BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488480
Length=1734
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16290.1 | Symbols: VAT1 | VALINE-TOLERANT 1 | chr5:5333764-... 2508 0.0
> AT5G16290.1 | Symbols: VAT1 | VALINE-TOLERANT 1 | chr5:5333764-5337744
FORWARD LENGTH=1804
Length=1804
Score = 2508 bits (1358), Expect = 0.0
Identities = 1629/1752 (93%), Gaps = 50/1752 (3%)
Strand=Plus/Plus
Query 1 TCACCCAAAGTTTCCctctttctctcttcttcttctctctGCTGTTTTCCGCCTCACACC 60
|||||||||||||| |||||||||||||| || || |||||||||||||||||||||||
Sbjct 40 TCACCCAAAGTTTCTCTCTTTCTCTCTTC-TC--CT-TCTGCTGTTTTCCGCCTCACACC 95
Query 61 ATTACTCTCCCA-ACAATGGCGGCGACGGCGACTGCTGCTTCACTA-T-TC--C-CATCT 114
|||||||||||| | ||||||||||||| |||||||| ||||| || | || | | |||
Sbjct 96 ATTACTCTCCCAGA-AATGGCGGCGACGACGACTGCTACTTCATTATTCTCATCTCGTCT 154
Query 115 T-ACTTCCAGAATCAGATTAAAGTTTATGGCTTTCCGGCGAAAACCCCCAACTCCGTGCA 173
| ||||||||||||||| | ||| |||||| |||||||||||||||||||||||| ||||
Sbjct 155 TCACTTCCAGAATCAGAATCAAGGTTATGGGTTTCCGGCGAAAACCCCCAACTCCCTGCA 214
Query 174 AGTAACTCAAATCATCGACGGGAGGAAGATGAGAAATGCCACTGTTCTCTCTGCTGCCTC 233
||||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 215 AGTAAATCAGATCATCGACGGGAGGAAGATGAGGAATGCCACTGTTCTCTCAGCTGCTTC 274
Query 234 CACCGATAAAGCCATCACCACCGCTCAATCTGTAGCTGCGACGGCTAGTGATAGAGTAAG 293
||| ||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||
Sbjct 275 CACTGATAAAGCCATCACCACTGCTCAATCTGTAGCTCCGACGGCTTGTGATAGAGTAAG 334
Query 294 GAGGCATACCATCTCGGTGTTTGTGGGTGATGAGAGCGGTATAATAAACCGGATTGCTGG 353
||||||||| ||||||||||||||||| |||||||||||||||||||| | ||||||||
Sbjct 335 GAGGCATACAATCTCGGTGTTTGTGGGCGATGAGAGCGGTATAATAAATAGAATTGCTGG 394
Query 354 AGTGTTTGCTAGAAGGGGATACAATATTGAGTCCCTTGCCGTGGGATTGAATGAAGACAA 413
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 395 AGTATTTGCTAGAAGGGGATACAATATTGAGTCCCTTGCCGTAGGATTGAATGAAGACAA 454
Query 414 GGCTCTGTTTACTATCGTTGTTCTTGGGACAGACAAAGTCTTGCAACAAGTCGTAGAACA 473
||||||||||||||| ||||||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct 455 GGCTCTGTTTACTATAGTTGTTCTTGGAACAGATAAAGTCTTGCAGCAAGTTGTAGAACA 514
Query 474 GCTTAACAAGCTCGTCAATGTCATCAAGGTGGAAGATCTCTCCAAGGAGCCCCATGTAGA 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 GCTTAACAAGCTCGTCAATGTCATCAAGGTGGAAGATCTCTCCAAGGAGCCCCATGTAGA 574
Query 534 ACGTGAATTAATGCTCATTAAACTTAACGCTGATCCAAGCACCCGCTCAGAGATCATGTG 593
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 ACGTGAGTTAATGCTCATTAAACTTAACGCTGATCCAAGCACCCGCTCAGAGATCATGTG 634
Query 594 GTTGGTGGATATCTTTAGAGCAAAAATCGTGGATACCTCAGAGCACTCTCTAACGATTGA 653
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 635 GTTGGTGGATATCTTTAGAGCAAAAATCGTGGATACCTCAGAGCAATCTCTAACGATTGA 694
Query 654 GGTAACTGGAGACCCAGGAAAAATGGTTGCACTAACGACAAACTTAGAGAAGTTTGGAAT 713
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 GGTAACTGGAGACCCTGGAAAAATGGTTGCACTAACGACAAACTTAGAGAAGTTTGGAAT 754
Query 714 AAAAGAAATTGCAAGAACAGGGAAGATTGCTCTGAGACGGGAAAAGATGGGAGAAACCGC 773
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 AAAAGAAATTGCGAGAACAGGGAAGATTGCTCTGAGACGGGAAAAGATGGGAGAAACCGC 814
Query 774 TCCGTTTTGGAGATTTTCAGCGGCATCATACCCACATCTTGTAAAGGAATCATCATCTCA 833
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 815 TCCGTTTTGGAGATTTTCAGCGGCATCATATCCACATCTTGTAAAGGAATCATC-TC--A 871
