BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488488
Length=997
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16360.1 | Symbols: | NC domain-containing protein-related ... 1531 0.0
AT3G02700.1 | Symbols: | NC domain-containing protein-related ... 303 2e-81
> AT5G16360.1 | Symbols: | NC domain-containing protein-related
| chr5:5355082-5356300 REVERSE LENGTH=1111
Length=1111
Score = 1531 bits (829), Expect = 0.0
Identities = 947/1002 (95%), Gaps = 16/1002 (2%)
Strand=Plus/Plus
Query 1 AGAAAACCCAACTCATTAAGCAAACTCGGATCAACTtctcttctc-tctctctctcGCTA 59
||||||||||||||||||||||||||||||| | || |||||| |||||||||||||
Sbjct 38 AGAAAACCCAACTCATTAAGCAAACTCGGAT---C-TC-CTTCTCTTCTCTCTCTCGCT- 91
Query 60 AGAAAAGAAGTATAGAAGATGGGATTGTTCTCCCACAAGATCTCGAGAGATGATCTGAAA 119
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 92 ----AAGAACTATAGAAGATGGGATTGTTCTCCCACAAGATCTCCAGAGATGATCTGAAA 147
Query 120 CCAGGCGATCACATCTATTCATGGCGTAACGTTTATATCTACTCTCATCACGGAATCTAC 179
|||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||
Sbjct 148 CCAGGCGATCACATCTATTCTTGGCGTAACGCTTATATCTACTCTCATCACGGAGTCTAC 207
Query 180 GTAGGAGATGAGAAAGTCATTCATTTCACTCGTGGAGGTGGTCTAGAATTCGGAACAGGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 GTAGGAGATGAGAAAGTCATTCATTTCACTCGTGGAGGTGGTCTAGAATTCGGAACAGGA 267
Query 240 ACAGTTTTGGACAAGATCATCGATATTTCAATACCAAATCATGGAAGAAGAGATAATAAG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 268 ACAGTTTTGGACAAGATCATCGATATTTCAATACCAAATCATGGAAGAAGAGACAAAAAG 327
Query 300 TGTCTTGATTGTGGAGATCAATCCAATCTCGGTGGTGTAATCTCTTCTTGTCTTGATTGT 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 TGTATTGATTGTGGAGATCAATCCAATCTCGGTGGTGTAATCTCTTCTTGTCTTGATTGT 387
Query 360 TTTCTCGCCGGAGGAAATCTTTATCTCTTCGAATACAGTGCCTCTCCGTCAATCTTTCTA 419
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 388 TTTCTCGCCGGAGGAAATCTACATCTCTTCGAATACAGTGCCTCTCCGTCTATCTTTCTA 447
Query 420 GCTAAAAGAGGTGGTACATGCACGGTAGCATCTTCAGATCCTTGTGATGAAGTCATTTCT 479
|| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 448 GCCAAACGAGGTGGTACATGCACGATAGCATCTTCAGATCCTTGTGATGAAGTCATTTCT 507
Query 480 CGTGCTAAATTTCTTCTTTTGCAAAATGGGTTTGGTGAGTACGATCTTTTAGACAACAAT 539
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 508 CGTGCTAAATTTCTCCTTTTGCAAAATGGATTTGGTGAGTACGATCTTTTAGACAACAAT 567
Query 540 TGTGAAGATTTTGCCATCTACTGCAGTACTGGTTTGTTTGTGTTATCGGTTGCTACCAAG 599
|||||||||||||| || || |||| ||||||||||||||||| |||||||||||||||
Sbjct 568 TGTGAAGATTTTGCGATTTATTGCAAAACTGGTTTGTTTGTGTTGTCGGTTGCTACCAAG 627
Query 600 TTTGGATGTAGTGGTCAAGCCAATTCTCTGTCTGCAGCTGGTGGTGTTGTCGCTTTGACG 659
||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct 628 TTTGGATGTAGTGGTCAAGCCAATTCTGTATCTGCAGCTGGTGGTGTTGTTGCTTTGACG 687
Query 660 CTTAAGGTTTTAGGTGTGAAAAAGAAGAGTAGT-G-G-TCATGAGGATGATTCTGTGGTT 716
||||||||||||||||||||||||||||||||| | | |||||| ||||| |||||||||
Sbjct 688 CTTAAGGTTTTAGGTGTGAAAAAGAAGAGTAGTAGTGGTCATGAAGATGACTCTGTGGTT 747
Query 717 TCTGTTGTTAACCAGGTTATTTCTTCGGCGGTTAAATATGTAGTTCCTGGTATTGGTGGG 776
