BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488468
Length=457
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16160.1 | Symbols: | unknown protein; Has 30201 Blast hits... 590 5e-168
> AT5G16160.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5275695-5276606
REVERSE LENGTH=550
Length=550
Score = 590 bits (319), Expect = 5e-168
Identities = 424/472 (90%), Gaps = 18/472 (4%)
Strand=Plus/Plus
Query 1 GCCGACGGAGAAGCCATGGCGACGACGAGGAGGACAAGCGAGGAAATCGACAGAGAAGCA 60
|||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||
Sbjct 16 GCCGACGGAGAAGCCATGGCGACGAC---GAGGACAAACGAGGAAATTGACAGAGAAGCA 72
Query 61 GAGGAGAATCGTAAAGAAGCTTTATTAGCCTCTACACTATCTCTTCAACCCAATTTTAAT 120
||||||||||| ||||||||| ||||||| || |||||||||||||||||||||||||||
Sbjct 73 GAGGAGAATCGAAAAGAAGCTCTATTAGCTTCAACACTATCTCTTCAACCCAATTTTAAT 132
Query 121 CGTTCCAACGTCAGTCAGAAACAAATTTCGAAATTACAGGAGCTACACAAGAGACGTATG 180
|| |||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 133 CGATCCAACCTCACCCAGAAACAAATTTCCAAATTACAGGAGCTACACAAGAGACGTATG 192
Query 181 CAAATTAAAGCCAATACAAAGATTCATAAGAA-A--CCTAAAGCGAGCAAGAATTCTCAG 237
||||| ||||| ||| |||||||||||||||| | ||||||||||||||||||||||||
Sbjct 193 CAAATAAAAGCTAATGCAAAGATTCATAAGAAGAAACCTAAAGCGAGCAAGAATTCTCAG 252
Query 238 A-T----C-A---AAGATGGGGAAAGCTCTAACAAGTTGAAAGAATCAACTTC--CTT-T 285
| | | | ||||||| ||||||||||| |||||||||||| ||||||| ||| |
Sbjct 253 AGTAAAGCGATCGAAGATGGCGAAAGCTCTAAAAAGTTGAAAGAACCAACTTCTTCTTCT 312
Query 286 TCTTCTACCTTAGAAGAACAGAATCATAGTAAGACACTAGGCACAACACCAAAGAAGCCA 345
|||||||||||||||||||||||||||| |||||| ||| |||| ||| |||||||||
Sbjct 313 TCTTCTACCTTAGAAGAACAGAATCATAACAAGACAGTAGTCACAGTACCGAAGAAGCCA 372
Query 346 CAAAAACTGTTTTGGGGGCTAGATACTAGGGAAAGGTGGGAAAGGAAAGCCAACATGTAG 405
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 373 CAAAAACTGTTTTGGGGGCTAGATACCAGGGAGAGGTGGGAAAGGAAAGCCAACATGTAG 432
Query 406 CGGTCATGAAGCGATTTCTCGTTATTGATAACTTCGTCCATTGTACAATTTA 457
||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 433 TGGTCATGAAAAGATTTCTCGTTATTGATAACGTCGTCCATTGTACAATTTA 484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21765935317
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5