Query 834 TGAAACTGTTGCAGAGAAAACAAAGCTAGCATTGAATGGAAATGGCAATGCATCATCGGG 893
||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||
Sbjct 872 TGAGACTGTTGCAGAGAAAACAAAACTAGCATTGACTGGAAATGGCAATGCATCATCCGG 931
Query 894 GGGTGACGTTTATCCAGTGGAACCCTATAATGATTTCAAACCGGTCCTTGACGCTCATTG 953
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 932 GGGTGACGTTTATCCAGTGGAACCCTATAACGATTTCAAACCGGTCCTTGACGCTCATTG 991
Query 954 GGGAATGGTCTATGACGAAGATTCGAGCGGACTCCGGTCCCACACATTATCTTTACTTGT 1013
|||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 992 GGGAATGGTCTACGATGAAGATTCGAGCGGACTTCGGTCCCACACATTATCTTTACTTGT 1051
Query 1014 GGCCAACGTTCCCGGTGTTCTCAATCTAATAACTGGAGCTATCTCCAGGAGAGGTTATAA 1073
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1052 GGCCAACGTTCCCGGAGTTCTCAATCTAATAACTGGAGCTATCTCTAGAAGAGGTTATAA 1111
Query 1074 CATCCAGAGTCTAGCTGTTGGTCCTGCTGAGAAAGAGGGCTTATCTCGGATTACAACAGT 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 CATCCAGAGTCTAGCTGTTGGTCCTGCTGAGAAAGAGGGCTTATCTCGGATTACAACAGT 1171
Query 1134 TATCCCCGGAACTGATGAAAATATAGACAAATTGGTTAGGCAGCTCCAGAAGTTGATTGA 1193
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1172 TATTCCCGGAACTGATGAAAATATAGATAAATTGGTTAGGCAGCTCCAGAAGTTGATTGA 1231
Query 1194 TCTTCAGGAGATACAAAATATAACGCACATGCCATTTGCGGAGCGAGAACTGATGCTCAT 1253
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 TCTTCAGGAGATCCAAAATATAACGCACATGCCATTTGCGGAGCGAGAACTGATGCTCAT 1291
Query 1254 CAAAGTAGCTGCTGATACTTCTGCAAGGAGAGATGTTCTCGATATTGCTCAAGTTTTCCG 1313
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1292 CAAAGTAGCTGCTGATACTTCTGCAAGGAGAGATGTTTTAGATATTGCTCAAGTTTTCCG 1351
Query 1314 TGCTAAAGCCATTGATGTCTCTGATCATACTATCACCCTTGAGGTTACAGGGGATCTTAG 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1352 TGCTAAAGCCATTGATGTCTCTGATCATACTATCACCCTTGAGGTTACAGGGGATCTCAG 1411
Query 1374 AAAAATGTCTGCACTACAAACGCAGTTAGAGGCCTATGGACTCTGCGAGGTGGCTAGGAC 1433
||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1412 AAAAATGTCTGCATTACAAACGCAGTTAGAGGCCTATGGAATCTGCGAGGTGGCTCGGAC 1471
Query 1434 AGGAAGAGTGGCATTGGTAAGAGAATCTGGAGTGGATTCGACTTATCTTCGTGGATACTC 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1472 AGGAAGAGTGGCATTGGTAAGAGAATCTGGAGTGGATTCGACTTATCTTCGTGGATACTC 1531
Query 1494 TCTTCCTTTGTAGTTCCAAAGGTTAGATGAAAGGATCTT-CTTGTGCAGAGGACTT-ACC 1551
|||||||||||||||| | ||| || ||| ||| | | || || ||| |
Sbjct 1532 TCTTCCTTTGTAGTTC------T-AGA-GA--GGA-CTTGCC-G--CA-AG--CTTCAGT 1574
Query 1552 G-CAAGCTTCAGTGTA--CTAGTCAAAAGGACTGCACATTGTTT-----TCTGTGATTGA 1603
| | | ||| || | ||||||||||||||||||| |||||| |||||||||||
Sbjct 1575 GTC--G-TTCC-TGGAAACTAGTCAAAAGGACTGCACGTTGTTTCAGCATCTGTGATTGA 1630
Query 1604 TTGCTTCCTCACGAGCCATGGCGTTTGGAGTTGTTGTTATAGGAGGACCTGTTT-AGTGA 1662
||||||||||||||| ||||||| || |||||||||||||||||||| || ||| | |||
Sbjct 1631 TTGCTTCCTCACGAGTCATGGCGCTTCGAGTTGTTGTTATAGGAGGAGCTATTTTA-TGA 1689
Query 1663 ACTAAAAATAAATAATAATGTTTGTTCCGTTAGATTAGTTTTGAATACTTTTCTCAAATG 1722
|||||||||||||||| || |||||||||||| |||||||||| ||||| || |||||
Sbjct 1690 ACTAAAAATAAATAATTATCTTTGTTCCGTTAAATTAGTTTTGCATACTAATC--AAATG 1747
Query 1723 TAGAACACTGTT 1734
||||||||||||
Sbjct 1748 TAGAACACTGTT 1759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85742530860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5