BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488464
Length=865
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16140.1 | Symbols: | Peptidyl-tRNA hydrolase family protei... 1221 0.0
> AT5G16140.1 | Symbols: | Peptidyl-tRNA hydrolase family protein
| chr5:5270170-5271921 REVERSE LENGTH=951
Length=951
Score = 1221 bits (661), Expect = 0.0
Identities = 758/802 (95%), Gaps = 17/802 (2%)
Strand=Plus/Plus
Query 24 AAGAAGAAGAGTTCTTTGAAT---CAACAGTTCAATGCTCTGCCCAACGTATACACCAAC 80
||||||||||| ||||||||| ||||||||| ||| | |||||||||||||||||||
Sbjct 57 AAGAAGAAGAGGTCTTTGAATCAACAACAGTTCCATGTTGTGCCCAACGTATACACCAAG 116
Query 81 TATTTACCACTTTCATACGCAAAAGCCGGTTTTTCGGAAACCGAGGTTTCGGGTTTGTTC 140
| ||||||| ||||| ||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct 117 TGTTTACCATTTTCAAACGCAAAAGCCAGTTTTCCGGAAACAGAGGTTTCGGGTTTGTTC 176
Query 141 ATCTACTTC---TAGTGAGAATGACAGATTCAAAGTAGAGTACACTCCTTGGCTTATCGT 197
||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 177 ATCTACTTCTGGTGGTGAGGATGATAGATTCAAAGTAGAGTACACTCCTTGGCTTATCGT 236
Query 198 TGGGTTGGGCAATCCAGGAAACAAGTATCATGGAACAAGACACAATGTTGGTTTCGAGAT 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TGGGTTGGGCAATCCAGGAAACAAGTATCATGGAACAAGACACAATGTTGGTTTCGAGAT 296
Query 258 GATCGATGTGTTGGCTAGAAAAGAAGGGGTTTTGATGAACACGATACAGTCAAAAGCACT 317
|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||
Sbjct 297 GATCGATGTGTTGGCTAGAAAAGAAGGGGTGTTGATGAACACTATACAGTCCAAAGCTCT 356
Query 318 AATCGGAATAGGTGCTATTGAAGATGTACCTATCTTGCTGGCTAAACCTCAGACTTATAT 377
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 357 AATCGGAATAGGTGCTATTGAAGATGTACCTATCTTGTTGGCTAAACCTCAGACTTATAT 416
Query 378 GAACTTCAGCGGCGAATCGGTTGGATCTTTAGCTTCACACTATCGAGTACCTTTGCGCCA 437
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 417 GAACTTCAGCGGCGAATCGGTTGGATCTCTAGCTTCACACTATCGAGTACCATTGCGCCA 476
Query 438 CATTTTAATGATTTACGATGAGATGGCTTTACCAAATGGGGTTTTGAGACTTCAACCGAA 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CATTTTAATGATTTACGATGAGATGGCTTTACCAAATGGGGTTTTGAGACTTCAACCGAA 536
Query 498 AGGAGGTCAAGGCTATCACAACGGAGTGAAGAGTGTAATGGGGCATTTGGATGGTCGTCG 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AGGAGGTCAAGGCTATCACAACGGAGTGAAGAGTGTAATGGGGCATTTGGATGGTCGTCG 596
Query 558 AAACTTTCCTCGTTTAAGCATAGGCATTGGTAAACCACCTGGAAACATGGATATGAAAGC 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AAACTTTCCTCGTTTAAGCATAGGCATTGGTAAACCACCTGGAAACATGGATATGAAAGC 656
Query 618 TTTTCTTCTTCAGAAGTTTAGTCCATTGGAACGGAAACAGATCGATGAAGCACTCGAGCA 677
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 657 TTTTCTTCTTCAGAAGTTTAGTCCATTGGAACAGAAACAGATCGAGGAAGCACTCGAGCA 716
Query 678 AGGAAGTGAAGCTGTGAAGACTCTTGTGCTTAATGGCTTCAATCAAGGAATTTCGAGATT 737
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AGGAAGTGAAGCAGTGAAGACTCTTGTGCTTAATGGCTTCAATCAAGGAATTTCGAGATT 776
Query 738 TAATCTTGTGCAGAAGTATAAATTCCACAAAGTATAGAATCCTTTTGCTTTGATTTGCAA 797
||||||||||||||| ||||||||||| |||||||||| ||| | ||||||||
Sbjct 777 TAATCTTGTGCAGAAATATAAATTCCATAAAGTATAGACTCC----G-----ATTTGCAA 827
Query 798 TAA--GCAACCATGTAGAGATT 817
||| |||||||||||||||||
Sbjct 828 TAAAAGCAACCATGTAGAGATT 849
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1 ATCTCGTTCCAACGTCTTCGCAAAAGAA 28
||||||||||||||||||||||||||||
Sbjct 1 ATCTCGTTCCAACGTCTTCGCAAAAGAA 28
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42196683480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5