BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488484 Length=1184 Score E Sequences producing significant alignments: (Bits) Value AT5G16310.1 | Symbols: UCH1 | Peptidase C12, ubiquitin carboxyl... 1766 0.0 > AT5G16310.1 | Symbols: UCH1 | Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 | chr5:5342391-5344285 REVERSE LENGTH=1325 Length=1325 Score = 1766 bits (956), Expect = 0.0 Identities = 1055/1102 (96%), Gaps = 10/1102 (1%) Strand=Plus/Plus Query 28 CATGTCTTGGCTTCCTGTAGAATCTGATCCTGGTATTTTCACTGAGATTATACAACAGAT 87 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 132 CATGTCTTGGCTTCCTGTAGAATCTGATCCTGGTATTTTCACTGAGATTATACAACAAAT 191 Query 88 GCAAGTGAAAGGTGTGCAAGTTGAGGAATTGTATTCCTTGGACTTTAATTCTCTGGAAGA 147 |||||||||||||||||| |||||||||||||||||||||||||| || |||||||| || Sbjct 192 GCAAGTGAAAGGTGTGCAGGTTGAGGAATTGTATTCCTTGGACTTCAACTCTCTGGATGA 251 Query 148 AATAAGACCTGTATATGGATTGATATTGCTTTACAAGTGGCGTCCAGAAGAAAAGGAGAA 207 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 252 AATAAGACCTGTCTATGGATTGATATTGCTTTACAAGTGGCGTCCAGAAGAAAAGGAGAA 311 Query 208 TCGTGTTGTTATCACAGAGCCAAACCCAAATTTCTTCTTTGCAAGCCAGATAATCAACAA 267 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 312 TCGTGTTGTCATCACAGAGCCAAACCCGAATTTCTTCTTTGCAAGCCAGATAATCAACAA 371 Query 268 TGCTTGTGCGACCCAAGCGATATTATCAGTTCTCATGAACTCTTCGAGTATTGATATTGG 327 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 372 TGCTTGTGCGACCCAAGCGATATTATCAGTCCTCATGAACTCTTCGAGTATTGATATTGG 431 Query 328 CTCAGAACTATCAGAACTGAAACAATTCGCCAAAGAATTCCCACCTGAACTGAAAGGTTT 387 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 432 CTCAGAACTATCAGAACTGAAACAATTCGCCAAAGAATTTCCTCCTGAACTGAAAGGTTT 491 Query 388 AGCCATCAACAACAATGAGGCGATACGTGCAGCTCACAACACATTTGCCAGGTCTGACCC 447 ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 492 AGCCATCAACAACAATGAGGCAATACGTGCAGCTCACAACACATTTGCCAGGCCTGACCC 551 Query 448 GTCTTCCACCATGGAAGAAGAAGAATTAGCTGCTGCGAAAAATCTAGACGAAGATGATGA 507 |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 552 GTCTTCCATCATGGAAGATGAAGAATTAGCTGCTGCGAAAAATCTAGACGAAGATGATGA 611 Query 508 TGTGTATCATTACATCAGCTACTTACCTGTTGATGGTATCTTATATGAGCTCGATGGTCT 567 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 612 TGTGTATCATTACATCAGCTACTTACCTGTTGATGGTATCTTATATGAGCTCGATGGTCT 671 Query 568 CAAAGAAGGACCCATTAGTCTTGGACAGTGTCTGGGTGAGCCAGAAGGAACCGAGTGGCT 627 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 672 TAAAGAAGGACCCATTAGTCTTGGACAGTGTCTGGGTGAGCCAGAAGGAATCGAGTGGCT 731 Query 628 CAGAATGGTCCAACCTGTGGTACAAGAACGGATTGACTGGTATTCGCAGAATGAGATTCG 687 ||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||| Sbjct 732 CAGAATGGTCCAACCTGTGGTACAAGAGCAGATTGACCGGTATTCGCAGAATGAGATTCG 791 Query 688 GTTTAGTCTCTTAGCTGTAGTTAAGAACAGGAAAGAGATGTATGTAGCTGAACTGAAAGA 747 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 792 GTTTAGTCTCTTAGCTGTAGTTAAGAACAGGAAAGAGATGTATGTAGCTGAACTGAAAGA 851 Query 748 GTATCAAAGAAAGCGAGAGAGGATTTTGCAGCAGTTAGGTGCTTTGCAAGCTGATAAATA 807 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 852 GTATCAAAGAAAGCGAGAGAGGGTTTTGCAGCAGTTAGGTGCTTTGCAAGCTGATAAATA 911 Query 808 CGCTGAGAAAAGCAGTTATGAGGCTCTCGATAG-GTCTCTTTCTGAAGTCAATATCGGGA 866 |||||||||||||||||| |||||||| ||||| | ||||| |||||||||||||||| Sbjct 912 CGCTGAGAAAAGCAGTTACGAGGCTCTTGATAGAGAG-CTTTCGGAAGTCAATATCGGGA 970 Query 867 TAGAGACTGTTTCGCAGAAGATTGTATTGGAGGAGGAGAAGTCTAAGAACTGGAAGAAAG 926 ||||||||||||| || ||||||||| ||||||||||||| ||||||||||||||||||| Sbjct 971 TAGAGACTGTTTCACAAAAGATTGTAATGGAGGAGGAGAAATCTAAGAACTGGAAGAAAG 1030 Query 927 AGAACATGAGAAGGAAACACAACTATGTCCCTTTCCTCTTCAATTTCCTCAAGATTCTTG 986 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1031 AGAACATGAGAAGGAAACACAACTATGTCCCTTTCCTCTTCAACTTCCTCAAGATTCTTG 1090 Query 987 CTGACAAGAAGAAGCTGAAACCTCTCATTGCTAAGCATAATCCCTAAATCTGCTTTGCCA 1046 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 1091 CTGACAAGAAGAAGCTGAAACCTCTCATTGCTAAGCACCATCCCTAAATCTGCTTTACCG 1150 Query 1047 GGATGTTAACTTGGTAGAAATCAGATGTTTTAGTGATCTGAATAC--------CGTGGTT 1098 ||||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct 1151 GGATGTTAACTTGATAGAAATCAGATGTTTTAGTGATCTGAATACTGTGGTGGCGTGGTT 1210 Query 1099 ATATGTAGCAAAACTTTAACTT 1120 ||||||||| |||||||||||| Sbjct 1211 ATATGTAGCCAAACTTTAACTT 1232 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58132231110 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5