BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488476
Length=1889
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16260.1 | Symbols: ELF9 | RNA binding (RRM/RBD/RNP motifs) ... 2854 0.0
> AT5G16260.1 | Symbols: ELF9 | RNA binding (RRM/RBD/RNP motifs)
family protein | chr5:5311207-5315767 FORWARD LENGTH=1987
Length=1987
Score = 2854 bits (1545), Expect = 0.0
Identities = 1745/1838 (95%), Gaps = 27/1838 (1%)
Strand=Plus/Plus
Query 1 CTCTGTATCCAAACAAGGTCAGGGTCCTCTACCGTCTTCCTCCTGCTTCCGCCA---TT- 56
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 5 CTCTATATCCAAACAAGGTCAGGGTCCTCTACCGTCTTCCTCCTGCTTCCGCCATTCTTC 64
Query 57 ---C---T--TCGTCGTCTCTCGAACGCGTCACTCTTTTAGTCGGTTTTGTCGTT-TACA 107
| | ||||||||||||||||||||||||||| ||||||||||||||||| | ||
Sbjct 65 GGACTTTTCGTCGTCGTCTCTCGAACGCGTCACTCTTATAGTCGGTTTTGTCGTTGT-CA 123
Query 108 GTAATTTGCGATTTTTTGAAGGTTAACGAGAAACAAAAATGTCCGACACTGATAATCTAC 167
||||||||||| |||||||||||||||||| ||||||||| ||| ||||||||||||
Sbjct 124 GTAATTTGCGA-TTTTTGAAGGTTAACGAG----AAAAATGTCAGACTCTGATAATCTAC 178
Query 168 AGCTTCCACCATCATCGACAGGGGCAACAGTTGCAGCTACTGATCTTGGTTGGTACATTC 227
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 179 AGCTTCCACCATCATCGACAGGGGCAACAGTTGCAGCTACTGATGTTGGTTGGTACATTC 238
Query 228 TTGGTGAAAATCAGCAGAGCCTGGGCCCATATACTTTCTCTGAGCTTTGTGACCATTTCA 287
|||||||||||||||||| ||||||||| ||||||||||||||||| ||| |||||||||
Sbjct 239 TTGGTGAAAATCAGCAGAACCTGGGCCCTTATACTTTCTCTGAGCTATGTAACCATTTCA 298
Query 288 GGAATGGTTACCTACTAGAAACTACCCTTGTCTGGGCTGACGGAAGAAGCGAATGGCAAC 347
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 299 GGAATGGTTACCTACTAGAAACTACTCTAGTCTGGGCTGACGGAAGAAGCGAATGGCAGC 358
Query 348 CACTATCTGCCATTCCCGAGTTGATGTCAAGGATATCCGAAGCTGAGATTGTCTATCCGG 407
|||| |||||||| ||||| || |||||||||||||||| ||||||||||| |||||| |
Sbjct 359 CACTTTCTGCCATCCCCGATTTAATGTCAAGGATATCCGGAGCTGAGATTGCCTATCCAG 418
Query 408 CTGTAGGTGCATCTGGGCCGATAAATGGATCTAATGCTGGAACCGA-GCAAGAGAAGCAA 466
|||||||| |||||||| ||||||||||||||||||||||||| | |||||||||||||
Sbjct 419 CTGTAGGTTCATCTGGGTTGATAAATGGATCTAATGCTGGAACC-AGGCAAGAGAAGCAA 477
Query 467 GATTATACTGCCTCTGCTAGTACTGAGGATGAATTTCAGAAATGGCAGAGAGAGATTAAA 526
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 478 GATTATACTGCCTCTGCTAGTACTGAGGATGAATTTGAGAAATGGCAGAGAGAGATTAAA 537
Query 527 GAAGCAGAAG-AGGAGGCTGAAAGGTTGAAAAATGGCTCTGTCTCTGCTACTGAGCTTGT 585
|| ||||||| | ||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 538 GACGCAGAAGCA-GAGGCTGAAAGGTTGAAAAATGGTTCTGTCTCTGGTACTGAGCTTGT 596
Query 586 TGAAGATGATCATGAAAGGGCTTCTTCACCACCTGAGGGCGAAGATGAGTTCACAGATGA 645
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGAAGATGATCATGAAAGGGCATCTTCACCACCTGAGGGCGAAGATGAGTTCACAGATGA 656
Query 646 TGATGGAACGAGATATAAATGGGACAGAGCTCGTAGGGTATGGGTTCCCCAGGACGATCC 705
||||||||| | |||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 657 TGATGGAACAAAATATAAATGGGACAGAGCTCGTAGAGTATGGGTTCCTCAGGACGATCC 716
Query 706 ACCACTGGGTAGCGTTGACCCGTATGGACTCGAAGAGATGACCTTTGCTAAGGAAGACGA 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 ACCACTGGGTAGCGTTGACCCGTATGGACTCGAAGAGATGACCTTTGCTAAGGAAGACGA 776
Query 766 AGTATTTCCAACGATTAACATTCTTGATACTTCTGTTGATAAAAAGGATGCCGCTAAGGA 825
|||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 777 AGTATTTCCAACAATTAACATTCTTGATACTTCTGTTGATAAGAAGGATGCCTCTAAGGA 836
Query 826 TGATGTGGCTGGTAAGAAAGAAGAAGATGGCTCTGATGAAACAGCTGAAATAAACAGTAA 885