|||||||| |||||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 748 TCTGTTGTAAACCAGTTTATTTCTTCGACAGTTAAATATGTAGTTCCTGGTATTGGTGGT 807
Query 777 ATGGCTTTGGCTGAATATGGTAATTACTGTATTGGTCGTCTGTTTTACGACATTGGTGTT 836
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 TTGGCTTTGGCTGAATATGGTAATTACTGTATTGGTCGTCTGTTTTACGACATTGGTGTT 867
Query 837 AGAAAAGATGCGTGTAAGGTTTCTGTTGAAGAGCTTGTTGCATTTGTAGGAGCCAAGCAA 896
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 868 AGAAAAGATGCTTGTAAGGTTTCTGTTGAAGAGCTTGTAGCATTTGTAGGAGCCAAGCAA 927
Query 897 AGCATATTGGA-GAACAAGAAGTCTAGTTAGTTAGCACTTTGTTGTGCATTATGTATGTT 955
| ||| ||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 928 AACATCTTGGAAGG-CAAGAAGTCTAATTAGTTAGCACTTTGTTGTGCATTATGTATGTT 986
Query 956 TGATGACTAATTGTTGAGTATGGAGAGAGTGATTTTGCTTTT 997
||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 TGATGACTAATTGTTGAGTATGGAGAGAGTGATTTTGCTTTT 1028
> AT3G02700.1 | Symbols: | NC domain-containing protein-related
| chr3:581541-582949 REVERSE LENGTH=1081
Length=1081
Score = 303 bits (164), Expect = 2e-81
Identities = 404/516 (78%), Gaps = 32/516 (6%)
Strand=Plus/Plus
Query 73 AGAAGATGGGATT-GTTCTCCCACAAGATCTCGAGAGATGATCTGAAACCAGGCGATCAC 131
||||||||||||| || ||| | || ||||| ||||| ||| |||||||||||||||||
Sbjct 132 AGAAGATGGGATTCCTT-TCCAATAAAATCTCCAGAGACGATGTGAAACCAGGCGATCAC 190
Query 132 ATCTATTCATGGCGT-AACGTTTATATCTACTCTCATCACGGAATCTACGTAGG-AGATG 189
||||||||||||||| || | || || ||| |||||||||||||||| ||||| | |||
Sbjct 191 ATCTATTCATGGCGTCAA-GCCTACATTTACGCTCATCACGGAATCTATGTAGGTA-ATG 248
Query 190 AGA-AAGTCATTCATTTCACTCGTGGAGGTGGTCTAGA-ATTCGGAACAGGAACAGTT-T 246
|| |||||| ||||| |||||||| | ||||| ||| | | ||||| || || || |
Sbjct 249 -GACAAGTCAACCATTTTACTCGTGGTGATGGTCAAGAGACT-GGAACTGGGACT-TTCT 305
Query 247 TGGACAAGATCATCGATATTTCAATAC-CA-AATCATGGAAGAAGAGATAATAAGTGTCT 304
||||||| ||||| | || |||| | | || ||||||||| || | | | ||||
Sbjct 306 TGGACAACATCATTGTTAGTTCA-T-CTCATAATCATGGA-GAC-A-ACCC-A--TGTCC 357
Query 305 TGATTGTGGAGATCAATCCAATCTCGGTGGTGTAATCTCTTCTTGTCTTGATTGTTTTCT 364
|||||||||||||| ||||||||| || ||||| || ||||| || ||||| ||||| ||
Sbjct 358 TGATTGTGGAGATCGATCCAATCTTGGCGGTGTTATATCTTCCTGCCTTGAATGTTTCCT 417
Query 365 CGCCGGAGGAAATCTTTATCTCTTCGAATACAGTGCCTCTCC-GTCAATCTTTCTAGCTA 423
|||||||| |||| ||| |||| || ||||||| || || | | |||||||| || |
Sbjct 418 TGCCGGAGGTGATCTCTATGTCTTTGAGTACAGTGTTTCCCCTG-CTATCTTTCTTGCCA 476
Query 424 AAA---GAGGTGGTACATGCACGGTAGCATCTTCAGATCCTTGTGATGAAGTCATTTCTC 480
|| |||| || |||||| ||||||||||||||||| || |||||||| | ||
Sbjct 477 AACCTCGAGGCGGCGTATGCACTATAGCATCTTCAGATCCTCCAGAAGAAGTCATCTATC 536
Query 481 GTGCTAAATTTCTTCTTTTGCAAAATGGGTTTGGTGAGTACGATCTTTT-AGACAACAAT 539
| || |||||| | || ||||||||||| ||||||| |||| || | || | | |||||
Sbjct 537 GAGC-AAATTT-T-CTCTTGCAAAATGGTTTTGGTGTGTACAATGTCTTCA-AGAACAAC 592
Query 540 TGTGAAGATTTTGCCATCTACTGCAGTACTGGTTTG 575
|||||||||||||||||||| |||| || ||||||
Sbjct 593 TGTGAAGATTTTGCCATCTATTGCAAAACGGGTTTG 628
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48827590884
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5