACTGTGCTGCGAAGGAGAAGCCGCAAGCCAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATCGAACATTAAAACCTGATTTTACTGAAACTGTGCTGCGAAGGAGAAGCCGCAAACCAT 60
Query 61 TTTTTGTGAATCTAGGGTTCTTCTTCGTTCTTGCAGATTTCGCCTCCGTTTTCACTAAGA 120
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 61 TTTTTGTCAATCTAGGGTTCTTCTTCGTACTTGCAGATTTCGCCTCCGTTTTCACTACGA 120
Query 121 TCGGTGAAGATGTTCTCCGCTCAGAACAAGATCAAGAAGGACAAGAATGCTGAGCCAACA 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTGTGAAGATGTTCTCCGCTCAGAACAAGATCAAGAAGGACAAGAATGCTGAGCCAACA 180
Query 181 GAATGTGAGGAGCAAGTTGCTCAGGCTTTGTTTGATTTGGAGAACACTAACCAGGAGCTG 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 GAATGCGAGGAGCAAGTTGCTCAGGCTTTGTTTGATTTGGAGAACACTAACCAGGAGTTG 240
Query 241 AAAAGCGAGTTGAAAGATCTCTACATCAACCAAGCTGTTCAAATGGATATCTCCGGAAAC 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 241 AAAAGCGAGTTGAAAGATCTCTACATCAACCAAGCTGTTCACATGGATATCTCTGGAAAC 300
Query 301 CGCAAAGCTGTTGTGATTTACGTTCCATTCAGATTGAGGAAAGCTTTCCGCAAGATTCAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGCAAAGCTGTTGTGATTTACGTTCCATTCAGATTGAGGAAAGCTTTCCGCAAGATTCAT 360
Query 361 CCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTTAGTGGAAAGGATGTCATCTTTGTTACC 420
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 361 CCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAGGATGTTATCTTTGTTACC 420
Query 421 ACAAGAAGGATCATGCGTCCTCCTAAGAAGGGTGCTGCTGTTCAGAGGCCACGTAACAGA 480
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 421 ACAAGAAGGATCATGCGTCCCCCCAAGAAGGGTGCTGCTGTTCAGAGGCCACGTAACAGA 480
Query 481 ACTCTTACCTCTGTTCATGAAGCTATGCTTGAAGATGTTGCTTTCCCCGCTGAGATTGTT 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACTCTTACCTCAGTTCATGAAGCTATGCTTGAAGATGTTGCTTTCCCCGCTGAGATTGTT 540
Query 541 GGAAAGCGTACTCGGTACCGTCTTGATGGTTCCAAGATCATGAAGGTCTATTTGGATGCC 600
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 GGAAAGCGTACTCGCTACCGTCTTGATGGTTCCAAGATCATGAAGGTCTTTTTGGATGCC 600
Query 601 AAGGAAAAGAACAACACTGAATACAAGCTCGAGACTATGGTGGGTGTGTACCGTAAACTT 660
||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 601 AAGGAAAAGAACAACACAGAGTACAAGCTCGAGACTATGGTCGGTGTGTACCGTAAACTT 660
Query 661 ACCGGCAAAGATGTCGTTTTTGAGTACCCAGTCGAAGCTTGAAAGAAGATGATGATGAAT 720
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 ACTGGCAAAGATGTTGTTTTTGAGTACCCAGTCGAAGCTTGAAAGAAGATGATGAAGAAC 720
Query 721 CATCAGGATAGAGAAAGAGAGCTTTT-TATTCTGTTTTGTGGTATTTAGGATGAAGGAAA 779
||||||||||| |||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 721 CATCAGGATAGTGAAAGAGAGCTTTTGT-TTATGTTTTGTGGTATTTAGGATGAAGGAAA 779
Query 780 CTCTCTTGATTCAGTTCCTTATGCACAATCTTTAATGTTTTATTTACAAAGACTACTTTT 839
|||||||||||||||||||| | |||||||||||||||| ||||||||| ||||||||||
Sbjct 780 CTCTCTTGATTCAGTTCCTTGTTCACAATCTTTAATGTTCTATTTACAATGACTACTTTT 839
