BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488484
Length=1184
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16310.1 | Symbols: UCH1 | Peptidase C12, ubiquitin carboxyl... 1766 0.0
> AT5G16310.1 | Symbols: UCH1 | Peptidase C12, ubiquitin carboxyl-terminal
hydrolase 1 | chr5:5342391-5344285 REVERSE LENGTH=1325
Length=1325
Score = 1766 bits (956), Expect = 0.0
Identities = 1055/1102 (96%), Gaps = 10/1102 (1%)
Strand=Plus/Plus
Query 28 CATGTCTTGGCTTCCTGTAGAATCTGATCCTGGTATTTTCACTGAGATTATACAACAGAT 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 132 CATGTCTTGGCTTCCTGTAGAATCTGATCCTGGTATTTTCACTGAGATTATACAACAAAT 191
Query 88 GCAAGTGAAAGGTGTGCAAGTTGAGGAATTGTATTCCTTGGACTTTAATTCTCTGGAAGA 147
|||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||
Sbjct 192 GCAAGTGAAAGGTGTGCAGGTTGAGGAATTGTATTCCTTGGACTTCAACTCTCTGGATGA 251
Query 148 AATAAGACCTGTATATGGATTGATATTGCTTTACAAGTGGCGTCCAGAAGAAAAGGAGAA 207
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 AATAAGACCTGTCTATGGATTGATATTGCTTTACAAGTGGCGTCCAGAAGAAAAGGAGAA 311
Query 208 TCGTGTTGTTATCACAGAGCCAAACCCAAATTTCTTCTTTGCAAGCCAGATAATCAACAA 267
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 312 TCGTGTTGTCATCACAGAGCCAAACCCGAATTTCTTCTTTGCAAGCCAGATAATCAACAA 371
Query 268 TGCTTGTGCGACCCAAGCGATATTATCAGTTCTCATGAACTCTTCGAGTATTGATATTGG 327
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 372 TGCTTGTGCGACCCAAGCGATATTATCAGTCCTCATGAACTCTTCGAGTATTGATATTGG 431
Query 328 CTCAGAACTATCAGAACTGAAACAATTCGCCAAAGAATTCCCACCTGAACTGAAAGGTTT 387
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 432 CTCAGAACTATCAGAACTGAAACAATTCGCCAAAGAATTTCCTCCTGAACTGAAAGGTTT 491
Query 388 AGCCATCAACAACAATGAGGCGATACGTGCAGCTCACAACACATTTGCCAGGTCTGACCC 447
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 492 AGCCATCAACAACAATGAGGCAATACGTGCAGCTCACAACACATTTGCCAGGCCTGACCC 551
Query 448 GTCTTCCACCATGGAAGAAGAAGAATTAGCTGCTGCGAAAAATCTAGACGAAGATGATGA 507
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 552 GTCTTCCATCATGGAAGATGAAGAATTAGCTGCTGCGAAAAATCTAGACGAAGATGATGA 611
Query 508 TGTGTATCATTACATCAGCTACTTACCTGTTGATGGTATCTTATATGAGCTCGATGGTCT 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 TGTGTATCATTACATCAGCTACTTACCTGTTGATGGTATCTTATATGAGCTCGATGGTCT 671
Query 568 CAAAGAAGGACCCATTAGTCTTGGACAGTGTCTGGGTGAGCCAGAAGGAACCGAGTGGCT 627
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 672 TAAAGAAGGACCCATTAGTCTTGGACAGTGTCTGGGTGAGCCAGAAGGAATCGAGTGGCT 731
Query 628 CAGAATGGTCCAACCTGTGGTACAAGAACGGATTGACTGGTATTCGCAGAATGAGATTCG 687
||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||
Sbjct 732 CAGAATGGTCCAACCTGTGGTACAAGAGCAGATTGACCGGTATTCGCAGAATGAGATTCG 791
Query 688 GTTTAGTCTCTTAGCTGTAGTTAAGAACAGGAAAGAGATGTATGTAGCTGAACTGAAAGA 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 GTTTAGTCTCTTAGCTGTAGTTAAGAACAGGAAAGAGATGTATGTAGCTGAACTGAAAGA 851
Query 748 GTATCAAAGAAAGCGAGAGAGGATTTTGCAGCAGTTAGGTGCTTTGCAAGCTGATAAATA 807
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 852 GTATCAAAGAAAGCGAGAGAGGGTTTTGCAGCAGTTAGGTGCTTTGCAAGCTGATAAATA 911
Query 808 CGCTGAGAAAAGCAGTTATGAGGCTCTCGATAG-GTCTCTTTCTGAAGTCAATATCGGGA 866
|||||||||||||||||| |||||||| ||||| | ||||| ||||||||||||||||
Sbjct 912 CGCTGAGAAAAGCAGTTACGAGGCTCTTGATAGAGAG-CTTTCGGAAGTCAATATCGGGA 970
Query 867 TAGAGACTGTTTCGCAGAAGATTGTATTGGAGGAGGAGAAGTCTAAGAACTGGAAGAAAG 926
||||||||||||| || ||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 971 TAGAGACTGTTTCACAAAAGATTGTAATGGAGGAGGAGAAATCTAAGAACTGGAAGAAAG 1030
Query 927 AGAACATGAGAAGGAAACACAACTATGTCCCTTTCCTCTTCAATTTCCTCAAGATTCTTG 986
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1031 AGAACATGAGAAGGAAACACAACTATGTCCCTTTCCTCTTCAACTTCCTCAAGATTCTTG 1090
Query 987 CTGACAAGAAGAAGCTGAAACCTCTCATTGCTAAGCATAATCCCTAAATCTGCTTTGCCA 1046
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1091 CTGACAAGAAGAAGCTGAAACCTCTCATTGCTAAGCACCATCCCTAAATCTGCTTTACCG 1150
Query 1047 GGATGTTAACTTGGTAGAAATCAGATGTTTTAGTGATCTGAATAC--------CGTGGTT 1098
||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1151 GGATGTTAACTTGATAGAAATCAGATGTTTTAGTGATCTGAATACTGTGGTGGCGTGGTT 1210
Query 1099 ATATGTAGCAAAACTTTAACTT 1120
||||||||| ||||||||||||
Sbjct 1211 ATATGTAGCCAAACTTTAACTT 1232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58132231110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5