BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488485
Length=1432
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16320.1 | Symbols: FRL1 | FRIGIDA like 1 | chr5:5344502-534... 1857 0.0
> AT5G16320.1 | Symbols: FRL1 | FRIGIDA like 1 | chr5:5344502-5346019
FORWARD LENGTH=1518
Length=1518
Score = 1857 bits (1005), Expect = 0.0
Identities = 1302/1439 (90%), Gaps = 46/1439 (3%)
Strand=Plus/Plus
Query 1 AAACAATGACGACGACTGAGACTATCGCCACCGCGATAAATCAGATTGATGAGAAGAAAG 60
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 AAACAATGACGGCGAGTGAGACTATCGCCACCGCGATAAATCAGATTGATGAGAAGAAGG 60
Query 61 AAAAGCTAAAGAAAGCTTTCGACGATCTTCAAGCTCATCGCTCTCTCCTTTCACCGTCCT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 AAAAGCTAAAGAAAGCTTTCGACGATCTTCAAGCTCATCGCTCTCTCCTTTCACCGTCTT 120
Query 121 TCTCTCTTTCCTGGTCTGAGATCGATTCTCACTTTTCCTCCCTCCAATCCTCCCTCGCTA 180
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 121 TCTCACTTTCCTGGTCTGAGATCGATTCTCACTTTTCCTCTCTCCAATCCTCCCTTGCTA 180
Query 181 ACCGTTTCCGCCTCCTCCAATCTACAGCTCCTTTGCAAGATGATTCGTTTAGACTCGACA 240
|||||||||||||||||| |||||| |||||||| || ||||||||| |||| |||||
Sbjct 181 GCCGTTTCCGCCTCCTCCACTCTACATCTCCTTTGGAACATGATTCGTATAGAATCGACG 240
Query 241 CTTCT-A--C-------T--TCTTCGTCGGAGGAGGTATCGGAGCAACCCGTTGTTGAGC 288
||||| | | | || || ||||||||||||||||||||||||||||||||||
Sbjct 241 CTTCTGATGCAGGGAAATCGTCGTCTTCGGAGGAGGTATCGGAGCAACCCGTTGTTGAGC 300
Query 289 CGGAGTTGATAGCGTTGTGTGAGAAGATGGACGGAATTGGTTTGAGCAAGTATTTGATTG 348
||||||||| ||| |||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 301 CGGAGTTGAGAGCCTTGTGTGAGAAGATTGACGGAATTGGTTTGATTAAGTATTTGATT- 359
Query 349 TTCA-ATGGGATGATGACGCTCCTCTCAATCAGGAAGTTTCTGCAGCGATTCGTTACTCT 407
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AGGATATGGGATGATGAAACTCCTCTCAATCAGGAAGTTTCTGCAGCGATTCGTTACTCT 419
Query 408 CCGGATCCGGCGTCCA-------T---G-G--TGAA----C---C-ACACTCCGTCGTCA 446
|||||| ||||||||| | | | |||| | | |||| ||||| |||
Sbjct 420 CCGGATACGGCGTCCATGGTGCTTGACGCGATTGAAGGTTCGAACTACACACCGTCATCA 479
Query 447 TCGGGAAAATCATTCGATGTAAGGAGAGTTTTCGTTTTGTTAATGGAAGTTTTGATTGAG 506
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TCGGGAAGATCATTCGATGTAAGGAGAGTTTTCGTTTTGTTAATGGAAGTTTTGATTGAG 539
Query 507 AGT-AATGCGAATATCACTGTTGATACGAGAAATAGAGCTAAGAAACTGGCTTACGGTTG 565
| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 540 A-TCAATGCGAATATCACTGTTGATACGAGAAATAGAGCTAAGAAACTGGCTTACCATTG 598
Query 566 GAAAACGAAGATAGATACT-AAGCCTTTCGAGGCGTTGGTGTTTCTGCATTTAGTCGCAG 624
|||| | ||| | | | | ||||||||||||||||| |||||||||||||| |||||||
Sbjct 599 GAAATCTAAGGTTGGT-GTCAAGCCTTTCGAGGCGTTAGTGTTTCTGCATTTGGTCGCAG 657
Query 625 CTTTTGAATTGGGATCAGAATTTAACTCAGAGGAGCTTTCTGATTACGTTTTCATGATCG 684