Query 840 TGTGCTTTTCAATTTTGAAACCTTCTTTATAATTTCAGATTCATTC-CAAATTTCAAAAG 898
|||| |||||||||||||||||| || || ||||||||||| ||| |||||||||| |
Sbjct 840 TGTGTTTTTCAATTTTGAAACCT-CT--ATGATTTCAGATTCGTTCTCAAATTTCAACTG 896
Query 899 CAACACATTGAGAAGA 914
||||||||||||||||
Sbjct 897 CAACACATTGAGAAGA 912
> AT3G02560.1 | Symbols: | Ribosomal protein S7e family protein
| chr3:541715-543385 FORWARD LENGTH=910
Length=910
Score = 627 bits (339), Expect = 7e-179
Identities = 517/602 (86%), Gaps = 15/602 (2%)
Strand=Plus/Plus
Query 119 GATCGGTGAAGATGT-TCTCCGCTCAGAACAAGATCAAGAAGGACAAGAATGCTG-AGCC 176
|||| |||||||||| | || | ||||||||||||| | ||||| ||| || || | ||
Sbjct 107 GATCTGTGAAGATGTAT-TCGGGTCAGAACAAGATCCACAAGGATAAGGGTGTTGCA-CC 164
Query 177 AACAGAATGTGAGGAGCAAGTTGCTCAGGCTTTGTTTGATTTGGAGAACACTAACCAGGA 236
|||||| | ||| ||||||||| |||||||||||||||| ||||||||||| ||||||||
Sbjct 165 AACAGAGTTTGAAGAGCAAGTTACTCAGGCTTTGTTTGACTTGGAGAACACCAACCAGGA 224
Query 237 GCTGAAAAGCGAGTTGAAAGATCTCTACATCAACCAAGCTGTTCAAATGGATATCTCCGG 296
| |||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||
Sbjct 225 GTTGAAAAGCGAGTTGAAAGATCTCTACATTAACCAAGCTGTTCAGATGGATATTTCTGG 284
Query 297 AAACCGCAAAGCTGTTGTGATTTACGTTCCATTCAGATTGAGGAAAGCTTTCCGCAAGAT 356
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 285 CAACCGCAAAGCTGTTGTGATCTACGTTCCATTCAGGCTGAGGAAAGCTTTCCGCAAGAT 344
Query 357 TCATCCCCGTCTCGTCAGAGAGCTTGAGAAGAAGTTTAGTGGAAAGGATGTCATCTTTGT 416
||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 345 TCATCTTCGTCTGGTCAGAGAGCTTGAGAAGAAGTTCAGTGGAAAAGATGTGATCTTTGT 404
Query 417 TACCACAAGAAGGATCATGCGTCCTCCTAAGAAGGG-TGCTGCTGTTCAGAGGCCACGTA 475
| | || ||||| |||||||| || || ||||| || | | ||||||||||| ||||| |
Sbjct 405 TGCTACCAGAAGAATCATGCGCCCACCAAAGAAAGGCT-CAGCTGTTCAGAGACCACGCA 463
Query 476 ACAGAACTCTTACCTCTGTTCATGAAGCTATGCTTGAAGATGTTGCTTTCCCCGCTGAGA 535
||||||||||||| ||||| |||||||| ||||| || ||||| |||| ||| |||||||
Sbjct 464 ACAGAACTCTTACTTCTGTCCATGAAGCCATGCTCGAGGATGTCGCTTACCCTGCTGAGA 523
Query 536 TTGTTGGAAAGCGTACTCGG-TACCGTCTTGATGGTTCCAAGATCATGAAGGTCTATTTG 594
|||| |||||| | || | | |||||||||||||| |||||||||||||||| | ||||
Sbjct 524 TTGTAGGAAAGAGAAC-CAGATACCGTCTTGATGGCACCAAGATCATGAAGGTATTTTTG 582
Query 595 GAT-GCCAAGGAAAAGAACAACACTGAATACAAGCTCGAGACTATGGTGGGTGTGTACCG 653
||| | ||| ||||||| ||||||| |||||||| ||||| ||||||||||||||| |
Sbjct 583 GATAGT-AAGCTAAAGAACGACACTGAGTACAAGCTGGAGACAATGGTGGGTGTGTACAG 641
Query 654 TAAACTTACCGGCAAAGATGTCGTTTTTGAGTACCCAGTC---GAAGCTTGAAAGAAGAT 710
|||||||| || |||||||| ||||| |||||||||||| |||||||||| || |||
Sbjct 642 GAAACTTACAGGGAAAGATGTAGTTTTCGAGTACCCAGTCATAGAAGCTTGAA-GA-GAT 699
Query 711 GA 712
||
Sbjct 700 GA 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44658156683
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5