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 837 TGACGTGGCTGGTAAGAAAGAAGAAGATGGCTCTGATGAAACCGCTGAAATAAACAGTAA 896
Query 886 CGGCAAGAGAAAGCTACCAGAGCCAGAAACTGAAAAGAAGGAACCAAACAAGCCTCCAGA 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 CGGCAAGAGAAAGCTACCAGAGCCAGAAACTGAAAAGAAGGAACCAAACAAGCCTCCAGA 956
Query 946 TTCGTGGTTTGAGTTAAAAGTCAACCCACATATTTATGTTACTGGGTTGCCCGATGATGT 1005
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 957 TTCGTGGTTTGAGTTAAAAGTAAACCCACATATTTATGTTAATGGGTTGCCCGATGATGT 1016
Query 1006 CACCCTCGAGGAAGTAGCTGAAGTTTTTTCTAAATGCGGCATAATTAAGGAGGATGAAAC 1065
|||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 1017 CACCATCGAGGAAGTAGCTGAAGTTTTTTCTAAGTGCGGTATAATTAAGGAGGATGACAC 1076
Query 1066 TGGCAAGCCTCGGATAAAGCTTTACAGTGACAAGGGGACAGGAAAATTAAAAGGCGATGC 1125
|||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1077 TGGCAAGCCTCGCATAAAGCTATACAGTGACAAGGCGACAGGAAAATTAAAAGGCGATGC 1136
Query 1126 TCTTATCACGTATATGAAGGAGCCCTCAGTGGATCTGGCAATTAAAATCTTAGATGGGGC 1185
||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1137 TCTTATCTCCTATATGAAGGAGCCCTCAGTGGATCTGGCAATTAAAATCTTAGACGGGGC 1196
Query 1186 TCCGTTACGTCTTGCTGACAAGCTCCTAATGTCAGTTTCTCGAGCTAAGTTTGAGCAGAA 1245
||||||||||| |||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1197 TCCGTTACGTCCTGCTGATAAGCTCCTCATGTCAGTTTCTCGAGCTAAGTTCGAGCAGAA 1256
Query 1246 AGGGGAGAGATTCATAACTAAGCAAACCGACAACAAGAAGAAAAAGAAGCTGAAAAAGGT 1305
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1257 AGGGGAGAGATTTATAACTAAGCAAACCGACAACAAGAAGAAAAAGAAGCTTAAAAAGGT 1316
Query 1306 CGAGCAAAAGTTGCTTGGATGGGGTGGTACAGATGATGCTAAGGTCTCAATACCTGCAAC 1365
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1317 CGAGCAAAAGTTGCTTGGATGGGGTGGTACAGATGATTCTAAGGTCTCAATACCTGCAAC 1376
Query 1366 GGTTGTTCTGCGCTACATGTTCAGTCCAGCTGAATTGA-GGACTGATGAGGATCTGGTTG 1424
||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||
Sbjct 1377 GGTTGTTCTGCGCTACATGTTCAGTCCAGCTGAGTTGATGG-CTGATGAGGATCTGGTTG 1435
Query 1425 CTGAGTTAGAGGAAGATGTGAAAGAGGAGAGTTTGAAGCATGGACCGTTTGACTCAGTGA 1484
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1436 CTGAGTTAGAGGAAGACGTGAAAGAGGAGAGTTTGAAGCATGGACCGTTCGACTCAGTGA 1495
Query 1485 AGGTATGTGAGCATCATCCACAGGGTGTTGTTCTTGTAAGATTCAAGGATCGGAGAGATG 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 AGGTATGTGAGCATCATCCACAGGGTGTTGTTCTTGTAAGATTCAAGGATCGGAGAGATG 1555
Query 1545 CACAGAAATGTATAGAAGCAATGAACGGTCGATGGTATGCAAAGAGACAGATACATGCGA 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 CACAGAAATGTATAGAAGCAATGAACGGTCGATGGTATGCAAAGAGACAGATACATGCGA 1615
Query 1605 GCCTCGATGATGGATCAGTGAACCATGCTACAGTTAGGGATTTTGATTTGGAAGCCGAAC 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1616 GCCTCGATGATGGATCAGTGAACCATGCTACAGTTAGGGATTTTGATTTGGAAGCGGAAC 1675
Query 1665 GGTTAGATCAGTTTTCAGCTGAACTGGAAGCTGATGAGTAAAAA-CAAAAGCACAATGAT 1723
|||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1676 GGTTAGATCAGTTTGCAGCTGAACTGGAAGCTGCTGAGTAAAAAACAAAAGCACAATGAT 1735
Query 1724 CTAAAGCCGGGAAGATTTTGGATGATTATTCTGGGAAACTCAGGTTTCTGATGTAAATCA 1783
||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1736 CTAAAGCTGGGAAGATTT-GGATTATTATTCTGGGAAACTCAGGTTTCTGATGTAAATCA 1794
Query 1784 GTAGGCACAGACACATCCGAATCAGACCAAGGCAAACC 1821
|||||||||||||||| |||||||||||| |||||||
Sbjct 1795 CTAGGCACAGACACATCTGAATCAGACCAACGCAAACC 1832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93523615335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5