|||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 658 CTTTTGAATTAGGATCAGAATTTGACACAGAGGAGCTTTCTGATTACGTTTTCATGATCG 717
Query 685 CTAAGTACAAACAAGCAACTTCGGTGTGTAACAAGATTGGTTTAGATAGGGAAAGAGTCG 744
||||||| || |||||||||| ||| ||||||||||||||| |||||||| ||||||| |
Sbjct 718 CTAAGTATAAGCAAGCAACTTTGGTTTGTAACAAGATTGGTGTAGATAGGAAAAGAGTTG 777
Query 745 GGACACTCATCAAGAAACTCATGGATTCTGGCAAATCAATCTTGGCAGTCAAATTCATGT 804
||| ||||||||||| ||| |||||||||| ||| |||| || ||||||||||||||||
Sbjct 778 GGAAACTCATCAAGACTCTCTTGGATTCTGGTAAACCAATTTTAGCAGTCAAATTCATGT 837
Query 805 ATGAGTGTGGGATGACTGATGAATTCGAGCCAATCTCTGTTTTGAAATCTTACATTAAGG 864
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 838 ATGAGTGTGGGATGACTGATGAATTTGAGCCAATCCCTGTTTTGAAATCTTACATTAAGG 897
Query 865 ACTCTAGAGAAGCTGCTCTTAGAGTTTGCGTGGAGGATAACTACTCTAC-CAAGTCGCAG 923
||| |||||||||||||||||||||||||||||| |||||||||||| | ||||||||||
Sbjct 898 ACTGTAGAGAAGCTGCTCTTAGAGTTTGCGTGGAAGATAACTACTCT-CTCAAGTCGCAG 956
Query 924 AACGAAGCCAT-TGATAAAGAAGTCAGTGCAATGAAAGCAGCGATCAAAATCATCAAAGA 982
||||||||| | |||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 957 AACGAAGCC-TCTGATAAAGAAGTCAGTGCCTTGAAACCATTGATCAAAATCATCAAAGA 1015
Query 983 TCAGAACCTTGAATCCGAGTTTACTCAGGAGAAAGTTGAGGAGCGTGTAGAAGAGCTGGA 1042
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1016 TCAGAACCTTGAATCAGAGTTTACTCAGGAGAAAGTTGAGGAACGTGTAGAAGAGCTGGA 1075
Query 1043 GAAGTATAAGGCACTGAGGAAACGCAACACCACTAATCCTCCCAAGGAAGAGCCACAGCA 1102
||| |||||||| |||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1076 GAAAAATAAGGCATTGAGGAAACGCAACACGACTAATCCTCCCAAGCAAGAGCCACAGCA 1135
Query 1103 AAAGGGGAAAAAACGGACGCGTGACTGC---AATGGGACACAAGTTCCAGCTCCGAGTCA 1159
|||||||||||| ||||| | |||||| |||||| |||||||||||| |||||||||
Sbjct 1136 AAAGGGGAAAAAGCGGACTAGAGACTGCAAAAATGGGTCACAAGTTCCAGTTCCGAGTCA 1195
Query 1160 GCAGCTACTTTCTAGACCAGAAGCTCTGCTTATGCCTGAGCATAGTCATCATGGCTTACA 1219
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1196 GCAGCTACTTTCTAGACCAGAAGCTCTTCTTATGCCTGAGCATAGTCATCATGGCTTACA 1255
Query 1220 GTTGAACCCTTATGGTCTTATGACCTCAGCATTTTCTGGTGTTGTTGTGAACCCATTAGC 1279
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1256 GTTGAACCCTTATGGTCTTATGACCTCAGCATTTTCTGGTGTTGTTGTGAACCCATTAAC 1315
Query 1280 CGGGCTCTTTGGTTCCGCTGCAACTCCTCAACCTCTTTACTATGCTCAGCAAACTGGATT 1339
|||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1316 TGGGCTCTTTGGTTCAGGTGCAACTCCTCAATCTCTTTACTATGCTCAGCAAACTGGATA 1375
Query 1340 TGTATTGCCGCCTCAATACCACCCACCTTATTATTCTCAGTAGCTAGCAGCATCTCGAC 1398
||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1376 TGTGTTGCCGCCTCAATACCACCCGCCTTATTATTCTCAGTAGCTAGCTGCATCTCGAC 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70581966270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5